Wall clock time and date at job start Sat Apr 11 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47239 * 2 1 4 4 C 1.50697 * 109.47596 * 120.00223 * 2 1 3 5 5 N 1.31130 * 126.55253 * 120.29367 * 4 2 1 6 6 C 1.34494 * 105.61328 * 180.12809 * 5 4 2 7 7 C 1.50703 * 126.28705 * 179.90726 * 6 5 4 8 8 H 1.09006 * 109.70942 * 9.10027 * 7 6 5 9 9 C 1.53713 * 109.74887 * 129.86632 * 7 6 5 10 10 O 1.42963 * 109.14914 * 172.16588 * 9 7 6 11 11 C 1.42961 * 114.16503 * 297.29015 * 10 9 7 12 12 C 1.53295 * 109.22501 * 62.57893 * 11 10 9 13 13 N 1.47147 * 108.38342 * 307.70013 * 12 11 10 14 14 C 1.34780 * 120.98019 * 230.50735 * 13 12 11 15 15 O 1.21282 * 120.00140 * 175.24341 * 14 13 12 16 16 C 1.50705 * 120.00109 * 355.23827 * 14 13 12 17 17 S 1.80997 * 109.46952 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99651 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00156 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00115 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00249 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99947 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46959 * 89.99526 * 22 20 18 24 24 H 1.48508 * 109.47143 * 330.00028 * 22 20 18 25 25 H 1.48491 * 109.47309 * 209.99969 * 22 20 18 26 26 N 1.29942 * 107.42754 * 359.64343 * 6 5 4 27 27 O 1.21298 * 110.25082 * 0.22268 * 26 6 5 28 28 H 1.09003 * 109.47363 * 59.99442 * 1 2 3 29 29 H 1.09000 * 109.47387 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47044 * 299.99786 * 1 2 3 31 31 H 1.09006 * 109.47044 * 240.00214 * 2 1 3 32 32 H 1.08999 * 109.46886 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.46993 * 300.00111 * 3 2 1 34 34 H 1.09003 * 109.46965 * 60.00674 * 3 2 1 35 35 H 1.09000 * 109.65499 * 52.19814 * 9 7 6 36 36 H 1.09002 * 109.44226 * 292.00503 * 9 7 6 37 37 H 1.09004 * 109.51296 * 302.65501 * 11 10 9 38 38 H 1.08994 * 109.51228 * 182.50552 * 11 10 9 39 39 H 1.08995 * 109.68568 * 187.97247 * 12 11 10 40 40 H 1.09008 * 109.67993 * 67.41916 * 12 11 10 41 41 H 1.08996 * 109.46516 * 59.99951 * 16 14 13 42 42 H 1.09001 * 109.47215 * 300.00191 * 16 14 13 43 43 H 0.97004 * 120.00033 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7937 -1.7777 1.2598 6 6 2.9816 -2.0525 2.5629 7 6 3.7895 -3.1931 3.1264 8 1 4.3420 -3.6835 2.3248 9 6 4.7685 -2.6625 4.1859 10 8 5.3960 -3.7680 4.8401 11 6 4.4929 -4.6133 5.5568 12 6 3.4995 -5.2406 4.5721 13 7 2.8927 -4.1626 3.7753 14 6 1.5550 -4.0694 3.6390 15 8 1.0696 -3.1262 3.0511 16 6 0.6624 -5.1372 4.2172 17 16 -1.0670 -4.7298 3.8722 18 6 -1.8632 -6.1027 4.6376 19 1 -1.2743 -6.8655 5.1253 20 6 -3.2474 -6.2034 4.6149 21 7 -3.8423 -7.2288 5.1871 22 14 -4.2661 -4.8838 3.7721 23 1 -4.4643 -5.2470 2.3458 24 1 -3.5574 -3.5815 3.8573 25 1 -5.5863 -4.7737 4.4429 26 7 2.3433 -1.1507 3.2468 27 8 1.7913 -0.3702 2.5001 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 4.2267 -2.0652 4.9193 36 1 5.5273 -2.0468 3.7028 37 1 3.9501 -4.0231 6.2952 38 1 5.0534 -5.4011 6.0600 39 1 2.7232 -5.7721 5.1224 40 1 4.0234 -5.9336 3.9136 41 1 0.8142 -5.1930 5.2951 42 1 0.9067 -6.0987 3.7657 43 1 -4.8096 -7.2993 5.1708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330760640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:31 Heat of formation + Delta-G solvation = -19.692838 kcal Electronic energy + Delta-G solvation = -28474.265019 eV Core-core repulsion = 24456.109586 eV Total energy + Delta-G solvation = -4018.155433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.48477 -41.71266 -39.47948 -37.25165 -36.75020 -35.95624 -34.72925 -33.60649 -31.67516 -31.11780 -28.78535 -28.11869 -27.89604 -26.29988 -25.28425 -24.14682 -23.46283 -21.93050 -20.47105 -19.62081 -19.11788 -18.58408 -18.09864 -17.68055 -17.19535 -17.09617 -17.03523 -16.50893 -16.36426 -16.25100 -15.75699 -15.24396 -15.12761 -15.03597 -14.85766 -14.25288 -14.05342 -13.78279 -13.59130 -13.43409 -13.24262 -13.09279 -13.08184 -12.80006 -12.76615 -12.70045 -12.53600 -12.30324 -12.11397 -12.08957 -11.93673 -11.87494 -11.44060 -11.38721 -11.23079 -10.60915 -10.23644 -9.86620 -9.07795 -8.57158 -6.28793 0.30053 0.82121 1.12589 1.24924 1.30428 1.40489 1.48499 1.88798 1.98203 2.18744 2.29189 2.58112 2.79516 2.81157 3.01721 3.36908 3.48763 3.71383 3.82220 3.90182 3.97058 4.00213 4.02233 4.09411 4.17500 4.26984 4.34879 4.42748 4.55875 4.70969 4.73034 4.75345 4.79889 4.84633 4.89878 5.02783 5.08934 5.10786 5.29109 5.33076 5.65225 5.85889 5.93836 6.05664 6.81783 6.88053 7.26806 8.55309 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009120 B = 0.004589 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.301348 B = 6099.439395 C = 8854.812597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.003 3.997 3 C -0.142 4.142 4 C 0.189 3.811 5 N -0.503 5.503 6 C 0.189 3.811 7 C 0.204 3.796 8 H 0.122 0.878 9 C 0.071 3.929 10 O -0.373 6.373 11 C 0.045 3.955 12 C 0.067 3.933 13 N -0.611 5.611 14 C 0.535 3.465 15 O -0.541 6.541 16 C -0.102 4.102 17 S -0.173 6.173 18 C -0.529 4.529 19 H 0.064 0.936 20 C 0.050 3.950 21 N -0.914 5.914 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.242 1.242 25 H -0.256 1.256 26 N -0.385 5.385 27 O 0.073 5.927 28 H 0.107 0.893 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.130 0.870 37 H 0.055 0.945 38 H 0.147 0.853 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.411 13.261 -7.404 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 C -0.200 4.200 4 C -0.031 4.031 5 N -0.237 5.237 6 C -0.084 4.084 7 C 0.099 3.901 8 H 0.140 0.860 9 C -0.008 4.008 10 O -0.290 6.290 11 C -0.032 4.032 12 C -0.054 4.054 13 N -0.348 5.348 14 C 0.323 3.677 15 O -0.417 6.417 16 C -0.253 4.253 17 S 0.054 5.946 18 C -0.677 4.677 19 H 0.082 0.918 20 C -0.156 4.156 21 N -0.552 5.552 22 Si 0.734 3.266 23 H -0.187 1.187 24 H -0.166 1.166 25 H -0.180 1.180 26 N -0.096 5.096 27 O 0.015 5.985 28 H 0.126 0.874 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.073 0.927 38 H 0.165 0.835 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.970 14.152 -7.485 24.823 hybrid contribution -0.933 -1.285 0.632 1.709 sum 18.037 12.868 -6.853 23.192 Atomic orbital electron populations 1.21898 0.92099 1.02127 1.04494 1.20102 0.97017 0.96933 0.87704 1.21893 1.01703 0.91729 1.04639 1.29391 0.92631 0.91945 0.89164 1.71680 1.19453 1.13893 1.18720 1.24930 0.98688 0.98319 0.86456 1.20272 0.88346 0.84717 0.96742 0.85994 1.22948 0.95682 0.88908 0.93229 1.87999 1.33710 1.39417 1.67908 1.23255 0.92137 0.95110 0.92709 1.22893 0.98479 0.89012 0.94993 1.48245 1.04051 1.30274 1.52256 1.20170 0.82491 0.86022 0.79030 1.90664 1.74032 1.33703 1.43296 1.23231 0.95923 1.00917 1.05213 1.84766 0.99744 1.34392 1.75699 1.22420 0.95288 1.08711 1.41246 0.91757 1.25491 0.97963 0.97387 0.94733 1.70002 1.11155 1.30470 1.43534 0.85910 0.79810 0.81163 0.79731 1.18650 1.16596 1.18037 1.74405 1.11201 1.05826 1.18144 1.85136 1.54336 1.42952 1.16088 0.87395 0.94329 0.92311 0.85808 0.91817 0.87832 0.91941 0.92808 0.85257 0.92672 0.83533 0.87279 0.87673 0.86920 0.86845 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.18 71.98 0.66 -2.16 16 2 C 0.00 0.05 3.39 -11.54 -0.04 0.01 16 3 C -0.14 -1.74 9.18 71.98 0.66 -1.08 16 4 C 0.19 5.41 7.00 88.38 0.62 6.03 16 5 N -0.50 -16.15 11.53 -303.22 -3.49 -19.64 16 6 C 0.19 6.10 4.32 138.46 0.60 6.70 16 7 C 0.20 5.32 3.64 44.36 0.16 5.48 16 8 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 9 C 0.07 1.49 6.27 72.22 0.45 1.94 16 10 O -0.37 -7.09 10.74 -148.98 -1.60 -8.69 16 11 C 0.04 0.70 6.98 72.08 0.50 1.20 16 12 C 0.07 1.25 6.52 86.35 0.56 1.82 16 13 N -0.61 -16.95 3.01 -796.87 -2.40 -19.35 16 14 C 0.53 19.82 7.64 87.66 0.67 20.49 16 15 O -0.54 -23.87 11.66 -1.01 -0.01 -23.88 16 16 C -0.10 -3.97 4.60 71.24 0.33 -3.64 16 17 S -0.17 -8.86 18.55 -56.49 -1.05 -9.91 16 18 C -0.53 -30.85 10.04 67.96 0.68 -30.17 16 19 H 0.06 3.93 8.03 -2.91 -0.02 3.91 16 20 C 0.05 2.94 5.50 84.86 0.47 3.41 16 21 N -0.91 -55.49 13.97 21.65 0.30 -55.18 16 22 Si 0.91 45.28 27.74 68.60 1.90 47.18 16 23 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.24 -12.14 6.74 99.48 0.67 -11.47 16 25 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 26 N -0.39 -13.66 10.36 -60.34 -0.63 -14.29 16 27 O 0.07 2.41 11.30 76.83 0.87 3.28 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 1.30 7.98 -2.39 -0.02 1.28 16 36 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.11 1.95 6.07 -2.39 -0.01 1.94 16 40 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.11 4.01 7.46 -2.40 -0.02 3.99 16 42 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 43 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -79.90 367.77 1.20 -78.69 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.99 Total: 11.75 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.33 Total: 10.03 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -6.22 Total: -108.46 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.74 Total: -29.29 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Total: -79.90 1.20 -78.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330760640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.999 kcal (2) G-P(sol) polarization free energy of solvation -79.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds