Wall clock time and date at job start Sat Apr 11 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47467 * 290.65029 * 3 2 1 5 5 C 1.36870 * 119.99895 * 275.01564 * 4 3 2 6 6 H 1.07997 * 119.99627 * 188.12779 * 5 4 3 7 7 C 1.39045 * 120.00092 * 8.12637 * 5 4 3 8 8 N 1.31365 * 119.99946 * 14.79244 * 7 5 4 9 9 Si 1.86801 * 119.99822 * 194.79058 * 7 5 4 10 10 H 1.48507 * 109.46981 * 90.00173 * 9 7 5 11 11 H 1.48500 * 109.47184 * 209.99965 * 9 7 5 12 12 H 1.48494 * 109.47258 * 330.00247 * 9 7 5 13 13 C 1.34775 * 119.99503 * 95.00993 * 4 3 2 14 14 O 1.21602 * 119.99433 * 184.99531 * 13 4 3 15 15 C 1.47738 * 120.00679 * 4.98913 * 13 4 3 16 16 C 1.39677 * 120.12122 * 130.45101 * 15 13 4 17 17 C 1.37943 * 119.95487 * 180.02562 * 16 15 13 18 18 C 1.38303 * 120.21704 * 359.73446 * 17 16 15 19 19 C 1.38831 * 120.24528 * 0.52470 * 18 17 16 20 20 O 1.35919 * 119.97872 * 179.75978 * 19 18 17 21 21 C 1.42903 * 116.99863 * 359.72071 * 20 19 18 22 22 C 1.50699 * 109.46734 * 179.97438 * 21 20 19 23 23 N 1.29944 * 126.28638 * 270.02396 * 22 21 20 24 24 O 1.21306 * 110.24805 * 179.69084 * 23 22 21 25 25 C 1.33647 * 109.81042 * 0.46653 * 24 23 22 26 26 C 1.50694 * 126.54771 * 179.80578 * 25 24 23 27 27 N 1.31132 * 106.89508 * 359.54107 * 25 24 23 28 28 C 1.38465 * 120.04171 * 359.47863 * 19 18 17 29 29 H 4.40646 * 5.51369 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.47077 * 170.65265 * 3 2 1 31 31 H 1.09005 * 109.47508 * 50.65176 * 3 2 1 32 32 H 0.97005 * 119.99755 * 179.97438 * 8 7 5 33 33 H 1.07999 * 120.02095 * 0.02562 * 16 15 13 34 34 H 1.08005 * 119.89101 * 180.02562 * 17 16 15 35 35 H 1.07993 * 119.87604 * 180.25578 * 18 17 16 36 36 H 1.09000 * 109.47045 * 60.00061 * 21 20 19 37 37 H 1.08998 * 109.47300 * 299.99931 * 21 20 19 38 38 H 1.08994 * 109.47353 * 269.68326 * 26 25 24 39 39 H 1.09002 * 109.47862 * 29.69080 * 26 25 24 40 40 H 1.09007 * 109.46702 * 149.68817 * 26 25 24 41 41 H 1.08000 * 120.11379 * 180.23459 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1346 -0.4862 1.2925 5 6 3.2646 0.3790 2.3450 6 1 3.7459 0.0535 3.2553 7 6 2.7771 1.6772 2.2421 8 7 1.9470 1.9923 1.2740 9 14 3.3026 2.9730 3.4807 10 1 4.5256 3.6586 2.9911 11 1 2.2123 3.9668 3.6501 12 1 3.5878 2.3239 4.7854 13 6 3.4559 -1.7862 1.4450 14 8 3.7744 -2.2093 2.5397 15 6 3.4211 -2.6972 0.2825 16 6 4.5109 -3.5271 0.0094 17 6 4.4749 -4.3760 -1.0773 18 6 3.3604 -4.4127 -1.8953 19 6 2.2745 -3.5878 -1.6350 20 8 1.1839 -3.6247 -2.4453 21 6 1.2262 -4.5314 -3.5491 22 6 -0.0601 -4.4346 -4.3282 23 7 -1.1362 -5.1344 -4.1260 24 8 -1.9991 -4.8155 -4.9167 25 6 -1.5381 -3.8599 -5.7294 26 6 -2.2929 -3.1947 -6.8513 27 7 -0.3053 -3.6078 -5.3603 28 6 2.2994 -2.7316 -0.5471 29 1 -1.0500 -0.0002 0.0000 30 1 3.0088 1.0149 -0.1669 31 1 3.0096 -0.6508 -0.7947 32 1 1.6067 2.8978 1.2024 33 1 5.3811 -3.5041 0.6486 34 1 5.3181 -5.0175 -1.2873 35 1 3.3365 -5.0823 -2.7422 36 1 1.3507 -5.5490 -3.1789 37 1 2.0642 -4.2756 -4.1975 38 1 -2.1329 -3.7492 -7.7758 39 1 -3.3570 -3.1810 -6.6153 40 1 -1.9349 -2.1725 -6.9741 41 1 1.4537 -2.0921 -0.3414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281464529.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:00 Heat of formation + Delta-G solvation = 114.497406 kcal Electronic energy + Delta-G solvation = -28507.406774 eV Core-core repulsion = 24359.626315 eV Total energy + Delta-G solvation = -4147.780459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.93731 -40.20361 -38.83307 -36.97465 -36.09425 -35.24571 -33.97670 -32.29202 -31.32521 -30.70940 -30.07959 -29.27522 -28.13275 -26.48608 -25.10286 -24.02458 -22.94166 -22.18904 -21.67090 -19.77153 -18.52479 -17.96663 -17.87758 -17.62455 -16.56177 -16.26972 -16.04800 -15.80293 -15.73199 -14.97409 -14.71971 -14.37901 -14.16027 -13.88597 -13.85292 -13.49272 -13.40473 -13.09521 -12.67633 -12.64834 -12.39858 -12.21476 -12.12406 -11.90359 -11.53756 -11.44043 -11.37596 -11.06264 -11.02065 -10.76585 -10.51180 -10.35856 -10.26651 -9.44960 -9.27699 -8.80411 -8.71376 -8.39329 -8.07694 -7.98182 -6.35536 -3.89533 0.79644 1.36378 1.68097 1.69835 2.48470 2.95412 3.11927 3.21864 3.26925 3.48725 3.61087 3.77367 3.85639 4.06382 4.17694 4.22534 4.49786 4.71476 4.78954 4.82111 4.83920 5.00497 5.04387 5.07875 5.13395 5.20024 5.45039 5.52213 5.58961 5.63252 5.65636 5.74949 5.84396 6.20849 6.36568 6.42743 6.61514 6.83810 6.89040 6.90568 7.12192 7.46038 7.48082 7.82703 7.92934 8.35668 8.89798 9.04596 9.26628 9.81526 10.58134 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.002968 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.434005 B = 9432.160616 C =11086.117759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.094 4.094 3 C 0.225 3.775 4 N -0.425 5.425 5 C -0.306 4.306 6 H 0.110 0.890 7 C 0.029 3.971 8 N -0.863 5.863 9 Si 0.932 3.068 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.474 3.526 14 O -0.580 6.580 15 C -0.051 4.051 16 C -0.115 4.115 17 C -0.087 4.087 18 C -0.207 4.207 19 C 0.121 3.879 20 O -0.307 6.307 21 C 0.156 3.844 22 C 0.171 3.829 23 N -0.361 5.361 24 O 0.085 5.915 25 C 0.178 3.822 26 C -0.062 4.062 27 N -0.468 5.468 28 C -0.129 4.129 29 H 0.197 0.803 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.271 0.729 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 -9.655 -18.792 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.096 4.096 3 C 0.102 3.898 4 N -0.141 5.141 5 C -0.433 4.433 6 H 0.128 0.872 7 C -0.175 4.175 8 N -0.501 5.501 9 Si 0.759 3.241 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.263 3.737 14 O -0.466 6.466 15 C -0.055 4.055 16 C -0.134 4.134 17 C -0.106 4.106 18 C -0.227 4.227 19 C 0.077 3.923 20 O -0.220 6.220 21 C 0.079 3.921 22 C -0.102 4.102 23 N -0.067 5.067 24 O 0.022 5.978 25 C -0.042 4.042 26 C -0.120 4.120 27 N -0.202 5.202 28 C -0.148 4.148 29 H 0.214 0.786 30 H 0.136 0.864 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.529 -9.911 -17.627 20.723 hybrid contribution -0.275 0.706 0.310 0.819 sum -4.803 -9.205 -17.317 20.191 Atomic orbital electron populations 1.24192 0.95313 1.06342 1.03029 1.22830 0.94061 0.95133 0.97557 1.18646 0.84594 1.01681 0.84894 1.43705 1.53673 1.06311 1.10383 1.19833 1.36307 0.91145 0.96059 0.87237 1.25372 0.95164 0.98653 0.98333 1.70015 1.27563 1.20365 1.32160 0.85822 0.78157 0.79735 0.80426 1.20173 1.20923 1.19309 1.17785 0.86276 0.81900 0.87751 1.90635 1.54673 1.75254 1.26023 1.20077 0.93649 0.97060 0.94687 1.21129 0.98468 0.96197 0.97583 1.20788 0.97247 0.98158 0.94372 1.21189 0.95121 1.03097 1.03249 1.18724 0.85952 0.96323 0.91344 1.86105 1.38391 1.59592 1.37885 1.20519 0.90012 0.94755 0.86861 1.25189 0.96915 0.92819 0.95246 1.74679 0.99143 1.22043 1.10819 1.85317 1.35831 1.43605 1.33029 1.28897 0.89983 0.89828 0.95494 1.20430 0.99575 1.00964 0.91044 1.71900 1.13289 1.22686 1.12350 1.21047 1.00297 1.00090 0.93394 0.78583 0.86443 0.91720 0.91807 0.85244 0.85560 0.85780 0.89120 0.88561 0.87927 0.88227 0.87473 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.98 19.05 29.55 0.56 -5.42 16 2 C -0.09 -2.22 8.70 -37.13 -0.32 -2.54 16 3 C 0.22 5.24 4.76 -6.83 -0.03 5.21 16 4 N -0.42 -11.03 2.59 -119.05 -0.31 -11.34 16 5 C -0.31 -8.44 9.46 -15.00 -0.14 -8.58 16 6 H 0.11 3.16 7.26 -52.49 -0.38 2.77 16 7 C 0.03 0.74 5.17 -17.45 -0.09 0.65 16 8 N -0.86 -22.28 8.38 55.50 0.46 -21.81 16 9 Si 0.93 20.43 29.58 -169.99 -5.03 15.40 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.47 12.08 7.17 -12.38 -0.09 11.99 16 14 O -0.58 -16.61 16.65 5.28 0.09 -16.52 16 15 C -0.05 -1.07 4.90 -104.99 -0.51 -1.58 16 16 C -0.11 -2.01 9.73 -39.15 -0.38 -2.39 16 17 C -0.09 -1.23 10.02 -39.67 -0.40 -1.62 16 18 C -0.21 -2.86 9.04 -39.34 -0.36 -3.22 16 19 C 0.12 2.02 6.68 -39.28 -0.26 1.76 16 20 O -0.31 -4.98 10.12 -19.48 -0.20 -5.18 16 21 C 0.16 1.91 5.36 36.01 0.19 2.10 16 22 C 0.17 2.26 7.85 -156.38 -1.23 1.04 16 23 N -0.36 -4.80 12.16 30.90 0.38 -4.42 16 24 O 0.09 0.93 11.31 18.09 0.20 1.13 16 25 C 0.18 1.63 8.51 -13.05 -0.11 1.51 16 26 C -0.06 -0.22 10.51 36.00 0.38 0.16 16 27 N -0.47 -5.77 11.55 -9.87 -0.11 -5.88 16 28 C -0.13 -2.55 7.50 -39.01 -0.29 -2.84 16 29 H 0.20 3.64 7.80 -54.09 -0.42 3.22 16 30 H 0.12 2.85 6.29 -51.93 -0.33 2.52 16 31 H 0.06 1.36 5.51 -51.93 -0.29 1.07 16 32 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.12 1.27 6.28 -52.49 -0.33 0.94 16 36 H 0.09 0.94 7.64 -51.93 -0.40 0.54 16 37 H 0.10 0.98 7.67 -51.93 -0.40 0.58 16 38 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 40 H 0.11 0.35 8.14 -51.92 -0.42 -0.07 16 41 H 0.15 3.13 4.70 -52.49 -0.25 2.88 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -34.65 360.07 -6.21 -40.85 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.04 Total: 6.12 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -3.08 Total: -3.78 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.42 Total: -43.45 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.10 Total: -20.57 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.65 -6.21 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281464529.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.350 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds