Wall clock time and date at job start Sat Apr 11 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00241 * 2 1 4 4 N 1.46491 * 109.47166 * 125.00238 * 3 2 1 5 5 C 1.46502 * 120.00485 * 275.00213 * 4 3 2 6 6 C 1.50706 * 109.47095 * 275.00381 * 5 4 3 7 7 H 1.08003 * 119.99674 * 359.97438 * 6 5 4 8 8 C 1.37867 * 119.99989 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00378 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00015 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47142 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47208 * 120.00144 * 10 8 6 13 13 H 1.48503 * 109.46803 * 239.99955 * 10 8 6 14 14 S 1.65602 * 119.99937 * 95.00194 * 4 3 2 15 15 O 1.42101 * 106.40227 * 336.46090 * 14 4 3 16 16 O 1.42102 * 106.40091 * 203.54214 * 14 4 3 17 17 C 1.76200 * 107.21894 * 90.00025 * 14 4 3 18 18 C 1.39874 * 126.03785 * 270.00076 * 17 14 4 19 19 N 1.30841 * 108.19623 * 179.73763 * 18 17 14 20 20 N 1.40082 * 108.20814 * 0.40999 * 19 18 17 21 21 C 1.46503 * 126.03719 * 179.85633 * 20 19 18 22 22 H 1.09007 * 110.98591 * 28.87866 * 21 20 19 23 23 C 1.55300 * 111.12279 * 264.68513 * 21 20 19 24 24 C 1.54377 * 102.25502 * 207.90513 * 23 21 20 25 25 O 1.43245 * 107.58529 * 21.35358 * 24 23 21 26 26 C 1.43641 * 109.97106 * 1.71442 * 25 24 23 27 27 C 1.34941 * 107.92557 * 359.58406 * 20 19 18 28 28 H 1.07999 * 120.00265 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99735 * 359.97438 * 1 2 3 30 30 H 1.07996 * 119.99424 * 180.02562 * 2 1 3 31 31 H 1.09010 * 109.46984 * 5.00342 * 3 2 1 32 32 H 1.08998 * 109.47296 * 245.00783 * 3 2 1 33 33 H 1.09004 * 109.46516 * 34.99368 * 5 4 3 34 34 H 1.08992 * 109.47525 * 154.99533 * 5 4 3 35 35 H 0.96992 * 120.00382 * 179.97438 * 9 8 6 36 36 H 1.07992 * 125.90189 * 359.97438 * 18 17 14 37 37 H 1.09006 * 110.85287 * 89.71138 * 23 21 20 38 38 H 1.09007 * 110.84948 * 326.09707 * 23 21 20 39 39 H 1.09000 * 109.83189 * 261.84669 * 24 23 21 40 40 H 1.09004 * 109.91014 * 140.91129 * 24 23 21 41 41 H 1.08997 * 110.30942 * 94.48681 * 26 25 24 42 42 H 1.08999 * 110.30828 * 216.65652 * 26 25 24 43 43 H 1.07997 * 126.12877 * 180.26690 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1313 5 6 2.5287 1.7619 2.4523 6 6 2.5993 3.2645 2.5450 7 1 2.9555 3.8412 1.7042 8 6 2.2093 3.9028 3.7031 9 7 1.7751 3.2005 4.7268 10 14 2.2975 5.7651 3.8183 11 1 2.8170 6.3160 2.5409 12 1 0.9406 6.3099 4.0774 13 1 3.2057 6.1499 4.9285 14 16 4.5714 0.8758 0.9171 15 8 4.5923 0.0261 -0.2217 16 8 5.0504 0.4761 2.1939 17 6 5.4769 2.3215 0.4760 18 6 5.6925 2.7930 -0.8231 19 7 6.4014 3.8902 -0.7471 20 7 6.6675 4.1467 0.6040 21 6 7.4354 5.2773 1.1317 22 1 7.3580 6.1428 0.4736 23 6 8.9192 4.8846 1.3678 24 6 9.3315 5.8347 2.5125 25 8 8.1344 6.2604 3.1740 26 6 6.9916 5.6305 2.5736 27 6 6.0867 3.1717 1.3341 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.4985 1.4370 2.5982 34 1 3.1615 1.3202 3.2219 35 1 1.5010 3.6495 5.5417 36 1 5.3326 2.3332 -1.7315 37 1 9.5166 5.0705 0.4751 38 1 9.0000 3.8432 1.6799 39 1 9.8560 6.6990 2.1050 40 1 9.9764 5.3093 3.2170 41 1 6.7275 4.7255 3.1206 42 1 6.1477 6.3200 2.5515 43 1 6.1048 3.0856 2.4105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292525145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:16 Heat of formation + Delta-G solvation = -10.518821 kcal Electronic energy + Delta-G solvation = -28816.780920 eV Core-core repulsion = 24799.023302 eV Total energy + Delta-G solvation = -4017.757618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37828 -39.41601 -36.62585 -36.28882 -35.16802 -33.93944 -33.22055 -31.89248 -30.88339 -30.17118 -28.61936 -27.49959 -24.91117 -23.78643 -22.57281 -22.31203 -21.49723 -20.39029 -19.65524 -18.69272 -17.64608 -16.95835 -16.78139 -16.46939 -15.97756 -15.63209 -15.36081 -14.99961 -14.78737 -14.50353 -14.46682 -14.21763 -13.88170 -13.58500 -13.04058 -12.88560 -12.70184 -12.48638 -12.13980 -12.00363 -11.89629 -11.70145 -11.58407 -11.46858 -11.29694 -11.21543 -11.20524 -10.87574 -10.77241 -10.53705 -10.40015 -10.10290 -9.88291 -9.82362 -9.48526 -9.04866 -9.02151 -8.54718 -8.07260 -6.16150 -4.22580 1.13261 1.73246 2.22289 2.48253 2.68896 3.16457 3.26235 3.27034 3.49213 3.84045 3.99879 4.17854 4.30261 4.46332 4.48447 4.50694 4.64821 4.80159 4.92989 5.13511 5.18614 5.27826 5.33937 5.35111 5.43929 5.50212 5.52491 5.56761 5.65683 5.69789 5.80988 6.16342 6.33285 6.49582 6.51086 6.53441 6.85198 7.00418 7.09956 7.35368 7.42827 7.52382 7.62467 7.81734 8.11659 8.83405 9.43328 10.91760 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009925 B = 0.005402 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.609531 B = 5182.240232 C = 7098.463580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C 0.158 3.842 4 N -0.978 5.978 5 C 0.244 3.756 6 C -0.539 4.539 7 H 0.061 0.939 8 C 0.067 3.933 9 N -0.886 5.886 10 Si 0.883 3.117 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.280 1.280 14 S 2.719 3.281 15 O -0.978 6.978 16 O -0.964 6.964 17 C -0.800 4.800 18 C 0.132 3.868 19 N -0.297 5.297 20 N -0.359 5.359 21 C 0.124 3.876 22 H 0.123 0.877 23 C -0.168 4.168 24 C 0.052 3.948 25 O -0.370 6.370 26 C 0.040 3.960 27 C 0.194 3.806 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.264 0.736 36 H 0.195 0.805 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.164 2.019 -7.908 12.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.180 4.180 3 C 0.031 3.969 4 N -0.816 5.816 5 C 0.122 3.878 6 C -0.579 4.579 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.524 5.524 10 Si 0.711 3.289 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.206 1.206 14 S 2.807 3.193 15 O -0.969 6.969 16 O -0.955 6.955 17 C -0.897 4.897 18 C -0.058 4.058 19 N -0.115 5.115 20 N -0.137 5.137 21 C 0.020 3.980 22 H 0.141 0.859 23 C -0.206 4.206 24 C -0.025 4.025 25 O -0.288 6.288 26 C -0.037 4.037 27 C 0.042 3.958 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.212 0.788 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 10.122 2.500 -8.050 13.172 hybrid contribution -0.420 1.112 0.314 1.229 sum 9.702 3.612 -7.736 12.924 Atomic orbital electron populations 1.23771 0.95826 1.01530 1.01506 1.23457 0.96308 0.99357 0.98858 1.20181 0.93113 0.95436 0.88132 1.57386 1.23910 1.82729 1.17625 1.19244 0.97261 0.94701 0.76580 1.21595 1.44587 0.92101 0.99595 0.92068 1.24913 0.95112 0.98013 0.95631 1.69932 1.43021 1.35372 1.04113 0.86682 0.78216 0.85969 0.78049 1.19869 1.20752 1.20635 1.01003 0.72488 0.73062 0.72787 1.93498 1.87059 1.63448 1.52852 1.93532 1.80247 1.80777 1.40897 1.31881 1.28636 1.28985 1.00184 1.23472 0.94033 0.91721 0.96605 1.77319 1.21559 1.18371 0.94271 1.48816 1.40367 1.19720 1.04844 1.23036 0.90400 0.87871 0.96659 0.85885 1.23589 0.94862 1.01780 1.00383 1.23131 0.88220 0.97587 0.93570 1.88514 1.14227 1.68561 1.57530 1.23807 0.90101 1.00172 0.89668 1.22444 0.88722 0.85630 0.98973 0.88925 0.88455 0.87439 0.89605 0.90665 0.93982 0.92869 0.92591 0.78808 0.88648 0.89355 0.90488 0.90441 0.90052 0.87707 0.79082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 14.32 29.01 0.42 -2.26 16 2 C -0.16 -2.55 9.84 -36.03 -0.35 -2.90 16 3 C 0.16 2.67 5.78 -5.20 -0.03 2.64 16 4 N -0.98 -19.39 2.75 -116.95 -0.32 -19.71 16 5 C 0.24 5.78 5.43 -5.19 -0.03 5.76 16 6 C -0.54 -13.47 9.38 -34.44 -0.32 -13.80 16 7 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 8 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 10 Si 0.88 19.95 29.54 -169.99 -5.02 14.93 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 S 2.72 52.20 5.79 -107.50 -0.62 51.58 16 15 O -0.98 -18.91 16.84 -57.17 -0.96 -19.88 16 16 O -0.96 -21.18 16.40 -57.17 -0.94 -22.12 16 17 C -0.80 -13.91 6.17 -40.01 -0.25 -14.16 16 18 C 0.13 2.07 11.82 -17.36 -0.21 1.86 16 19 N -0.30 -4.74 12.58 30.62 0.39 -4.36 16 20 N -0.36 -5.40 3.68 -52.69 -0.19 -5.59 16 21 C 0.12 1.47 4.26 -65.69 -0.28 1.19 16 22 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 23 C -0.17 -1.58 6.72 -24.79 -0.17 -1.75 16 24 C 0.05 0.47 7.79 37.88 0.30 0.76 16 25 O -0.37 -4.62 11.36 -35.23 -0.40 -5.02 16 26 C 0.04 0.51 7.15 38.18 0.27 0.78 16 27 C 0.19 3.22 10.33 -17.23 -0.18 3.04 16 28 H 0.09 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.10 1.34 7.84 -52.48 -0.41 0.93 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.09 1.46 7.76 -51.92 -0.40 1.05 16 32 H 0.08 1.11 7.61 -51.93 -0.40 0.72 16 33 H 0.04 1.05 8.11 -51.93 -0.42 0.63 16 34 H 0.05 1.37 6.91 -51.93 -0.36 1.02 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.20 2.46 8.06 -52.49 -0.42 2.04 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.07 6.21 -51.93 -0.32 0.75 16 42 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.19 3.00 6.75 -52.49 -0.35 2.64 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -31.90 378.34 -8.58 -40.48 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.02 Total: 4.87 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -0.93 Total: -17.19 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.61 Total: -53.35 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -2.30 Total: -47.01 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.62 Total: 51.58 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.90 -8.58 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292525145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.961 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds