Wall clock time and date at job start Sat Apr 11 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47239 * 2 1 4 4 C 1.50697 * 109.47596 * 120.00223 * 2 1 3 5 5 N 1.31130 * 126.55253 * 120.29367 * 4 2 1 6 6 C 1.34494 * 105.61328 * 180.12809 * 5 4 2 7 7 C 1.50703 * 126.28705 * 179.90726 * 6 5 4 8 8 H 1.09006 * 109.70942 * 9.10027 * 7 6 5 9 9 C 1.53713 * 109.74887 * 129.86632 * 7 6 5 10 10 O 1.42963 * 109.14914 * 172.16588 * 9 7 6 11 11 C 1.42961 * 114.16503 * 297.29015 * 10 9 7 12 12 C 1.53295 * 109.22501 * 62.57893 * 11 10 9 13 13 N 1.47147 * 108.38342 * 307.70013 * 12 11 10 14 14 C 1.34780 * 120.98019 * 230.50735 * 13 12 11 15 15 O 1.21282 * 120.00140 * 175.24341 * 14 13 12 16 16 C 1.50705 * 120.00109 * 355.23827 * 14 13 12 17 17 S 1.80997 * 109.46952 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99651 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00156 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00115 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00249 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99947 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46959 * 89.99526 * 22 20 18 24 24 H 1.48508 * 109.47143 * 330.00028 * 22 20 18 25 25 H 1.48491 * 109.47309 * 209.99969 * 22 20 18 26 26 N 1.29942 * 107.42754 * 359.64343 * 6 5 4 27 27 O 1.21298 * 110.25082 * 0.22268 * 26 6 5 28 28 H 1.09003 * 109.47363 * 59.99442 * 1 2 3 29 29 H 1.09000 * 109.47387 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47044 * 299.99786 * 1 2 3 31 31 H 1.09006 * 109.47044 * 240.00214 * 2 1 3 32 32 H 1.08999 * 109.46886 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.46993 * 300.00111 * 3 2 1 34 34 H 1.09003 * 109.46965 * 60.00674 * 3 2 1 35 35 H 1.09000 * 109.65499 * 52.19814 * 9 7 6 36 36 H 1.09002 * 109.44226 * 292.00503 * 9 7 6 37 37 H 1.09004 * 109.51296 * 302.65501 * 11 10 9 38 38 H 1.08994 * 109.51228 * 182.50552 * 11 10 9 39 39 H 1.08995 * 109.68568 * 187.97247 * 12 11 10 40 40 H 1.09008 * 109.67993 * 67.41916 * 12 11 10 41 41 H 1.08996 * 109.46516 * 59.99951 * 16 14 13 42 42 H 1.09001 * 109.47215 * 300.00191 * 16 14 13 43 43 H 0.97004 * 120.00033 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7937 -1.7777 1.2598 6 6 2.9816 -2.0525 2.5629 7 6 3.7895 -3.1931 3.1264 8 1 4.3420 -3.6835 2.3248 9 6 4.7685 -2.6625 4.1859 10 8 5.3960 -3.7680 4.8401 11 6 4.4929 -4.6133 5.5568 12 6 3.4995 -5.2406 4.5721 13 7 2.8927 -4.1626 3.7753 14 6 1.5550 -4.0694 3.6390 15 8 1.0696 -3.1262 3.0511 16 6 0.6624 -5.1372 4.2172 17 16 -1.0670 -4.7298 3.8722 18 6 -1.8632 -6.1027 4.6376 19 1 -1.2743 -6.8655 5.1253 20 6 -3.2474 -6.2034 4.6149 21 7 -3.8423 -7.2288 5.1871 22 14 -4.2661 -4.8838 3.7721 23 1 -4.4643 -5.2470 2.3458 24 1 -3.5574 -3.5815 3.8573 25 1 -5.5863 -4.7737 4.4429 26 7 2.3433 -1.1507 3.2468 27 8 1.7913 -0.3702 2.5001 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 4.2267 -2.0652 4.9193 36 1 5.5273 -2.0468 3.7028 37 1 3.9501 -4.0231 6.2952 38 1 5.0534 -5.4011 6.0600 39 1 2.7232 -5.7721 5.1224 40 1 4.0234 -5.9336 3.9136 41 1 0.8142 -5.1930 5.2951 42 1 0.9067 -6.0987 3.7657 43 1 -4.8096 -7.2993 5.1708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330760640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:32 Heat of formation + Delta-G solvation = 7.682708 kcal Electronic energy + Delta-G solvation = -28473.077926 eV Core-core repulsion = 24456.109586 eV Total energy + Delta-G solvation = -4016.968340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.30644 -40.53978 -38.32556 -36.32053 -35.67394 -34.79782 -32.57926 -32.49325 -30.59536 -29.71647 -27.65479 -27.44056 -25.68138 -25.27926 -24.23730 -23.11451 -22.41243 -20.87259 -19.11818 -18.02530 -17.71489 -17.36368 -16.86272 -16.60144 -16.11573 -15.90062 -15.49583 -15.38738 -15.10412 -15.01006 -14.48968 -13.99708 -13.86479 -13.59920 -13.51241 -13.08172 -12.84637 -12.55919 -12.46225 -12.32796 -12.18867 -11.90755 -11.71196 -11.67357 -11.47790 -11.31377 -11.25218 -11.18829 -11.06105 -10.80244 -10.68044 -10.48855 -10.18407 -9.89981 -9.05885 -8.91253 -8.74398 -8.56619 -6.98559 -6.34226 -4.06558 1.44252 2.19041 2.66305 2.75781 3.00526 3.08475 3.26063 3.27993 3.45126 3.49923 3.69622 4.06761 4.27554 4.34005 4.50909 4.64475 4.66250 4.72480 4.75376 4.81765 4.89115 5.02264 5.04906 5.08692 5.18862 5.25698 5.36029 5.43514 5.47786 5.50058 5.58839 5.61271 5.63887 5.69890 5.85755 5.88239 5.92350 6.08602 6.17877 6.23157 6.69668 7.18896 7.88688 8.21467 8.35651 8.43518 9.11813 10.75004 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009120 B = 0.004589 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.301348 B = 6099.439395 C = 8854.812597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.003 3.997 3 C -0.149 4.149 4 C 0.184 3.816 5 N -0.478 5.478 6 C 0.192 3.808 7 C 0.209 3.791 8 H 0.109 0.891 9 C 0.060 3.940 10 O -0.372 6.372 11 C 0.044 3.956 12 C 0.075 3.925 13 N -0.620 5.620 14 C 0.538 3.462 15 O -0.505 6.505 16 C -0.119 4.119 17 S -0.138 6.138 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.098 3.902 21 N -0.879 5.879 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.236 1.236 25 H -0.273 1.273 26 N -0.359 5.359 27 O 0.089 5.911 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.870 12.463 -6.528 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 C -0.207 4.207 4 C -0.036 4.036 5 N -0.213 5.213 6 C -0.080 4.080 7 C 0.103 3.897 8 H 0.127 0.873 9 C -0.019 4.019 10 O -0.290 6.290 11 C -0.034 4.034 12 C -0.047 4.047 13 N -0.359 5.359 14 C 0.327 3.673 15 O -0.377 6.377 16 C -0.269 4.269 17 S 0.088 5.912 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.111 4.111 21 N -0.515 5.515 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.160 1.160 25 H -0.198 1.198 26 N -0.066 5.066 27 O 0.028 5.972 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.393 13.364 -6.618 22.910 hybrid contribution -0.599 -0.978 0.356 1.201 sum 16.793 12.386 -6.263 21.786 Atomic orbital electron populations 1.21902 0.92080 1.03737 1.03240 1.19764 0.97180 0.95433 0.89362 1.21904 1.01580 0.93763 1.03458 1.28431 0.94008 0.92489 0.88716 1.71672 1.18166 1.12908 1.18553 1.24488 0.99062 0.98122 0.86331 1.19935 0.88592 0.85438 0.95706 0.87299 1.23020 0.95905 0.88779 0.94158 1.87984 1.33479 1.39546 1.67987 1.23085 0.92233 0.94626 0.93419 1.22528 0.97992 0.89654 0.94572 1.48241 1.05310 1.29524 1.52837 1.20386 0.81111 0.86763 0.79047 1.90668 1.72913 1.32563 1.41507 1.23292 0.99903 0.99784 1.03943 1.84817 0.95073 1.35476 1.75809 1.22293 0.94921 1.08276 1.41504 0.89372 1.24689 0.96827 0.95497 0.94121 1.69932 1.10405 1.28879 1.42309 0.86750 0.80796 0.83970 0.80428 1.19188 1.16038 1.19812 1.74448 1.10057 1.04937 1.17166 1.85188 1.53947 1.42755 1.15322 0.90778 0.91383 0.91435 0.87059 0.92051 0.90670 0.91495 0.91412 0.87304 0.92055 0.86957 0.87715 0.89925 0.88474 0.88336 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.18 37.16 0.34 -1.16 16 2 C 0.00 0.03 3.39 -91.77 -0.31 -0.28 16 3 C -0.15 -1.06 9.18 37.16 0.34 -0.72 16 4 C 0.18 2.64 7.00 -13.06 -0.09 2.55 16 5 N -0.48 -7.70 11.53 -9.87 -0.11 -7.82 16 6 C 0.19 3.13 4.32 -156.38 -0.68 2.45 16 7 C 0.21 2.85 3.64 -68.36 -0.25 2.60 16 8 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 9 C 0.06 0.68 6.27 37.53 0.24 0.92 16 10 O -0.37 -4.06 10.74 -35.23 -0.38 -4.44 16 11 C 0.04 0.40 6.98 37.31 0.26 0.67 16 12 C 0.08 0.80 6.52 -3.54 -0.02 0.77 16 13 N -0.62 -9.03 3.01 -165.80 -0.50 -9.53 16 14 C 0.54 10.10 7.64 -10.98 -0.08 10.02 16 15 O -0.50 -11.01 11.66 3.43 0.04 -10.97 16 16 C -0.12 -2.34 4.60 36.01 0.17 -2.17 16 17 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 18 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -26.44 13.97 55.49 0.78 -25.66 16 22 Si 0.86 21.82 27.74 -169.99 -4.72 17.10 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 N -0.36 -6.27 10.36 30.90 0.32 -5.95 16 27 O 0.09 1.44 11.30 15.97 0.18 1.62 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.85 7.98 -51.93 -0.41 0.43 16 36 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.06 6.07 -51.93 -0.32 0.75 16 40 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.10 1.77 7.46 -51.92 -0.39 1.38 16 42 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -36.14 367.77 -6.91 -43.04 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.19 Total: -1.11 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 0.13 Total: 3.69 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.48 Total: -48.96 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.16 Total: -13.79 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.14 -6.91 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330760640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.727 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds