Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47048 * 2 1 4 4 H 1.09000 * 109.46603 * 55.00316 * 3 2 1 5 5 C 1.50703 * 109.46844 * 175.00133 * 3 2 1 6 6 H 1.08001 * 119.99580 * 120.00420 * 5 3 2 7 7 C 1.37879 * 120.00008 * 299.99891 * 5 3 2 8 8 N 1.31511 * 120.00010 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99615 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46713 * 90.00730 * 9 7 5 11 11 H 1.48505 * 109.47039 * 210.00151 * 9 7 5 12 12 H 1.48493 * 109.47537 * 330.00230 * 9 7 5 13 13 N 1.46493 * 109.47094 * 295.00085 * 3 2 1 14 14 C 1.34784 * 119.99864 * 85.00501 * 13 3 2 15 15 O 1.21581 * 119.99584 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99921 * 179.97438 * 14 13 3 17 17 C 1.39005 * 119.99690 * 179.97438 * 16 14 13 18 18 N 1.29624 * 124.94234 * 179.97438 * 17 16 14 19 19 C 1.32023 * 116.90982 * 179.97438 * 18 17 16 20 20 C 1.50701 * 122.71704 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47142 * 305.02695 * 20 19 18 22 22 C 1.50701 * 109.46833 * 179.97438 * 21 20 19 23 23 O 1.20823 * 119.99957 * 0.02562 * 22 21 20 24 24 O 1.34234 * 119.99605 * 180.02562 * 22 21 20 25 25 C 1.45203 * 116.99642 * 180.02562 * 24 22 21 26 26 C 1.33411 * 114.56769 * 0.02562 * 19 18 17 27 27 S 1.70968 * 124.94707 * 359.97438 * 17 16 14 28 28 H 1.09000 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47005 * 299.99464 * 1 2 3 30 30 H 1.08998 * 109.47076 * 60.00126 * 1 2 3 31 31 H 1.09007 * 109.47037 * 240.00263 * 2 1 3 32 32 H 1.08998 * 109.47357 * 120.00604 * 2 1 3 33 33 H 0.96998 * 120.00137 * 180.02562 * 8 7 5 34 34 H 0.96994 * 120.00497 * 264.99880 * 13 3 2 35 35 H 0.97003 * 120.00197 * 359.97438 * 16 14 13 36 36 H 1.08998 * 109.46783 * 65.03149 * 20 19 18 37 37 H 1.09007 * 109.47066 * 185.02871 * 20 19 18 38 38 H 1.08993 * 109.47105 * 300.00377 * 21 20 19 39 39 H 1.08997 * 109.46887 * 60.00041 * 21 20 19 40 40 H 1.09003 * 109.46745 * 180.02562 * 25 24 22 41 41 H 1.09004 * 109.46547 * 299.99616 * 25 24 22 42 42 H 1.08996 * 109.47355 * 59.99890 * 25 24 22 43 43 H 1.08001 * 125.96498 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8800 1.3809 10 1 6.4428 2.1128 2.0836 11 1 6.4391 -0.3112 2.1543 12 1 6.6131 0.8394 0.0268 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3414 2.6319 -0.4319 16 7 0.0787 3.2675 -2.5182 17 6 -1.1770 3.8518 -2.6370 18 7 -1.6178 4.4554 -3.6961 19 6 -2.8388 4.9538 -3.6351 20 6 -3.4803 5.6809 -4.7888 21 6 -2.5767 6.8337 -5.2309 22 6 -3.2179 7.5604 -6.3849 23 8 -4.2881 7.1942 -6.8098 24 8 -2.6001 8.6146 -6.9407 25 6 -3.2765 9.2664 -8.0480 26 6 -3.4584 4.7625 -2.4692 27 16 -2.3648 3.8789 -1.4077 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8293 -0.0612 2.9498 34 1 2.2718 2.1232 -1.9977 35 1 0.6984 3.2938 -3.2640 36 1 -3.6214 4.9903 -5.6202 37 1 -4.4471 6.0762 -4.4767 38 1 -2.4356 7.5242 -4.3994 39 1 -1.6100 6.4385 -5.5429 40 1 -2.6707 10.0999 -8.4037 41 1 -3.4204 8.5509 -8.8576 42 1 -4.2455 9.6373 -7.7143 43 1 -4.4562 5.0921 -2.2196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274649787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = -74.494486 kcal Electronic energy + Delta-G solvation = -26491.538181 eV Core-core repulsion = 22471.006370 eV Total energy + Delta-G solvation = -4020.531811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78486 -40.31503 -39.39398 -36.89284 -35.83468 -34.67746 -33.31049 -32.48603 -30.98790 -29.55721 -28.07516 -27.10787 -25.46089 -24.02810 -22.94501 -21.45898 -21.03841 -20.18808 -19.58649 -18.42822 -17.74828 -17.55462 -17.00116 -16.83775 -16.50037 -16.00596 -15.69687 -15.22318 -14.70150 -14.55250 -14.27636 -14.08589 -13.71537 -13.42005 -13.16131 -12.93491 -12.77372 -12.65869 -12.40668 -12.10580 -11.70376 -11.59427 -11.35454 -11.27742 -11.12918 -10.99856 -10.93471 -10.76587 -10.58255 -10.40719 -10.28046 -9.74082 -9.61160 -9.56303 -9.18262 -8.99351 -8.62236 -8.28336 -7.85035 -6.22232 -4.32235 0.98000 1.37116 1.92768 2.08222 2.40945 2.66619 2.81643 3.19221 3.26702 3.28042 3.57351 4.22362 4.33258 4.55589 4.74579 4.75805 4.78448 4.82204 4.88975 5.09987 5.14539 5.26581 5.39627 5.50571 5.75069 5.81297 5.99305 6.09859 6.30793 6.36078 6.39235 6.53585 6.68285 6.95709 7.14531 7.15165 7.26862 7.44741 7.52798 7.64284 7.77593 7.91162 8.05944 8.47807 8.63853 8.89598 9.34942 10.83049 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.002091 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.994341 B =13386.856777 C =14406.397640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.285 3.715 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.690 3.310 15 O -0.558 6.558 16 N -0.643 5.643 17 C 0.280 3.720 18 N -0.531 5.531 19 C 0.089 3.911 20 C -0.026 4.026 21 C -0.106 4.106 22 C 0.462 3.538 23 O -0.510 6.510 24 O -0.361 6.361 25 C 0.035 3.965 26 C -0.335 4.335 27 S 0.259 5.741 28 H 0.024 0.976 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.102 0.898 33 H 0.266 0.734 34 H 0.391 0.609 35 H 0.415 0.585 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.273 12.066 -14.252 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.184 3.816 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.354 5.354 14 C 0.389 3.611 15 O -0.436 6.436 16 N -0.296 5.296 17 C -0.089 4.089 18 N -0.255 5.255 19 C -0.044 4.044 20 C -0.066 4.066 21 C -0.144 4.144 22 C 0.306 3.694 23 O -0.398 6.398 24 O -0.277 6.277 25 C -0.059 4.059 26 C -0.476 4.476 27 S 0.510 5.490 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.224 0.776 35 H 0.252 0.748 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.812 11.371 -12.677 20.725 hybrid contribution 1.192 0.477 -1.646 2.088 sum -10.620 11.848 -14.323 21.408 Atomic orbital electron populations 1.21828 0.98209 0.98247 1.01157 1.21981 0.92733 0.99620 1.02545 1.18867 0.94372 0.89021 0.79353 0.92826 1.21175 0.90349 1.39517 1.06540 0.91950 1.24868 0.98761 0.94633 0.95306 1.69879 1.35263 1.37250 1.09288 0.86418 0.84555 0.77718 0.78241 1.20512 1.21019 1.19842 1.45846 1.12378 1.57433 1.19785 1.16076 0.84480 0.79137 0.81370 1.90836 1.51170 1.64229 1.37321 1.42168 1.13107 1.56908 1.17429 1.23142 0.92494 0.98138 0.95118 1.66073 1.15200 1.17591 1.26667 1.19429 0.89241 1.00346 0.95368 1.19905 0.96949 0.94762 0.95015 1.21348 1.01452 0.97240 0.94372 1.23965 0.83714 0.78168 0.83563 1.90669 1.22074 1.65082 1.61999 1.86532 1.50830 1.43272 1.47115 1.23265 0.98136 0.97233 0.87262 1.27281 1.07362 1.13292 0.99672 1.85268 1.01987 1.49624 1.12141 0.95692 0.92914 0.94558 0.94888 0.87980 0.92399 0.77616 0.74782 0.89517 0.89450 0.87559 0.86606 0.88121 0.91886 0.91905 0.81256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.51 37.16 0.32 -2.55 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.29 6.62 2.24 -69.08 -0.15 6.47 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.29 8.73 -34.44 -0.30 -13.59 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.44 11.29 55.43 0.63 -22.82 16 9 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 N -0.70 -13.18 5.03 -59.81 -0.30 -13.48 16 14 C 0.69 12.51 7.10 -86.91 -0.62 11.89 16 15 O -0.56 -11.52 10.94 5.29 0.06 -11.46 16 16 N -0.64 -9.54 5.41 -17.47 -0.09 -9.64 16 17 C 0.28 4.24 8.19 -87.34 -0.72 3.52 16 18 N -0.53 -7.46 10.39 -11.28 -0.12 -7.58 16 19 C 0.09 1.10 6.07 -84.20 -0.51 0.59 16 20 C -0.03 -0.26 5.00 -27.88 -0.14 -0.40 16 21 C -0.11 -0.95 5.71 -27.88 -0.16 -1.11 16 22 C 0.46 4.67 7.96 36.01 0.29 4.96 16 23 O -0.51 -6.34 15.73 -18.75 -0.29 -6.63 16 24 O -0.36 -3.35 10.57 -39.27 -0.41 -3.76 16 25 C 0.03 0.22 10.56 101.05 1.07 1.29 16 26 C -0.33 -4.02 11.05 29.05 0.32 -3.70 16 27 S 0.26 3.79 20.21 -107.50 -2.17 1.62 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 30 H 0.04 0.74 5.64 -51.93 -0.29 0.44 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 33 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.39 6.23 8.55 -40.82 -0.35 5.89 16 35 H 0.41 4.98 8.84 -40.82 -0.36 4.62 16 36 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.09 0.78 7.98 -51.93 -0.41 0.36 16 38 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.12 1.05 8.07 -51.93 -0.42 0.63 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 42 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 43 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -29.85 373.78 -8.81 -38.66 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.87 Total: 8.80 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.85 Total: 5.91 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.11 Total: -53.51 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.65 Total: -21.85 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -2.17 Total: 1.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.85 -8.81 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274649787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.835 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds