Wall clock time and date at job start Sat Apr 11 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47234 * 2 1 4 4 C 1.50704 * 109.47119 * 239.99925 * 2 1 3 5 5 H 1.07998 * 119.99755 * 241.34537 * 4 2 1 6 6 C 1.37877 * 120.00137 * 61.34740 * 4 2 1 7 7 N 1.31508 * 120.00063 * 193.97699 * 6 4 2 8 8 Si 1.86797 * 119.99687 * 13.97642 * 6 4 2 9 9 H 1.48501 * 109.47077 * 84.54979 * 8 6 4 10 10 H 1.48498 * 109.47260 * 204.54889 * 8 6 4 11 11 H 1.48499 * 109.47484 * 324.54989 * 8 6 4 12 12 C 1.52997 * 109.47127 * 120.00052 * 2 1 3 13 13 N 1.46504 * 109.47075 * 299.99889 * 12 2 1 14 14 C 1.34774 * 120.00180 * 179.97438 * 13 12 2 15 15 O 1.21285 * 119.99746 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00145 * 179.97438 * 14 13 12 17 17 N 1.46504 * 109.47349 * 179.97438 * 16 14 13 18 18 S 1.65597 * 120.00106 * 164.99845 * 17 16 14 19 19 O 1.42105 * 106.40424 * 311.46744 * 18 17 16 20 20 O 1.42103 * 106.40371 * 178.54377 * 18 17 16 21 21 C 1.76200 * 107.21628 * 65.00720 * 18 17 16 22 22 C 1.38679 * 120.41822 * 270.25404 * 21 18 17 23 23 C 1.38625 * 118.41823 * 180.24424 * 22 21 18 24 24 C 1.38228 * 119.16558 * 359.74652 * 23 22 21 25 25 N 1.31852 * 120.76129 * 0.02562 * 24 23 22 26 26 C 1.31884 * 121.72607 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47180 * 309.36861 * 1 2 3 28 28 H 1.08998 * 109.47144 * 69.36727 * 1 2 3 29 29 H 1.09004 * 109.47503 * 189.36644 * 1 2 3 30 30 H 1.08996 * 109.46986 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47201 * 300.00127 * 3 2 1 32 32 H 1.09000 * 109.47143 * 59.99627 * 3 2 1 33 33 H 0.96996 * 120.00166 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47476 * 180.02562 * 12 2 1 35 35 H 1.09001 * 109.47439 * 59.99827 * 12 2 1 36 36 H 0.97002 * 119.99994 * 359.97438 * 13 12 2 37 37 H 1.09004 * 109.47183 * 60.00492 * 16 14 13 38 38 H 1.08991 * 109.47659 * 300.00561 * 16 14 13 39 39 H 0.97004 * 119.99919 * 345.00926 * 17 16 14 40 40 H 1.07996 * 120.78760 * 359.96382 * 22 21 18 41 41 H 1.08005 * 120.41909 * 179.72926 * 23 22 21 42 42 H 1.07995 * 119.61702 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.62042 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6010 -1.1315 6 6 1.7223 -0.2234 -2.4826 7 7 1.9158 -0.9726 -3.5459 8 14 1.0276 1.5005 -2.6684 9 1 2.1417 2.4816 -2.7084 10 1 0.2470 1.5865 -3.9287 11 1 0.1418 1.8043 -1.5159 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5741 -1.4774 3.7808 16 6 1.3750 0.2194 4.8999 17 7 1.8622 -0.4719 6.0962 18 16 1.7887 0.2754 7.5721 19 8 2.3319 1.5760 7.3909 20 8 2.2975 -0.6545 8.5185 21 6 0.0843 0.4976 7.9599 22 6 -0.5798 1.6510 7.5703 23 6 -1.9192 1.7850 7.9016 24 6 -2.5452 0.7694 8.5998 25 7 -1.8833 -0.3158 8.9500 26 6 -0.6085 -0.4768 8.6526 27 1 -0.3633 0.6518 0.7945 28 1 -0.3633 0.3621 -0.9617 29 1 -0.3634 -1.0140 0.1673 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6973 -0.6302 -4.4268 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2493 36 1 0.9943 0.7583 2.3564 37 1 0.2849 0.2202 4.8999 38 1 1.7389 1.2468 4.9000 39 1 2.2279 -1.3674 6.0236 40 1 -0.0646 2.4284 7.0257 41 1 -2.4666 2.6718 7.6182 42 1 -3.5886 0.8659 8.8613 43 1 -0.0993 -1.3794 8.9567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412417197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:54 Heat of formation + Delta-G solvation = -85.962031 kcal Electronic energy + Delta-G solvation = -27319.542511 eV Core-core repulsion = 23298.513430 eV Total energy + Delta-G solvation = -4021.029081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11848 -40.90825 -38.53931 -38.40793 -37.06459 -35.76848 -35.01999 -33.72819 -33.44428 -32.51154 -29.09416 -27.96879 -27.16945 -26.25241 -25.09409 -24.76092 -21.75892 -20.95300 -20.77814 -19.34710 -18.98401 -18.11117 -17.98842 -17.69288 -17.54034 -17.30386 -16.79923 -16.67373 -16.24193 -15.56054 -15.33463 -15.22883 -15.06015 -14.80562 -14.70296 -14.28019 -14.18968 -14.01191 -13.91749 -13.72241 -13.70775 -13.32780 -13.26101 -13.21664 -12.87810 -12.37805 -12.30575 -12.14035 -11.92690 -11.73009 -11.33249 -11.14431 -10.98317 -10.79252 -10.60197 -10.54077 -10.48283 -10.35878 -10.00658 -8.28723 -6.30751 -0.82602 -0.43035 0.12930 1.38166 1.40465 1.53519 1.60508 1.78941 2.30271 2.36806 2.48513 2.71269 3.08028 3.16187 3.39008 3.61419 3.80116 3.81563 4.01448 4.10298 4.23992 4.29905 4.32038 4.38564 4.45163 4.55669 4.64683 4.78165 4.80309 4.87178 4.90143 4.96085 4.98329 5.10914 5.20559 5.43981 5.51595 5.56783 5.74368 5.83713 5.85293 6.31618 6.61340 6.72598 6.74805 7.26281 7.34523 8.88686 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018285 B = 0.002505 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.910554 B =11174.809045 C =11852.580031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.027 3.973 3 C -0.150 4.150 4 C -0.519 4.519 5 H 0.025 0.975 6 C 0.014 3.986 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.283 1.283 10 H -0.319 1.319 11 H -0.197 1.197 12 C 0.157 3.843 13 N -0.706 5.706 14 C 0.504 3.496 15 O -0.582 6.582 16 C 0.096 3.904 17 N -1.106 6.106 18 S 2.730 3.270 19 O -0.971 6.971 20 O -0.981 6.981 21 C -0.736 4.736 22 C 0.016 3.984 23 C -0.183 4.183 24 C 0.143 3.857 25 N -0.524 5.524 26 C 0.185 3.815 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.264 0.736 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.417 0.583 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.428 0.572 40 H 0.177 0.823 41 H 0.183 0.817 42 H 0.193 0.807 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.851 11.414 25.067 29.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.026 3.974 3 C -0.206 4.206 4 C -0.557 4.557 5 H 0.043 0.957 6 C -0.184 4.184 7 N -0.589 5.589 8 Si 0.775 3.225 9 H -0.211 1.211 10 H -0.248 1.248 11 H -0.120 1.120 12 C 0.032 3.968 13 N -0.359 5.359 14 C 0.290 3.710 15 O -0.462 6.462 16 C -0.033 4.033 17 N -0.869 5.869 18 S 2.820 3.180 19 O -0.961 6.961 20 O -0.972 6.972 21 C -0.827 4.827 22 C -0.011 4.011 23 C -0.203 4.203 24 C -0.013 4.013 25 N -0.234 5.234 26 C 0.026 3.974 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.255 0.745 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.266 0.734 40 H 0.195 0.805 41 H 0.201 0.799 42 H 0.210 0.790 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.181 10.465 25.944 30.127 hybrid contribution -0.012 0.360 -1.644 1.683 sum -11.193 10.825 24.300 28.861 Atomic orbital electron populations 1.22224 0.95783 1.00766 1.01106 1.18665 0.93983 0.93145 0.91642 1.22319 1.00982 0.96723 1.00593 1.21077 1.32846 1.11049 0.90769 0.95688 1.25913 0.95453 1.01783 0.95203 1.70121 1.50834 1.38452 0.99462 0.86328 0.79421 0.79639 0.77097 1.21091 1.24842 1.11999 1.21040 0.97424 0.95068 0.83233 1.45952 1.52963 1.32166 1.04797 1.20990 0.80018 0.84469 0.85563 1.90697 1.39945 1.28517 1.87003 1.21363 1.02358 0.97783 0.81765 1.55208 1.78757 1.31441 1.21535 1.00722 0.73404 0.72488 0.71417 1.93573 1.76518 1.40323 1.85689 1.93577 1.78848 1.64408 1.60342 1.31727 1.27487 1.05825 1.17620 1.21850 0.94883 0.93631 0.90715 1.22719 0.95367 1.02188 1.00012 1.23838 1.01468 0.87294 0.88661 1.67901 1.09081 1.25121 1.21298 1.22777 0.90048 0.96639 0.87904 0.90811 0.93828 0.94124 0.93661 0.94797 0.90024 0.92752 0.93944 0.93963 0.74472 0.84860 0.84441 0.73409 0.80544 0.79941 0.79011 0.81001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 7.53 71.98 0.54 -4.25 16 2 C 0.03 1.05 0.50 -52.93 -0.03 1.02 16 3 C -0.15 -5.05 7.52 71.98 0.54 -4.51 16 4 C -0.52 -27.67 8.62 25.60 0.22 -27.45 16 5 H 0.02 1.53 7.99 -2.91 -0.02 1.51 16 6 C 0.01 0.75 5.32 84.66 0.45 1.20 16 7 N -0.95 -58.11 13.96 21.45 0.30 -57.81 16 8 Si 0.95 40.96 22.79 68.60 1.56 42.53 16 9 H -0.28 -12.11 7.10 99.48 0.71 -11.40 16 10 H -0.32 -14.43 7.11 99.48 0.71 -13.73 16 11 H -0.20 -6.88 4.65 99.48 0.46 -6.42 16 12 C 0.16 5.64 4.49 86.38 0.39 6.03 16 13 N -0.71 -17.34 5.00 -463.06 -2.32 -19.66 16 14 C 0.50 12.38 7.90 87.66 0.69 13.07 16 15 O -0.58 -19.95 15.73 -3.04 -0.05 -19.99 16 16 C 0.10 1.33 6.70 85.63 0.57 1.91 16 17 N -1.11 -18.49 5.93 -190.79 -1.13 -19.62 16 18 S 2.73 46.66 5.75 -56.49 -0.32 46.33 16 19 O -0.97 -20.06 16.84 -128.00 -2.16 -22.21 16 20 O -0.98 -23.21 17.31 -128.00 -2.22 -25.42 16 21 C -0.74 -10.02 5.96 22.36 0.13 -9.89 16 22 C 0.02 0.14 9.65 22.47 0.22 0.36 16 23 C -0.18 -1.12 10.11 22.36 0.23 -0.89 16 24 C 0.14 1.34 11.18 84.69 0.95 2.29 16 25 N -0.52 -8.43 10.36 -195.84 -2.03 -10.46 16 26 C 0.19 2.97 10.69 84.67 0.90 3.87 16 27 H 0.07 1.75 7.13 -2.39 -0.02 1.73 16 28 H 0.04 1.60 4.30 -2.39 -0.01 1.59 16 29 H 0.04 1.42 8.12 -2.39 -0.02 1.40 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 1.22 2.25 -2.39 -0.01 1.21 16 32 H 0.08 1.93 6.86 -2.39 -0.02 1.91 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.42 7.03 6.26 -92.71 -0.58 6.45 16 37 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.14 1.22 7.75 -2.39 -0.02 1.21 16 39 H 0.43 8.26 7.70 -96.74 -0.75 7.52 16 40 H 0.18 0.71 7.71 -2.91 -0.02 0.69 16 41 H 0.18 -0.20 8.06 -2.91 -0.02 -0.23 16 42 H 0.19 0.52 8.06 -2.91 -0.02 0.50 16 43 H 0.17 2.53 7.63 -2.91 -0.02 2.50 16 Total: -1.00 -83.89 359.41 -3.05 -86.93 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -0.50 Total: 16.64 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 5.81 Total: -17.25 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -5.18 Total: -107.55 kcal Atomic # 8 Polarization: -63.21 SS G_CDS: -4.42 Total: -67.63 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.56 Total: 42.53 kcal Atomic # 16 Polarization: 46.66 SS G_CDS: -0.32 Total: 46.33 kcal Total: -83.89 -3.05 -86.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412417197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.972 kcal (2) G-P(sol) polarization free energy of solvation -83.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds