Wall clock time and date at job start Sat Apr 11 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 H 1.08997 * 109.47216 * 305.69704 * 3 2 1 5 5 C 1.50697 * 109.47045 * 185.68998 * 3 2 1 6 6 H 1.08000 * 120.00453 * 275.00674 * 5 3 2 7 7 C 1.37877 * 119.99769 * 95.00895 * 5 3 2 8 8 N 1.31517 * 120.00023 * 184.83112 * 7 5 3 9 9 Si 1.86800 * 120.00197 * 4.82715 * 7 5 3 10 10 H 1.48500 * 109.46953 * 84.86309 * 9 7 5 11 11 H 1.48502 * 109.47349 * 204.86238 * 9 7 5 12 12 H 1.48505 * 109.46989 * 324.86682 * 9 7 5 13 13 N 1.46503 * 109.46959 * 65.69606 * 3 2 1 14 14 C 1.34778 * 119.99997 * 274.99842 * 13 3 2 15 15 O 1.21557 * 119.99681 * 359.97438 * 14 13 3 16 16 C 1.47836 * 120.00219 * 180.02562 * 14 13 3 17 17 C 1.40031 * 120.55926 * 179.97438 * 16 14 13 18 18 C 1.38359 * 118.28477 * 179.77354 * 17 16 14 19 19 C 1.38344 * 119.30703 * 0.46891 * 18 17 16 20 20 S 1.76194 * 119.46202 * 179.79366 * 19 18 17 21 21 O 1.42102 * 106.40143 * 23.26886 * 20 19 18 22 22 O 1.42103 * 106.40442 * 156.18800 * 20 19 18 23 23 N 1.65602 * 107.21981 * 269.72925 * 20 19 18 24 24 C 1.46495 * 119.99959 * 89.99803 * 23 20 19 25 25 C 1.46501 * 119.99859 * 270.00215 * 23 20 19 26 26 N 1.31933 * 121.07724 * 359.52161 * 19 18 17 27 27 C 1.31695 * 121.88046 * 0.24684 * 26 19 18 28 28 H 1.08998 * 109.47283 * 59.99817 * 1 2 3 29 29 H 1.08998 * 109.46840 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46828 * 299.99278 * 1 2 3 31 31 H 1.08995 * 109.47113 * 239.99984 * 2 1 3 32 32 H 1.08998 * 109.47283 * 120.00183 * 2 1 3 33 33 H 0.96996 * 120.00220 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00309 * 95.00109 * 13 3 2 35 35 H 1.08003 * 120.85398 * 0.02562 * 17 16 14 36 36 H 1.07996 * 120.34224 * 180.24148 * 18 17 16 37 37 H 1.09001 * 109.47427 * 60.00485 * 24 23 20 38 38 H 1.09005 * 109.47037 * 180.02562 * 24 23 20 39 39 H 1.08994 * 109.47197 * 300.00126 * 24 23 20 40 40 H 1.08995 * 109.47499 * 90.00253 * 25 23 20 41 41 H 1.09010 * 109.46903 * 209.99920 * 25 23 20 42 42 H 1.09002 * 109.47122 * 329.99703 * 25 23 20 43 43 H 1.07993 * 119.71410 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5957 1.9849 -0.8345 5 6 3.5403 1.4448 -0.1409 6 1 4.1650 1.3333 0.7331 7 6 4.1156 1.5894 -1.3855 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9172 -2.8785 10 1 2.7754 3.3741 -2.9863 11 1 3.7402 1.4498 -4.1028 12 1 1.7561 1.1883 -2.7331 13 7 1.6667 2.0924 1.2588 14 6 0.4508 2.6588 1.3902 15 8 -0.3359 2.6308 0.4640 16 6 0.0744 3.3150 2.6603 17 6 -1.1856 3.9076 2.8093 18 6 -1.4903 4.5046 4.0198 19 6 -0.5462 4.5057 5.0309 20 16 -0.9279 5.2696 6.5721 21 8 -2.3452 5.2819 6.6737 22 8 -0.0845 4.6618 7.5410 23 7 -0.4529 6.8524 6.4657 24 6 -1.3903 7.8673 5.9784 25 6 0.9047 7.2378 6.8588 26 7 0.6334 3.9395 4.8619 27 6 0.9686 3.3548 3.7305 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 5.8251 1.5978 -2.3973 34 1 2.2947 2.1151 1.9978 35 1 -1.9025 3.8953 2.0017 36 1 -2.4538 4.9681 4.1722 37 1 -2.2638 7.8978 6.6298 38 1 -0.9026 8.8421 5.9783 39 1 -1.7018 7.6171 4.9644 40 1 1.5659 7.1714 5.9948 41 1 0.8978 8.2615 7.2332 42 1 1.2606 6.5673 7.6411 43 1 1.9438 2.9017 3.6304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186375021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:40 Heat of formation + Delta-G solvation = -92.898272 kcal Electronic energy + Delta-G solvation = -27644.727021 eV Core-core repulsion = 23623.397162 eV Total energy + Delta-G solvation = -4021.329859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87131 -40.32106 -38.53471 -37.20318 -37.11117 -37.03153 -34.55125 -33.99688 -33.67692 -32.30844 -29.52097 -28.95966 -26.42869 -25.61410 -25.05583 -24.58577 -22.48069 -21.48163 -20.50135 -19.81004 -19.27630 -18.55175 -18.23002 -18.18409 -17.22542 -16.91457 -16.44863 -16.33190 -16.13059 -15.61413 -15.44410 -15.37954 -15.10711 -14.79663 -14.55588 -14.29758 -14.17004 -14.00594 -13.80421 -13.71194 -13.64504 -13.32583 -13.27233 -12.95329 -12.70957 -12.61769 -12.60961 -12.51891 -12.41870 -11.90380 -11.76315 -11.35104 -11.27836 -11.25042 -10.86381 -10.82934 -10.74049 -10.11014 -9.85864 -8.40709 -6.47696 -1.13349 -0.81490 -0.11609 1.28257 1.33677 1.43150 1.44634 1.83616 2.14619 2.25397 2.36688 2.57467 2.76433 2.98883 3.40686 3.48647 3.61416 3.76305 3.80130 3.83809 4.24131 4.28301 4.38213 4.45155 4.53018 4.55239 4.56168 4.75520 4.76654 4.80741 4.97953 4.99070 5.03303 5.08424 5.11171 5.17750 5.22387 5.35737 5.49782 5.51665 5.64637 6.06651 6.24374 6.57219 6.70768 7.12817 7.25268 8.74003 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002708 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.809182 B =10336.253032 C =10764.438985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.242 3.758 4 H 0.037 0.963 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.035 3.965 8 N -0.928 5.928 9 Si 0.924 3.076 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.252 1.252 13 N -0.691 5.691 14 C 0.545 3.455 15 O -0.564 6.564 16 C -0.133 4.133 17 C -0.034 4.034 18 C -0.084 4.084 19 C -0.445 4.445 20 S 2.719 3.281 21 O -0.957 6.957 22 O -0.963 6.963 23 N -0.995 5.995 24 C 0.073 3.927 25 C 0.075 3.925 26 N -0.410 5.410 27 C 0.111 3.889 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.271 0.729 34 H 0.405 0.595 35 H 0.171 0.829 36 H 0.191 0.809 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.076 0.924 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 13.132 15.035 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.139 3.861 4 H 0.055 0.945 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.166 4.166 8 N -0.566 5.566 9 Si 0.748 3.252 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.176 1.176 13 N -0.340 5.340 14 C 0.331 3.669 15 O -0.445 6.445 16 C -0.139 4.139 17 C -0.061 4.061 18 C -0.105 4.105 19 C -0.662 4.662 20 S 2.803 3.197 21 O -0.946 6.946 22 O -0.953 6.953 23 N -0.837 5.837 24 C -0.071 4.071 25 C -0.070 4.070 26 N -0.119 5.119 27 C -0.051 4.051 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.242 0.758 35 H 0.188 0.812 36 H 0.208 0.792 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.095 0.905 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.480 12.730 15.617 24.811 hybrid contribution 0.243 -0.209 -2.179 2.202 sum -14.237 12.521 13.438 23.239 Atomic orbital electron populations 1.21794 0.95798 1.00503 1.01200 1.22008 0.95022 0.97777 1.01571 1.19010 0.93517 0.90408 0.83197 0.94526 1.21182 0.90106 1.50750 0.94720 0.92375 1.25593 0.95728 0.93833 1.01401 1.69974 1.11300 1.49965 1.25350 0.86096 0.80095 0.79353 0.79629 1.19914 1.20512 1.17553 1.46393 1.14673 1.55018 1.17890 1.18319 0.82541 0.78964 0.87102 1.90748 1.51378 1.60813 1.41533 1.21443 0.97225 0.99916 0.95281 1.22106 0.94854 0.90972 0.98208 1.22295 1.00741 0.96096 0.91388 1.34183 0.97441 1.11476 1.23105 1.01626 0.72759 0.72700 0.72655 1.93591 1.28854 1.86687 1.85482 1.93553 1.68936 1.75900 1.56900 1.57135 1.22983 1.23357 1.80267 1.21958 0.92648 0.92574 0.99910 1.21901 0.80028 1.03991 1.01033 1.67819 1.16097 1.05019 1.22994 1.23555 0.99947 0.94324 0.87229 0.94342 0.92381 0.93387 0.92718 0.91894 0.91982 0.75844 0.81201 0.79208 0.90646 0.87245 0.91135 0.92181 0.87300 0.90533 0.79731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 8.53 71.98 0.61 -4.29 16 2 C -0.12 -5.01 5.59 30.59 0.17 -4.84 16 3 C 0.24 10.67 1.89 44.24 0.08 10.76 16 4 H 0.04 1.76 4.73 -2.39 -0.01 1.75 16 5 C -0.53 -27.30 9.05 25.60 0.23 -27.07 16 6 H 0.06 3.20 8.06 -2.91 -0.02 3.17 16 7 C 0.04 1.92 5.47 84.65 0.46 2.38 16 8 N -0.93 -53.79 13.96 21.45 0.30 -53.49 16 9 Si 0.92 42.76 26.99 68.60 1.85 44.61 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.25 -11.25 6.82 99.48 0.68 -10.58 16 13 N -0.69 -25.35 4.98 -448.99 -2.24 -27.59 16 14 C 0.55 18.89 6.38 86.78 0.55 19.44 16 15 O -0.56 -22.43 13.56 -3.89 -0.05 -22.48 16 16 C -0.13 -3.69 5.89 -19.99 -0.12 -3.81 16 17 C -0.03 -0.78 9.72 22.73 0.22 -0.56 16 18 C -0.08 -1.64 9.54 22.32 0.21 -1.42 16 19 C -0.44 -10.09 6.86 84.70 0.58 -9.51 16 20 S 2.72 56.04 5.76 -56.49 -0.33 55.71 16 21 O -0.96 -21.27 16.40 -128.00 -2.10 -23.37 16 22 O -0.96 -26.22 16.45 -128.00 -2.11 -28.33 16 23 N -1.00 -13.78 3.58 -562.69 -2.02 -15.79 16 24 C 0.07 0.59 10.30 127.77 1.32 1.90 16 25 C 0.07 0.86 10.63 127.77 1.36 2.22 16 26 N -0.41 -10.77 10.09 -192.24 -1.94 -12.71 16 27 C 0.11 2.89 10.71 85.02 0.91 3.80 16 28 H 0.04 1.48 7.88 -2.39 -0.02 1.46 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.05 1.72 5.63 -2.38 -0.01 1.71 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.40 12.98 6.66 -92.71 -0.62 12.37 16 35 H 0.17 3.47 7.74 -2.91 -0.02 3.45 16 36 H 0.19 2.35 7.59 -2.91 -0.02 2.33 16 37 H 0.07 0.57 8.01 -2.39 -0.02 0.55 16 38 H 0.11 0.35 7.79 -2.38 -0.02 0.34 16 39 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 0.60 7.92 -2.38 -0.02 0.58 16 42 H 0.08 1.07 7.02 -2.39 -0.02 1.05 16 43 H 0.19 4.14 6.42 -2.91 -0.02 4.13 16 Total: -1.00 -72.78 367.83 -1.62 -74.40 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.40 Total: 20.03 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 6.60 Total: -11.00 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -5.89 Total: -109.58 kcal Atomic # 8 Polarization: -69.91 SS G_CDS: -4.26 Total: -74.17 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.85 Total: 44.61 kcal Atomic # 16 Polarization: 56.04 SS G_CDS: -0.33 Total: 55.71 kcal Total: -72.78 -1.62 -74.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186375021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.498 kcal (2) G-P(sol) polarization free energy of solvation -72.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds