Wall clock time and date at job start Sat Apr 11 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 H 1.08997 * 109.47216 * 305.69704 * 3 2 1 5 5 C 1.50697 * 109.47045 * 185.68998 * 3 2 1 6 6 H 1.08000 * 120.00453 * 275.00674 * 5 3 2 7 7 C 1.37877 * 119.99769 * 95.00895 * 5 3 2 8 8 N 1.31517 * 120.00023 * 184.83112 * 7 5 3 9 9 Si 1.86800 * 120.00197 * 4.82715 * 7 5 3 10 10 H 1.48500 * 109.46953 * 84.86309 * 9 7 5 11 11 H 1.48502 * 109.47349 * 204.86238 * 9 7 5 12 12 H 1.48505 * 109.46989 * 324.86682 * 9 7 5 13 13 N 1.46503 * 109.46959 * 65.69606 * 3 2 1 14 14 C 1.34778 * 119.99997 * 274.99842 * 13 3 2 15 15 O 1.21557 * 119.99681 * 359.97438 * 14 13 3 16 16 C 1.47836 * 120.00219 * 180.02562 * 14 13 3 17 17 C 1.40031 * 120.55926 * 179.97438 * 16 14 13 18 18 C 1.38359 * 118.28477 * 179.77354 * 17 16 14 19 19 C 1.38344 * 119.30703 * 0.46891 * 18 17 16 20 20 S 1.76194 * 119.46202 * 179.79366 * 19 18 17 21 21 O 1.42102 * 106.40143 * 23.26886 * 20 19 18 22 22 O 1.42103 * 106.40442 * 156.18800 * 20 19 18 23 23 N 1.65602 * 107.21981 * 269.72925 * 20 19 18 24 24 C 1.46495 * 119.99959 * 89.99803 * 23 20 19 25 25 C 1.46501 * 119.99859 * 270.00215 * 23 20 19 26 26 N 1.31933 * 121.07724 * 359.52161 * 19 18 17 27 27 C 1.31695 * 121.88046 * 0.24684 * 26 19 18 28 28 H 1.08998 * 109.47283 * 59.99817 * 1 2 3 29 29 H 1.08998 * 109.46840 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46828 * 299.99278 * 1 2 3 31 31 H 1.08995 * 109.47113 * 239.99984 * 2 1 3 32 32 H 1.08998 * 109.47283 * 120.00183 * 2 1 3 33 33 H 0.96996 * 120.00220 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00309 * 95.00109 * 13 3 2 35 35 H 1.08003 * 120.85398 * 0.02562 * 17 16 14 36 36 H 1.07996 * 120.34224 * 180.24148 * 18 17 16 37 37 H 1.09001 * 109.47427 * 60.00485 * 24 23 20 38 38 H 1.09005 * 109.47037 * 180.02562 * 24 23 20 39 39 H 1.08994 * 109.47197 * 300.00126 * 24 23 20 40 40 H 1.08995 * 109.47499 * 90.00253 * 25 23 20 41 41 H 1.09010 * 109.46903 * 209.99920 * 25 23 20 42 42 H 1.09002 * 109.47122 * 329.99703 * 25 23 20 43 43 H 1.07993 * 119.71410 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5957 1.9849 -0.8345 5 6 3.5403 1.4448 -0.1409 6 1 4.1650 1.3333 0.7331 7 6 4.1156 1.5894 -1.3855 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9172 -2.8785 10 1 2.7754 3.3741 -2.9863 11 1 3.7402 1.4498 -4.1028 12 1 1.7561 1.1883 -2.7331 13 7 1.6667 2.0924 1.2588 14 6 0.4508 2.6588 1.3902 15 8 -0.3359 2.6308 0.4640 16 6 0.0744 3.3150 2.6603 17 6 -1.1856 3.9076 2.8093 18 6 -1.4903 4.5046 4.0198 19 6 -0.5462 4.5057 5.0309 20 16 -0.9279 5.2696 6.5721 21 8 -2.3452 5.2819 6.6737 22 8 -0.0845 4.6618 7.5410 23 7 -0.4529 6.8524 6.4657 24 6 -1.3903 7.8673 5.9784 25 6 0.9047 7.2378 6.8588 26 7 0.6334 3.9395 4.8619 27 6 0.9686 3.3548 3.7305 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 5.8251 1.5978 -2.3973 34 1 2.2947 2.1151 1.9978 35 1 -1.9025 3.8953 2.0017 36 1 -2.4538 4.9681 4.1722 37 1 -2.2638 7.8978 6.6298 38 1 -0.9026 8.8421 5.9783 39 1 -1.7018 7.6171 4.9644 40 1 1.5659 7.1714 5.9948 41 1 0.8978 8.2615 7.2332 42 1 1.2606 6.5673 7.6411 43 1 1.9438 2.9017 3.6304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186375021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:41 Heat of formation + Delta-G solvation = -66.564390 kcal Electronic energy + Delta-G solvation = -27643.585098 eV Core-core repulsion = 23623.397162 eV Total energy + Delta-G solvation = -4020.187936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.73068 -38.95628 -37.60375 -36.56104 -36.14863 -35.45443 -32.91590 -32.80057 -32.19651 -31.00574 -28.48799 -27.74599 -25.31653 -24.94670 -24.01839 -22.87612 -21.07015 -19.89219 -19.59368 -18.60826 -18.09796 -17.65714 -17.12324 -16.53898 -16.21651 -15.53514 -15.35487 -15.07344 -14.93057 -14.69732 -14.48757 -14.17590 -13.90210 -13.48688 -13.36924 -13.25576 -13.06339 -12.86648 -12.63342 -12.52815 -12.37212 -12.05086 -12.00624 -11.96535 -11.92993 -11.67210 -11.06543 -10.85110 -10.80710 -10.30146 -10.23433 -10.08351 -9.94931 -9.77978 -9.57896 -9.40967 -9.32588 -8.82146 -8.26032 -6.34297 -4.39431 -0.18000 0.12189 0.85925 2.40751 2.83530 3.16909 3.26133 3.31440 3.32076 3.54758 3.66643 3.69160 4.22104 4.29723 4.36058 4.51966 4.58303 4.74779 4.87170 4.95860 5.01679 5.08891 5.14552 5.22064 5.33465 5.45962 5.50291 5.52397 5.76662 5.92735 5.97117 6.05203 6.09337 6.11851 6.50340 6.66287 6.78597 6.85843 7.11915 7.18154 7.24108 7.37034 7.92149 8.34355 8.58379 8.68735 9.26284 10.77021 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002708 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.809182 B =10336.253032 C =10764.438985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.236 3.764 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.081 0.919 7 C 0.084 3.916 8 N -0.884 5.884 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.688 5.688 14 C 0.539 3.461 15 O -0.537 6.537 16 C -0.117 4.117 17 C -0.039 4.039 18 C -0.093 4.093 19 C -0.442 4.442 20 S 2.705 3.295 21 O -0.946 6.946 22 O -0.931 6.931 23 N -1.002 6.002 24 C 0.087 3.913 25 C 0.083 3.917 26 N -0.392 5.392 27 C 0.112 3.888 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.269 0.731 34 H 0.394 0.606 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.290 11.798 14.374 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.134 3.866 4 H 0.072 0.928 5 C -0.573 4.573 6 H 0.099 0.901 7 C -0.122 4.122 8 N -0.520 5.520 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.183 1.183 13 N -0.336 5.336 14 C 0.323 3.677 15 O -0.417 6.417 16 C -0.122 4.122 17 C -0.066 4.066 18 C -0.114 4.114 19 C -0.660 4.660 20 S 2.790 3.210 21 O -0.936 6.936 22 O -0.921 6.921 23 N -0.842 5.842 24 C -0.058 4.058 25 C -0.062 4.062 26 N -0.101 5.101 27 C -0.051 4.051 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.229 0.771 35 H 0.176 0.824 36 H 0.175 0.825 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.418 11.398 14.935 22.521 hybrid contribution -0.355 0.105 -2.122 2.154 sum -12.772 11.503 12.813 21.439 Atomic orbital electron populations 1.21919 0.97424 0.99117 1.01895 1.22086 0.93648 0.99157 1.01591 1.19289 0.95855 0.89255 0.82167 0.92796 1.20973 0.88395 1.52273 0.95652 0.90145 1.24933 0.94891 0.93529 0.98807 1.69871 1.09757 1.47667 1.24661 0.86918 0.81289 0.79641 0.82283 1.19838 1.21043 1.18291 1.46709 1.13653 1.54597 1.18659 1.18027 0.83530 0.79854 0.86319 1.90767 1.50769 1.59891 1.40229 1.21756 0.95775 0.98080 0.96609 1.21890 0.95563 0.91849 0.97319 1.21959 0.99804 0.97035 0.92623 1.33811 0.97696 1.12189 1.22324 1.02101 0.73406 0.72165 0.73300 1.93612 1.28317 1.86213 1.85451 1.93593 1.68224 1.74506 1.55747 1.57289 1.22032 1.24435 1.80458 1.21628 0.92686 0.92206 0.99323 1.21712 0.80782 1.02563 1.01150 1.67783 1.15099 1.04267 1.22982 1.23399 0.99595 0.94548 0.87514 0.92999 0.94836 0.93396 0.91740 0.92783 0.92068 0.77121 0.82365 0.82495 0.91060 0.89748 0.92138 0.92307 0.90311 0.89414 0.80791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.53 37.16 0.32 -2.45 16 2 C -0.13 -2.58 5.59 -26.73 -0.15 -2.73 16 3 C 0.24 5.23 1.89 -69.08 -0.13 5.10 16 4 H 0.05 1.31 4.73 -51.93 -0.25 1.06 16 5 C -0.54 -13.61 9.05 -34.44 -0.31 -13.92 16 6 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 7 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 8 N -0.88 -25.11 13.96 55.43 0.77 -24.33 16 9 Si 0.87 20.63 26.99 -169.99 -4.59 16.04 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.99 6.82 56.52 0.39 -5.60 16 13 N -0.69 -12.77 4.98 -55.88 -0.28 -13.05 16 14 C 0.54 9.58 6.38 -12.33 -0.08 9.50 16 15 O -0.54 -10.94 13.56 5.32 0.07 -10.87 16 16 C -0.12 -1.69 5.89 -104.82 -0.62 -2.31 16 17 C -0.04 -0.49 9.72 -38.87 -0.38 -0.87 16 18 C -0.09 -1.02 9.54 -39.50 -0.38 -1.40 16 19 C -0.44 -5.41 6.86 -17.47 -0.12 -5.53 16 20 S 2.71 30.03 5.76 -107.50 -0.62 29.41 16 21 O -0.95 -11.49 16.40 -57.17 -0.94 -12.43 16 22 O -0.93 -12.95 16.45 -57.17 -0.94 -13.89 16 23 N -1.00 -8.08 3.58 -129.20 -0.46 -8.55 16 24 C 0.09 0.48 10.30 59.84 0.62 1.10 16 25 C 0.08 0.56 10.63 59.85 0.64 1.20 16 26 N -0.39 -5.37 10.09 -12.12 -0.12 -5.50 16 27 C 0.11 1.50 10.71 -17.13 -0.18 1.32 16 28 H 0.05 1.04 7.88 -51.93 -0.41 0.63 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.90 5.63 -51.93 -0.29 0.60 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.39 6.35 6.66 -40.82 -0.27 6.08 16 35 H 0.16 1.81 7.74 -52.48 -0.41 1.40 16 36 H 0.16 1.26 7.59 -52.49 -0.40 0.87 16 37 H 0.07 0.37 8.01 -51.93 -0.42 -0.04 16 38 H 0.08 0.30 7.79 -51.93 -0.40 -0.11 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.34 7.92 -51.92 -0.41 -0.08 16 42 H 0.09 0.66 7.02 -51.93 -0.36 0.29 16 43 H 0.18 2.00 6.42 -52.49 -0.34 1.66 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -33.81 367.83 -8.08 -41.89 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.64 Total: 4.57 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -0.87 Total: -8.84 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.09 Total: -51.42 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.81 Total: -37.20 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.59 Total: 16.04 kcal Atomic # 16 Polarization: 30.03 SS G_CDS: -0.62 Total: 29.41 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.81 -8.08 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186375021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.676 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds