Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47283 * 77.27534 * 3 2 1 5 5 C 1.36931 * 119.99829 * 264.22894 * 4 3 2 6 6 H 1.08002 * 119.99750 * 196.87195 * 5 4 3 7 7 C 1.38813 * 120.00552 * 16.86576 * 5 4 3 8 8 N 1.31615 * 119.99351 * 22.15090 * 7 5 4 9 9 Si 1.86800 * 120.00170 * 202.15089 * 7 5 4 10 10 H 1.48498 * 109.47001 * 89.99932 * 9 7 5 11 11 H 1.48501 * 109.46874 * 209.99745 * 9 7 5 12 12 H 1.48497 * 109.47214 * 330.00009 * 9 7 5 13 13 C 1.46498 * 119.99597 * 84.22601 * 4 3 2 14 14 C 1.53005 * 109.47337 * 269.99603 * 13 4 3 15 15 C 1.50697 * 109.47077 * 180.02562 * 14 13 4 16 16 N 1.30354 * 125.48311 * 89.98498 * 15 14 13 17 17 C 1.34136 * 108.90423 * 180.02562 * 16 15 14 18 18 C 1.35769 * 107.51424 * 359.97438 * 17 16 15 19 19 C 1.47830 * 126.58146 * 180.26462 * 18 17 16 20 20 C 1.39590 * 120.14459 * 179.68567 * 19 18 17 21 21 C 1.37938 * 119.85444 * 179.97438 * 20 19 18 22 22 C 1.38380 * 120.14330 * 359.97335 * 21 20 19 23 23 C 1.38333 * 120.29579 * 0.02562 * 22 21 20 24 24 N 1.48013 * 119.92989 * 180.02562 * 23 22 21 25 25 O 1.21806 * 120.00180 * 359.97438 * 24 23 22 26 26 O 1.21802 * 120.00039 * 180.02562 * 24 23 22 27 27 C 1.37984 * 120.14305 * 359.74141 * 23 22 21 28 28 O 1.33998 * 125.47912 * 269.99865 * 15 14 13 29 29 H 4.40641 * 5.51319 * 180.02562 * 4 1 2 30 30 H 1.09006 * 109.47326 * 317.27412 * 3 2 1 31 31 H 1.09008 * 109.46892 * 197.27511 * 3 2 1 32 32 H 0.97001 * 119.99439 * 180.02562 * 8 7 5 33 33 H 1.09009 * 109.46595 * 150.00230 * 13 4 3 34 34 H 1.08996 * 109.47711 * 30.00120 * 13 4 3 35 35 H 1.08998 * 109.46304 * 60.00522 * 14 13 4 36 36 H 1.08996 * 109.47142 * 300.00865 * 14 13 4 37 37 H 1.08001 * 126.24327 * 180.02562 * 17 16 15 38 38 H 1.07998 * 120.07706 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.92849 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.85527 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.07578 * 180.25195 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3034 -1.3473 5 6 3.4757 -1.5875 -1.6782 6 1 4.0808 -1.7772 -2.5525 7 6 3.0442 -2.6455 -0.8900 8 7 1.9905 -2.5013 -0.1146 9 14 3.9587 -4.2738 -0.9300 10 1 5.0276 -4.2666 0.1008 11 1 3.0097 -5.3815 -0.6513 12 1 4.5659 -4.4678 -2.2712 13 6 3.2578 0.7666 -2.3404 14 6 1.9478 0.8915 -3.1209 15 6 2.0750 1.9916 -4.1429 16 7 2.4960 1.8419 -5.3674 17 6 2.4762 3.0337 -5.9826 18 6 2.0210 3.9478 -5.0879 19 6 1.8277 5.3938 -5.3267 20 6 1.3430 6.2141 -4.3066 21 6 1.1653 7.5627 -4.5358 22 6 1.4671 8.1028 -5.7736 23 6 1.9479 7.2955 -6.7888 24 7 2.2685 7.8819 -8.1095 25 8 2.1086 9.0740 -8.3016 26 8 2.6915 7.1722 -9.0044 27 6 2.1346 5.9458 -6.5712 28 8 1.7736 3.2812 -3.9389 29 1 -1.0499 0.0002 -0.0001 30 1 3.0097 -0.7541 0.6973 31 1 3.0089 0.9822 0.3052 32 1 1.6892 -3.2405 0.4365 33 1 4.0698 0.5315 -3.0286 34 1 3.4710 1.7085 -1.8352 35 1 1.1359 1.1264 -2.4327 36 1 1.7347 -0.0505 -3.6261 37 1 2.7683 3.2302 -7.0037 38 1 1.1075 5.7939 -3.3399 39 1 0.7900 8.1984 -3.7475 40 1 1.3267 9.1594 -5.9478 41 1 2.5139 5.3173 -7.3633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281457091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = 115.875877 kcal Electronic energy + Delta-G solvation = -27517.315489 eV Core-core repulsion = 23369.594805 eV Total energy + Delta-G solvation = -4147.720684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.47065 -43.30855 -40.45603 -38.27614 -37.74170 -36.00505 -34.81850 -33.72861 -33.39712 -33.03799 -31.81322 -29.06287 -27.92822 -27.75731 -26.08102 -24.88046 -23.68990 -22.97748 -22.63822 -21.92073 -20.42249 -19.76560 -19.35713 -18.66761 -18.44897 -18.00494 -17.83572 -17.49179 -16.86319 -16.62405 -16.44628 -15.78074 -15.64945 -15.09783 -14.98569 -14.56343 -14.45552 -14.35350 -14.13011 -13.42539 -13.40115 -13.29418 -13.05084 -12.93808 -12.72604 -12.68398 -12.51416 -12.34542 -12.34269 -12.19853 -12.12331 -11.80042 -11.67929 -11.35201 -10.78239 -10.71116 -10.68945 -10.29772 -9.41583 -8.97704 -7.85506 -5.26939 -1.34080 -0.71454 0.17209 0.23077 0.62082 1.34941 1.49217 1.52469 1.54665 1.59315 2.25535 2.32162 2.54589 2.61413 2.87349 3.21810 3.28181 3.35109 3.49049 3.59507 3.78098 3.81884 3.85994 4.01387 4.11231 4.19627 4.36726 4.38789 4.50329 4.55158 4.62129 4.70601 4.87186 4.92574 4.96314 5.02279 5.08904 5.09364 5.22701 5.33428 5.34236 5.65515 5.70898 6.26877 6.40307 6.60166 7.08556 7.37475 7.78791 8.19999 9.15640 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023195 B = 0.002060 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.879199 B =13588.385792 C =14455.188095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.128 4.128 3 C 0.265 3.735 4 N -0.593 5.593 5 C -0.271 4.271 6 H 0.075 0.925 7 C -0.040 4.040 8 N -0.908 5.908 9 Si 0.958 3.042 10 H -0.285 1.285 11 H -0.301 1.301 12 H -0.275 1.275 13 C 0.160 3.840 14 C -0.037 4.037 15 C 0.224 3.776 16 N -0.510 5.510 17 C -0.013 4.013 18 C -0.035 4.035 19 C -0.008 4.008 20 C -0.049 4.049 21 C -0.092 4.092 22 C -0.043 4.043 23 C -0.053 4.053 24 N 0.031 4.969 25 O -0.159 6.159 26 O -0.190 6.190 27 C -0.041 4.041 28 O -0.195 6.195 29 H 0.219 0.781 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.248 0.752 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.212 0.788 38 H 0.160 0.840 39 H 0.194 0.806 40 H 0.178 0.822 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 22.603 -6.824 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.131 4.131 3 C 0.140 3.860 4 N -0.312 5.312 5 C -0.401 4.401 6 H 0.093 0.907 7 C -0.237 4.237 8 N -0.552 5.552 9 Si 0.788 3.212 10 H -0.212 1.212 11 H -0.229 1.229 12 H -0.200 1.200 13 C 0.032 3.968 14 C -0.078 4.078 15 C 0.018 3.982 16 N -0.239 5.239 17 C -0.153 4.153 18 C -0.088 4.088 19 C -0.010 4.010 20 C -0.068 4.068 21 C -0.110 4.110 22 C -0.062 4.062 23 C -0.136 4.136 24 N 0.547 4.453 25 O -0.377 6.377 26 O -0.400 6.400 27 C -0.060 4.060 28 O -0.083 6.083 29 H 0.235 0.765 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.229 0.771 38 H 0.177 0.823 39 H 0.211 0.789 40 H 0.195 0.805 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.525 21.574 -6.314 22.620 hybrid contribution -0.182 -0.845 -0.334 0.926 sum -2.708 20.729 -6.648 21.937 Atomic orbital electron populations 1.24944 0.96290 1.07003 1.02922 1.24547 0.95916 0.94852 0.97808 1.17852 0.83002 0.98169 0.86977 1.44371 1.74375 1.04743 1.07680 1.19461 1.25881 0.83329 1.11428 0.90731 1.25512 0.97093 1.00382 1.00683 1.70267 1.22433 1.31945 1.30604 0.85413 0.77952 0.79968 0.77915 1.21172 1.22852 1.19982 1.20956 0.93271 0.91752 0.90819 1.20987 1.03299 0.90619 0.92869 1.26691 0.95575 0.82133 0.93759 1.70472 1.20165 1.27537 1.05703 1.23899 1.02327 0.86735 1.02309 1.21257 1.08743 0.93522 0.85232 1.17283 1.02763 0.86855 0.94061 1.22092 0.91417 0.94136 0.99105 1.21583 0.98228 0.94483 0.96668 1.21596 0.91704 1.02231 0.90693 1.20965 1.13651 0.94622 0.84329 1.43839 0.97553 1.00733 1.03193 1.94520 1.56383 0.98768 1.88051 1.94571 1.47825 1.59994 1.37576 1.20793 0.95281 0.92734 0.97233 1.84430 1.66286 1.21365 1.36189 0.76466 0.90998 0.91274 0.94242 0.92649 0.91405 0.89691 0.89655 0.77096 0.82272 0.78885 0.80463 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.03 19.25 74.32 1.43 -10.60 16 2 C -0.13 -5.71 10.54 31.12 0.33 -5.38 16 3 C 0.26 11.58 5.45 84.57 0.46 12.04 16 4 N -0.59 -26.71 2.50 -712.53 -1.78 -28.50 16 5 C -0.27 -13.78 9.66 84.03 0.81 -12.97 16 6 H 0.07 3.77 7.90 -2.91 -0.02 3.75 16 7 C -0.04 -2.07 4.85 84.86 0.41 -1.66 16 8 N -0.91 -49.54 9.50 21.65 0.21 -49.34 16 9 Si 0.96 43.09 29.61 68.60 2.03 45.12 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.16 5.91 5.68 86.38 0.49 6.40 16 14 C -0.04 -1.30 6.02 29.85 0.18 -1.12 16 15 C 0.22 7.13 7.58 88.33 0.67 7.80 16 16 N -0.51 -16.44 11.27 -302.88 -3.41 -19.85 16 17 C -0.01 -0.31 11.29 83.77 0.95 0.63 16 18 C -0.03 -0.80 7.07 24.24 0.17 -0.63 16 19 C -0.01 -0.13 5.87 -20.09 -0.12 -0.25 16 20 C -0.05 -0.56 9.73 22.53 0.22 -0.34 16 21 C -0.09 -0.56 10.03 22.23 0.22 -0.34 16 22 C -0.04 -0.40 9.55 22.33 0.21 -0.19 16 23 C -0.05 -0.82 6.84 36.34 0.25 -0.57 16 24 N 0.03 0.63 4.45 -46.56 -0.21 0.42 16 25 O -0.16 -3.36 18.44 18.88 0.35 -3.01 16 26 O -0.19 -4.50 18.44 18.88 0.35 -4.15 16 27 C -0.04 -0.65 9.08 22.53 0.20 -0.44 16 28 O -0.20 -5.38 10.59 -7.77 -0.08 -5.46 16 29 H 0.22 7.27 7.80 -4.42 -0.03 7.23 16 30 H 0.07 3.54 6.42 -2.38 -0.02 3.52 16 31 H 0.07 2.53 7.98 -2.38 -0.02 2.51 16 32 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 33 H 0.06 2.09 8.03 -2.38 -0.02 2.07 16 34 H 0.07 2.19 7.95 -2.39 -0.02 2.17 16 35 H 0.08 3.08 7.20 -2.39 -0.02 3.06 16 36 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.21 3.74 7.30 -2.91 -0.02 3.72 16 38 H 0.16 1.55 7.95 -2.91 -0.02 1.53 16 39 H 0.19 -0.26 8.06 -2.91 -0.02 -0.29 16 40 H 0.18 0.93 7.60 -2.91 -0.02 0.91 16 41 H 0.16 2.34 6.59 -2.91 -0.02 2.32 16 Total: -1.00 -65.64 371.85 5.41 -60.22 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.07 Total: 12.15 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 6.89 Total: -7.60 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -5.20 Total: -97.26 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.61 Total: -12.63 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.64 5.41 -60.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281457091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.101 kcal (2) G-P(sol) polarization free energy of solvation -65.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds