Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36949 * 120.00106 * 2 1 4 4 H 1.07995 * 120.00166 * 155.43578 * 3 2 1 5 5 C 1.38977 * 119.99953 * 335.71724 * 3 2 1 6 6 N 1.31413 * 120.00053 * 356.26122 * 5 3 2 7 7 Si 1.86804 * 120.00267 * 176.26595 * 5 3 2 8 8 H 1.48501 * 109.47043 * 89.99393 * 7 5 3 9 9 H 1.48499 * 109.47401 * 210.00086 * 7 5 3 10 10 H 1.48507 * 109.46960 * 329.99912 * 7 5 3 11 11 C 1.34775 * 119.99853 * 179.97438 * 2 1 3 12 12 O 1.21670 * 119.99804 * 175.53827 * 11 2 1 13 13 C 1.47169 * 120.00112 * 355.54015 * 11 2 1 14 14 C 1.35306 * 123.15248 * 188.68027 * 13 11 2 15 15 S 1.70941 * 108.82159 * 179.97438 * 14 13 11 16 16 C 1.70774 * 91.13545 * 0.28375 * 15 14 13 17 17 C 1.50702 * 124.71202 * 179.85219 * 16 15 14 18 18 N 1.46496 * 109.47092 * 269.97782 * 17 16 15 19 19 C 1.34785 * 119.99742 * 179.97438 * 18 17 16 20 20 O 1.21506 * 119.99853 * 0.02562 * 19 18 17 21 21 O 1.34635 * 119.99558 * 179.97438 * 19 18 17 22 22 C 1.45203 * 116.99369 * 180.02562 * 21 19 18 23 23 C 1.53004 * 109.46984 * 60.00344 * 22 21 19 24 24 C 1.53002 * 109.46748 * 179.97438 * 22 21 19 25 25 C 1.52991 * 109.47238 * 300.00055 * 22 21 19 26 26 N 1.28649 * 110.57701 * 359.83284 * 16 15 14 27 27 H 1.09004 * 109.46862 * 96.34808 * 1 2 3 28 28 H 1.09000 * 109.47645 * 216.34576 * 1 2 3 29 29 H 1.08999 * 109.47223 * 336.35002 * 1 2 3 30 30 H 0.97005 * 120.00014 * 180.02562 * 6 5 3 31 31 H 1.07999 * 125.58971 * 0.03198 * 14 13 11 32 32 H 1.08998 * 109.46925 * 29.97875 * 17 16 15 33 33 H 1.08995 * 109.46779 * 149.97171 * 17 16 15 34 34 H 0.96998 * 120.00500 * 359.97438 * 18 17 16 35 35 H 1.08999 * 109.47559 * 59.99933 * 23 22 21 36 36 H 1.09008 * 109.46827 * 179.97438 * 23 22 21 37 37 H 1.09002 * 109.47198 * 299.99368 * 23 22 21 38 38 H 1.09003 * 109.47272 * 60.00485 * 24 22 21 39 39 H 1.09008 * 109.46986 * 179.97438 * 24 22 21 40 40 H 1.08999 * 109.47490 * 299.99881 * 24 22 21 41 41 H 1.09002 * 109.47305 * 60.00411 * 25 22 21 42 42 H 1.09008 * 109.47157 * 180.02562 * 25 22 21 43 43 H 1.09003 * 109.47167 * 299.99751 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1564 1.2283 0.3888 5 6 1.5471 2.3363 -0.4950 6 7 0.3486 2.2720 -1.0301 7 14 2.4407 3.9740 -0.3997 8 1 3.2506 4.1682 -1.6291 9 1 1.4490 5.0730 -0.2814 10 1 3.3330 3.9827 0.7874 11 6 2.1388 -1.1672 0.0005 12 8 3.3528 -1.1688 -0.0814 13 6 1.4063 -2.4397 0.1002 14 6 2.0179 -3.6336 0.2775 15 16 0.8275 -4.8587 0.3429 16 6 -0.4161 -3.7093 0.1217 17 6 -1.8858 -4.0367 0.0580 18 7 -2.2670 -4.3027 -1.3312 19 6 -3.5423 -4.6195 -1.6312 20 8 -4.3757 -4.6840 -0.7494 21 8 -3.8927 -4.8634 -2.9080 22 6 -5.2835 -5.1981 -3.1573 23 6 -6.1760 -4.0428 -2.6995 24 6 -5.4896 -5.4390 -4.6541 25 6 -5.6503 -6.4645 -2.3812 26 7 0.0759 -2.5252 0.0175 27 1 -0.3633 -0.1136 -1.0214 28 1 -0.3634 -0.8277 0.6090 29 1 -0.3633 0.9413 0.4122 30 1 -0.0719 3.0749 -1.3759 31 1 3.0833 -3.7873 0.3644 32 1 -2.0882 -4.9186 0.6656 33 1 -2.4625 -3.1935 0.4381 34 1 -1.6018 -4.2508 -2.0352 35 1 -5.9147 -3.1406 -3.2525 36 1 -7.2201 -4.2939 -2.8871 37 1 -6.0293 -3.8707 -1.6332 38 1 -4.8538 -6.2619 -4.9807 39 1 -6.5336 -5.6907 -4.8413 40 1 -5.2284 -4.5365 -5.2068 41 1 -5.5036 -6.2924 -1.3148 42 1 -6.6943 -6.7160 -2.5687 43 1 -5.0145 -7.2876 -2.7073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264743342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = -47.925600 kcal Electronic energy + Delta-G solvation = -27315.661266 eV Core-core repulsion = 23296.281569 eV Total energy + Delta-G solvation = -4019.379698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89709 -39.98873 -37.90285 -37.36186 -35.09177 -34.73513 -34.10541 -31.65538 -30.71577 -27.63791 -27.57350 -27.56581 -26.59014 -25.15611 -23.66641 -22.41704 -20.83635 -20.17503 -19.24012 -18.45662 -17.89086 -16.84272 -16.81326 -16.34500 -15.73274 -15.39471 -15.16258 -14.74995 -14.71149 -14.55818 -14.16103 -13.97525 -13.66415 -13.50523 -13.13844 -12.75680 -12.67273 -12.53296 -12.30540 -12.12057 -12.09630 -11.99307 -11.61914 -11.58289 -11.51033 -11.34151 -11.17035 -10.88212 -10.54346 -10.42946 -10.38891 -10.22953 -9.50336 -9.35672 -9.20246 -8.94684 -8.67158 -8.57306 -7.70371 -6.36831 -3.94041 0.68292 1.40868 1.84106 1.99762 2.61143 2.72558 3.17056 3.21369 3.26038 3.94538 4.04306 4.09323 4.30704 4.49619 4.54458 4.68475 4.83642 5.01285 5.15528 5.23683 5.31823 5.34421 5.36057 5.46133 5.51463 5.58332 5.64997 5.65128 5.76009 5.80505 5.94307 6.08308 6.20578 6.25099 6.37069 6.93522 7.13060 7.25112 7.42328 7.50698 7.75919 8.07700 8.23593 8.44200 9.09179 9.33560 9.92576 10.60546 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.002849 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.807010 B = 9826.435550 C =11554.114506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.411 5.411 3 C -0.299 4.299 4 H 0.101 0.899 5 C 0.031 3.969 6 N -0.867 5.867 7 Si 0.934 3.066 8 H -0.275 1.275 9 H -0.281 1.281 10 H -0.268 1.268 11 C 0.490 3.510 12 O -0.593 6.593 13 C 0.049 3.951 14 C -0.236 4.236 15 S 0.184 5.816 16 C -0.024 4.024 17 C 0.226 3.774 18 N -0.705 5.705 19 C 0.656 3.344 20 O -0.568 6.568 21 O -0.363 6.363 22 C 0.136 3.864 23 C -0.185 4.185 24 C -0.141 4.141 25 C -0.183 4.183 26 N -0.402 5.402 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.270 0.730 31 H 0.185 0.815 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.410 0.590 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.286 -17.151 -2.504 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.125 5.125 3 C -0.428 4.428 4 H 0.119 0.881 5 C -0.174 4.174 6 N -0.505 5.505 7 Si 0.760 3.240 8 H -0.201 1.201 9 H -0.207 1.207 10 H -0.192 1.192 11 C 0.277 3.723 12 O -0.480 6.480 13 C -0.085 4.085 14 C -0.379 4.379 15 S 0.439 5.561 16 C -0.302 4.302 17 C 0.100 3.900 18 N -0.365 5.365 19 C 0.409 3.591 20 O -0.458 6.458 21 O -0.278 6.278 22 C 0.100 3.900 23 C -0.242 4.242 24 C -0.199 4.199 25 C -0.240 4.240 26 N -0.120 5.120 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.202 0.798 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.245 0.755 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.703 -17.612 -2.178 21.824 hybrid contribution 1.026 1.791 -0.509 2.126 sum -11.677 -15.822 -2.688 19.847 Atomic orbital electron populations 1.22028 0.79548 1.01078 1.01131 1.43590 1.06739 1.04201 1.57951 1.19789 1.00532 0.84090 1.38398 0.88109 1.25503 0.96200 1.00395 0.95282 1.70059 1.13847 1.29864 1.36776 0.85811 0.78893 0.80192 0.79128 1.20074 1.20672 1.19215 1.16832 0.86629 0.81637 0.87248 1.90634 1.12872 1.86012 1.58475 1.21060 0.87278 0.96659 1.03548 1.26495 1.06269 0.95549 1.09557 1.82507 0.96429 1.12174 1.65033 1.26989 1.00997 0.92606 1.09609 1.19559 0.86301 1.02859 0.81270 1.44669 1.08108 1.73572 1.10152 1.17923 0.83144 0.76389 0.81657 1.90902 1.49493 1.57373 1.47991 1.86319 1.31951 1.82392 1.27116 1.22077 0.76436 0.95372 0.96158 1.22531 0.99317 0.97570 1.04783 1.21868 1.02520 1.03131 0.92336 1.22518 1.02007 0.96168 1.03327 1.67553 1.11224 1.21063 1.12147 0.93532 0.92228 0.90526 0.91941 0.79752 0.88980 0.87987 0.75490 0.91973 0.91207 0.89241 0.91497 0.90169 0.91338 0.89296 0.91193 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.57 7.78 59.85 0.47 3.04 16 2 N -0.41 -11.08 3.02 -123.51 -0.37 -11.45 16 3 C -0.30 -8.47 9.25 -14.99 -0.14 -8.61 16 4 H 0.10 2.93 7.46 -52.49 -0.39 2.53 16 5 C 0.03 0.82 5.23 -17.46 -0.09 0.73 16 6 N -0.87 -23.29 10.37 55.50 0.58 -22.71 16 7 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 8 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 C 0.49 12.72 7.59 -12.64 -0.10 12.62 16 12 O -0.59 -16.93 16.48 5.22 0.09 -16.85 16 13 C 0.05 1.01 6.48 -84.53 -0.55 0.46 16 14 C -0.24 -3.93 10.63 29.69 0.32 -3.61 16 15 S 0.18 2.19 22.92 -107.50 -2.46 -0.27 16 16 C -0.02 -0.33 6.71 -13.61 -0.09 -0.42 16 17 C 0.23 2.64 6.24 -5.19 -0.03 2.61 16 18 N -0.70 -8.29 5.55 -66.47 -0.37 -8.66 16 19 C 0.66 8.40 8.06 54.06 0.44 8.83 16 20 O -0.57 -8.10 11.88 -19.28 -0.23 -8.33 16 21 O -0.36 -4.33 9.94 -40.31 -0.40 -4.73 16 22 C 0.14 1.32 1.13 -90.62 -0.10 1.22 16 23 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 24 C -0.14 -1.02 8.85 37.16 0.33 -0.70 16 25 C -0.18 -1.63 8.37 37.15 0.31 -1.32 16 26 N -0.40 -7.34 6.78 -8.51 -0.06 -7.40 16 27 H 0.05 1.18 7.97 -51.93 -0.41 0.76 16 28 H 0.06 1.32 5.25 -51.93 -0.27 1.04 16 29 H 0.08 1.96 6.34 -51.93 -0.33 1.63 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.19 2.93 8.04 -52.49 -0.42 2.51 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.41 4.57 8.57 -40.82 -0.35 4.22 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 37 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 42 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -32.74 369.49 -7.35 -40.09 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.73 Total: 5.74 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 1.07 Total: 13.35 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.22 Total: -50.23 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.54 Total: -29.91 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.46 Total: -0.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.74 -7.35 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264743342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.839 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds