Wall clock time and date at job start Sat Apr 11 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47364 * 2 1 4 4 C 1.38298 * 119.93612 * 265.00504 * 3 2 1 5 5 C 1.38090 * 120.07217 * 180.02562 * 4 3 2 6 6 C 1.38883 * 119.92826 * 359.97438 * 5 4 3 7 7 N 1.39946 * 120.06730 * 180.02562 * 6 5 4 8 8 C 1.34776 * 120.00202 * 144.93653 * 7 6 5 9 9 O 1.21593 * 119.99834 * 4.63544 * 8 7 6 10 10 N 1.34776 * 120.00449 * 184.63499 * 8 7 6 11 11 C 1.46490 * 120.00320 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47694 * 34.99937 * 11 10 8 13 13 C 1.53000 * 109.47190 * 274.99882 * 11 10 8 14 14 C 1.50703 * 109.47350 * 155.00217 * 11 10 8 15 15 H 1.08004 * 119.99760 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00237 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99689 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00104 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47304 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47013 * 119.99787 * 18 16 14 21 21 H 1.48491 * 109.47432 * 239.99604 * 18 16 14 22 22 C 1.38847 * 119.86501 * 0.27369 * 6 5 4 23 23 C 1.38142 * 119.92412 * 359.47641 * 22 6 5 24 24 S 1.76198 * 119.96401 * 180.25050 * 23 22 6 25 25 N 1.65599 * 107.21719 * 115.25073 * 24 23 22 26 26 O 1.42098 * 106.40200 * 228.79589 * 24 23 22 27 27 O 1.42104 * 106.40232 * 1.71260 * 24 23 22 28 28 H 1.09003 * 109.46417 * 299.99610 * 1 2 3 29 29 H 1.09004 * 109.47016 * 59.99089 * 1 2 3 30 30 H 1.09000 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46879 * 240.00186 * 2 1 3 32 32 H 1.08994 * 109.47489 * 120.00749 * 2 1 3 33 33 H 1.07999 * 119.96166 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.03496 * 179.97438 * 5 4 3 35 35 H 0.97005 * 119.99776 * 324.65731 * 7 6 5 36 36 H 0.97006 * 119.99668 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47240 * 60.00085 * 13 11 10 38 38 H 1.09006 * 109.47099 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47388 * 299.99806 * 13 11 10 40 40 H 0.97003 * 119.99351 * 180.02562 * 17 16 14 41 41 H 1.07992 * 120.03638 * 179.69806 * 22 6 5 42 42 H 0.96999 * 119.99748 * 150.00282 * 25 24 23 43 43 H 0.96993 * 120.00094 * 329.99775 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0367 -1.1939 5 6 2.8220 3.3383 -1.1971 6 6 2.9553 4.0292 0.0003 7 7 3.4218 5.3486 0.0004 8 6 2.9383 6.2343 0.8937 9 8 2.1601 5.8677 1.7531 10 7 3.3172 7.5263 0.8346 11 6 2.7912 8.4891 1.8053 12 1 2.6648 7.9995 2.7710 13 6 1.4393 9.0159 1.3199 14 6 3.7563 9.6379 1.9471 15 1 4.6704 9.6493 1.3719 16 6 3.4729 10.6737 2.8118 17 7 2.3601 10.6595 3.5126 18 14 4.6696 12.0972 2.9880 19 1 5.8371 11.8756 2.0975 20 1 3.9916 13.3634 2.6104 21 1 5.1315 12.1842 4.3966 22 6 2.6296 3.4064 1.1978 23 6 2.1640 2.1058 1.1938 24 16 1.7441 1.3168 2.7122 25 7 0.1155 1.0190 2.6760 26 8 2.3845 0.0484 2.6958 27 8 1.9533 2.2797 3.7361 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 2.2574 1.4987 -2.1247 34 1 3.0787 3.8185 -2.1298 35 1 4.0962 5.6246 -0.6400 36 1 3.9378 7.8188 0.1488 37 1 0.7412 8.1851 1.2173 38 1 1.0477 9.7320 2.0424 39 1 1.5656 9.5057 0.3543 40 1 2.1606 11.3885 4.1207 41 1 2.7368 3.9394 2.1309 42 1 -0.2488 0.2563 3.1519 43 1 -0.4741 1.6073 2.1790 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160240304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:50 Heat of formation + Delta-G solvation = -100.766133 kcal Electronic energy + Delta-G solvation = -27867.219065 eV Core-core repulsion = 23845.548030 eV Total energy + Delta-G solvation = -4021.671035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72936 -40.13631 -38.43743 -37.15088 -37.00420 -36.20663 -34.83144 -34.33178 -33.43464 -32.34382 -30.96450 -29.15536 -27.34839 -25.06749 -24.72114 -23.26913 -22.17312 -21.62085 -20.66347 -19.92602 -19.58602 -18.47125 -18.17185 -17.69737 -17.36618 -16.95085 -16.80833 -16.36792 -16.18379 -15.92868 -15.57285 -15.11851 -14.88993 -14.66764 -14.44917 -14.38849 -13.82899 -13.69546 -13.36087 -13.29349 -13.26421 -13.23564 -13.00323 -12.96613 -12.80226 -12.72373 -12.36596 -12.28722 -12.19673 -12.11172 -11.50715 -11.35993 -11.10828 -11.07029 -10.93532 -10.62831 -10.35226 -9.88271 -9.08619 -8.18651 -6.36121 -0.66040 -0.25334 0.22537 1.44162 1.45039 1.56761 1.69492 2.00973 2.14243 2.40219 2.45157 2.70246 3.12203 3.34574 3.54395 3.69208 3.84689 4.02718 4.26876 4.35959 4.49413 4.53839 4.66250 4.74921 4.77790 4.91715 4.97837 5.06765 5.09024 5.15704 5.17453 5.20991 5.38273 5.39225 5.42442 5.51856 5.57740 5.63413 5.82505 5.90190 6.08054 6.21009 6.28976 6.71812 7.18667 7.32587 7.62902 8.88213 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019648 B = 0.002719 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.717683 B =10294.645744 C =11008.049757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.137 4.137 3 C 0.003 3.997 4 C -0.113 4.113 5 C -0.074 4.074 6 C 0.127 3.873 7 N -0.675 5.675 8 C 0.688 3.312 9 O -0.624 6.624 10 N -0.711 5.711 11 C 0.287 3.713 12 H -0.002 1.002 13 C -0.133 4.133 14 C -0.546 4.546 15 H 0.075 0.925 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.975 3.025 19 H -0.259 1.259 20 H -0.277 1.277 21 H -0.286 1.286 22 C -0.054 4.054 23 C -0.665 4.665 24 S 2.717 3.283 25 N -1.224 6.224 26 O -0.977 6.977 27 O -1.010 7.010 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.177 0.823 34 H 0.171 0.829 35 H 0.425 0.575 36 H 0.405 0.595 37 H 0.011 0.989 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.266 0.734 41 H 0.120 0.880 42 H 0.435 0.565 43 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 -21.805 -14.508 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.174 4.174 3 C 0.000 4.000 4 C -0.132 4.132 5 C -0.095 4.095 6 C 0.031 3.969 7 N -0.325 5.325 8 C 0.388 3.612 9 O -0.504 6.504 10 N -0.364 5.364 11 C 0.183 3.817 12 H 0.015 0.985 13 C -0.192 4.192 14 C -0.584 4.584 15 H 0.094 0.906 16 C -0.187 4.187 17 N -0.556 5.556 18 Si 0.799 3.201 19 H -0.183 1.183 20 H -0.203 1.203 21 H -0.212 1.212 22 C -0.076 4.076 23 C -0.755 4.755 24 S 2.807 3.193 25 N -0.906 5.906 26 O -0.966 6.966 27 O -0.999 6.999 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.194 0.806 34 H 0.188 0.812 35 H 0.264 0.736 36 H 0.241 0.759 37 H 0.030 0.970 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.138 0.862 42 H 0.269 0.731 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.778 -22.071 -12.865 25.698 hybrid contribution 0.532 1.720 -0.417 1.848 sum -2.246 -20.351 -13.282 24.406 Atomic orbital electron populations 1.22315 0.92634 1.04174 1.04200 1.21381 0.98336 0.90599 1.07125 1.19908 0.92682 0.96111 0.91256 1.21421 0.98830 0.94126 0.98802 1.21599 0.96280 0.95313 0.96298 1.17803 1.00980 0.83875 0.94278 1.42417 1.44833 1.07588 1.37707 1.16344 0.81053 0.81903 0.81889 1.90890 1.41134 1.79061 1.39325 1.45422 1.49359 1.05869 1.35717 1.18285 0.91956 0.85529 0.85934 0.98456 1.21908 0.97610 0.99133 1.00527 1.21557 1.06043 1.05066 1.25740 0.90650 1.25818 0.97170 1.01010 0.94679 1.70070 1.25446 1.33505 1.26546 0.85255 0.78764 0.78226 0.77808 1.18261 1.20284 1.21189 1.21009 0.95192 0.92220 0.99200 1.30136 1.19934 1.05562 1.19833 1.00760 0.73339 0.72470 0.72772 1.52931 1.26286 1.42973 1.68446 1.93509 1.74784 1.41495 1.86813 1.93598 1.85422 1.64253 1.56656 0.90542 0.91567 0.90115 0.87225 0.88476 0.80573 0.81174 0.73596 0.75948 0.97024 0.91429 0.93852 0.92511 0.86198 0.73125 0.73790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.77 71.98 0.70 -1.07 16 2 C -0.14 -1.92 5.49 29.85 0.16 -1.75 16 3 C 0.00 0.05 5.13 -19.84 -0.10 -0.05 16 4 C -0.11 -1.72 9.67 22.25 0.22 -1.51 16 5 C -0.07 -1.35 9.97 22.39 0.22 -1.12 16 6 C 0.13 3.58 6.30 38.15 0.24 3.82 16 7 N -0.68 -19.69 5.34 -317.17 -1.69 -21.38 16 8 C 0.69 28.37 8.37 179.05 1.50 29.87 16 9 O -0.62 -31.95 13.45 -4.01 -0.05 -32.00 16 10 N -0.71 -29.48 5.07 -461.42 -2.34 -31.82 16 11 C 0.29 15.03 2.56 44.25 0.11 15.15 16 12 H 0.00 -0.16 7.58 -2.39 -0.02 -0.17 16 13 C -0.13 -6.77 9.26 71.98 0.67 -6.11 16 14 C -0.55 -28.88 8.73 25.60 0.22 -28.66 16 15 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 16 C 0.01 0.72 5.30 84.65 0.45 1.17 16 17 N -0.92 -53.08 11.32 21.45 0.24 -52.84 16 18 Si 0.97 42.10 29.54 68.60 2.03 44.13 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 22 C -0.05 -1.83 8.19 22.39 0.18 -1.65 16 23 C -0.67 -17.79 5.90 22.25 0.13 -17.66 16 24 S 2.72 71.23 5.61 -56.49 -0.32 70.91 16 25 N -1.22 -18.61 7.02 37.02 0.26 -18.35 16 26 O -0.98 -26.84 15.37 -128.00 -1.97 -28.81 16 27 O -1.01 -38.31 16.97 -128.00 -2.17 -40.48 16 28 H 0.08 0.74 3.87 -2.39 -0.01 0.74 16 29 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.11 1.00 8.05 -2.38 -0.02 0.98 16 32 H 0.10 1.69 5.04 -2.39 -0.01 1.67 16 33 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.43 8.50 8.84 -92.70 -0.82 7.68 16 36 H 0.41 13.55 8.56 -92.70 -0.79 12.76 16 37 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.07 3.78 6.07 -2.38 -0.01 3.76 16 39 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.12 5.20 5.51 -2.91 -0.02 5.19 16 42 H 0.43 4.04 8.96 -96.75 -0.87 3.17 16 43 H 0.43 5.14 7.74 -96.75 -0.75 4.40 16 Total: -1.00 -85.10 360.61 -3.42 -88.52 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -2.11 Total: 31.69 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 4.71 Total: -9.57 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -3.53 Total: -124.39 kcal Atomic # 8 Polarization: -97.09 SS G_CDS: -4.19 Total: -101.29 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 71.23 SS G_CDS: -0.32 Total: 70.91 kcal Total: -85.10 -3.42 -88.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160240304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.246 kcal (2) G-P(sol) polarization free energy of solvation -85.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds