Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 H 1.08999 * 109.47454 * 302.85852 * 3 2 1 5 5 O 1.42895 * 109.47687 * 62.86068 * 3 2 1 6 6 C 1.35929 * 117.00004 * 265.73827 * 5 3 2 7 7 C 1.38711 * 120.05630 * 357.09987 * 6 5 3 8 8 C 1.38152 * 119.95411 * 179.74531 * 7 6 5 9 9 C 1.38281 * 120.07638 * 0.53141 * 8 7 6 10 10 C 1.38246 * 120.12106 * 359.72060 * 9 8 7 11 11 C 1.38262 * 120.03957 * 0.02562 * 10 9 8 12 12 Cl 1.73604 * 120.03761 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46874 * 182.85926 * 3 2 1 14 14 O 1.21293 * 120.00394 * 255.26647 * 13 3 2 15 15 N 1.34777 * 120.00035 * 75.26593 * 13 3 2 16 16 C 1.37097 * 119.99828 * 5.77747 * 15 13 3 17 17 H 1.08000 * 120.00134 * 327.54015 * 16 15 13 18 18 C 1.38949 * 120.00038 * 147.54677 * 16 15 13 19 19 N 1.31411 * 119.99929 * 338.05802 * 18 16 15 20 20 Si 1.86804 * 120.00212 * 158.06295 * 18 16 15 21 21 H 1.48498 * 109.46839 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47200 * 119.99535 * 20 18 16 23 23 H 1.48494 * 109.47171 * 239.99529 * 20 18 16 24 24 C 1.46501 * 119.99987 * 185.77127 * 15 13 3 25 25 C 1.53003 * 109.47090 * 83.81874 * 24 15 13 26 26 O 1.42902 * 109.47111 * 64.99899 * 25 24 15 27 27 C 1.42895 * 114.00194 * 180.02562 * 26 25 24 28 28 H 1.09005 * 109.46925 * 299.99874 * 1 2 3 29 29 H 1.08995 * 109.47430 * 60.00193 * 1 2 3 30 30 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46765 * 119.99891 * 2 1 3 32 32 H 1.08997 * 109.46996 * 239.99779 * 2 1 3 33 33 H 1.07998 * 120.02189 * 359.97438 * 7 6 5 34 34 H 1.08003 * 119.96597 * 180.25136 * 8 7 6 35 35 H 1.08006 * 119.94033 * 179.74622 * 9 8 7 36 36 H 1.07997 * 119.98305 * 180.02562 * 10 9 8 37 37 H 0.96999 * 120.00131 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.46948 * 203.81579 * 24 15 13 39 39 H 1.09000 * 109.47225 * 323.81787 * 24 15 13 40 40 H 1.08993 * 109.47105 * 184.99797 * 25 24 15 41 41 H 1.09004 * 109.46656 * 304.99876 * 25 24 15 42 42 H 1.09004 * 109.47027 * 299.99785 * 27 26 25 43 43 H 1.09005 * 109.47436 * 59.99251 * 27 26 25 44 44 H 1.08992 * 109.47716 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6354 1.9709 -0.8632 5 8 1.6194 2.0965 1.1989 6 6 0.4655 2.8126 1.1390 7 6 -0.2151 2.9340 -0.0635 8 6 -1.3904 3.6579 -0.1209 9 6 -1.8831 4.2707 1.0166 10 6 -1.2045 4.1562 2.2156 11 6 -0.0306 3.4285 2.2797 12 17 0.8212 3.2841 3.7856 13 6 3.5453 1.4431 -0.0709 14 8 4.1990 1.6936 0.9196 15 7 4.1652 1.1653 -1.2349 16 6 3.4303 0.9990 -2.3803 17 1 2.4384 0.5750 -2.3286 18 6 3.9617 1.3759 -3.6076 19 7 4.9356 2.2567 -3.6593 20 14 3.2917 0.6307 -5.1840 21 1 2.2064 -0.3282 -4.8559 22 1 2.7543 1.7092 -6.0520 23 1 4.3821 -0.0816 -5.8973 24 6 5.6244 1.0413 -1.2763 25 6 6.0277 -0.3756 -0.8629 26 8 5.5413 -1.3101 -1.8284 27 6 5.8650 -2.6706 -1.5349 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 0.1714 2.4598 -0.9535 34 1 -1.9227 3.7491 -1.0562 35 1 -2.7999 4.8395 0.9684 36 1 -1.5915 4.6353 3.1027 37 1 5.3063 2.5201 -4.5161 38 1 5.9772 1.2387 -2.2886 39 1 6.0699 1.7608 -0.5894 40 1 7.1142 -0.4426 -0.8078 41 1 5.5994 -0.6051 0.1129 42 1 6.9481 -2.7856 -1.4934 43 1 5.4331 -2.9476 -0.5731 44 1 5.4603 -3.3167 -2.3139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413870876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = -84.398902 kcal Electronic energy + Delta-G solvation = -28872.925355 eV Core-core repulsion = 24817.627599 eV Total energy + Delta-G solvation = -4055.297756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.35579 -38.75132 -37.39232 -36.70063 -36.09987 -34.75004 -33.25383 -31.64487 -30.65984 -29.91544 -29.41466 -26.82799 -25.79531 -24.70909 -23.15260 -22.33641 -22.15051 -20.78021 -19.11640 -18.34074 -17.46711 -16.25614 -15.94628 -15.62827 -15.45316 -15.42436 -15.32785 -14.63403 -14.46767 -14.26894 -14.05561 -13.86046 -13.64113 -13.40820 -13.12130 -12.73977 -12.14929 -12.07560 -11.98271 -11.80293 -11.73558 -11.41563 -11.31901 -11.24808 -11.22255 -11.11241 -11.03473 -10.77159 -10.60831 -10.46752 -10.37133 -10.06926 -10.01464 -9.22025 -9.01388 -8.76523 -8.45666 -7.88982 -7.61587 -6.41911 -4.06376 1.24531 1.46103 2.41947 3.08645 3.22114 3.23978 3.32062 3.72071 3.75647 4.09763 4.46408 4.69460 4.87286 4.96611 5.03204 5.13501 5.30565 5.32025 5.39120 5.50890 5.62468 5.64225 5.69786 5.77044 5.81898 5.92798 5.96226 6.03206 6.05004 6.20153 6.21913 6.27070 6.30115 6.31951 6.38551 6.51329 6.59400 6.68087 6.76209 7.24784 7.38385 7.65531 7.72244 7.92241 8.28937 9.02661 9.41660 9.82344 10.59827 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012776 B = 0.004102 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.134669 B = 6824.469165 C = 7846.021494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.136 4.136 3 C 0.079 3.921 4 H 0.102 0.898 5 O -0.273 6.273 6 C 0.156 3.844 7 C -0.202 4.202 8 C -0.074 4.074 9 C -0.160 4.160 10 C -0.076 4.076 11 C -0.078 4.078 12 Cl -0.061 7.061 13 C 0.469 3.531 14 O -0.586 6.586 15 N -0.422 5.422 16 C -0.335 4.335 17 H 0.092 0.908 18 C 0.051 3.949 19 N -0.857 5.857 20 Si 0.914 3.086 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.278 1.278 24 C 0.112 3.888 25 C 0.052 3.948 26 O -0.365 6.365 27 C 0.031 3.969 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.270 0.730 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.030 0.970 43 H 0.032 0.968 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -1.840 4.192 10.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.174 4.174 3 C 0.020 3.980 4 H 0.120 0.880 5 O -0.184 6.184 6 C 0.108 3.892 7 C -0.221 4.221 8 C -0.092 4.092 9 C -0.178 4.178 10 C -0.095 4.095 11 C -0.105 4.105 12 Cl -0.032 7.032 13 C 0.256 3.744 14 O -0.471 6.471 15 N -0.141 5.141 16 C -0.462 4.462 17 H 0.109 0.891 18 C -0.155 4.155 19 N -0.494 5.494 20 Si 0.741 3.259 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.204 1.204 24 C -0.011 4.011 25 C -0.026 4.026 26 O -0.283 6.283 27 C -0.067 4.067 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.859 -1.619 4.659 10.139 hybrid contribution -0.011 -0.607 -0.752 0.967 sum -8.870 -2.226 3.906 9.944 Atomic orbital electron populations 1.21925 0.95572 1.01739 1.01775 1.21930 0.96034 0.95287 1.04180 1.22319 0.95363 0.93805 0.86522 0.88008 1.86286 1.35172 1.60967 1.35958 1.18846 0.86858 0.91035 0.92454 1.21487 0.97993 1.05141 0.97452 1.21016 0.94795 0.94902 0.98527 1.20920 1.01328 1.03237 0.92331 1.20833 0.92602 0.97162 0.98911 1.20183 0.97120 1.06346 0.86841 1.98359 1.77267 1.97126 1.30492 1.19801 0.87922 0.81732 0.84964 1.90569 1.66571 1.53330 1.36602 1.43234 1.05133 1.59525 1.06193 1.19428 1.01320 1.41518 0.83923 0.89066 1.25213 0.96710 0.94113 0.99501 1.69889 1.26524 1.26336 1.26631 0.86090 0.79114 0.79105 0.81603 1.19168 1.21021 1.20373 1.21573 0.82340 0.91443 1.05759 1.23049 0.96345 0.91658 0.91557 1.88121 1.77955 1.14254 1.47974 1.22647 0.98537 0.85179 1.00306 0.92774 0.92335 0.92551 0.91225 0.88596 0.83672 0.85386 0.85447 0.84850 0.91978 0.85917 0.91121 0.94124 0.94167 0.95137 0.94972 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.46 37.16 0.31 -1.88 16 2 C -0.14 -2.39 5.38 -26.73 -0.14 -2.53 16 3 C 0.08 1.60 1.76 -27.88 -0.05 1.55 16 4 H 0.10 2.02 4.53 -51.93 -0.24 1.78 16 5 O -0.27 -5.58 8.67 -38.95 -0.34 -5.91 16 6 C 0.16 2.70 5.24 -39.20 -0.21 2.50 16 7 C -0.20 -3.03 7.20 -39.44 -0.28 -3.31 16 8 C -0.07 -0.90 10.04 -39.60 -0.40 -1.30 16 9 C -0.16 -1.80 10.04 -39.56 -0.40 -2.20 16 10 C -0.08 -0.96 9.83 -39.57 -0.39 -1.35 16 11 C -0.08 -1.23 6.33 -39.36 -0.25 -1.47 16 12 Cl -0.06 -0.99 28.51 -51.86 -1.48 -2.47 16 13 C 0.47 11.41 6.88 -10.99 -0.08 11.33 16 14 O -0.59 -15.92 16.22 -13.88 -0.23 -16.14 16 15 N -0.42 -10.27 2.52 -114.81 -0.29 -10.56 16 16 C -0.33 -8.03 8.02 -14.93 -0.12 -8.15 16 17 H 0.09 2.06 5.47 -52.49 -0.29 1.77 16 18 C 0.05 1.23 4.94 -17.47 -0.09 1.14 16 19 N -0.86 -21.85 11.22 55.50 0.62 -21.23 16 20 Si 0.91 19.05 29.61 -169.99 -5.03 14.02 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 C 0.11 2.64 5.32 -4.04 -0.02 2.62 16 25 C 0.05 1.06 6.23 37.16 0.23 1.29 16 26 O -0.36 -7.50 10.47 -35.23 -0.37 -7.87 16 27 C 0.03 0.47 11.01 101.05 1.11 1.58 16 28 H 0.05 0.80 6.34 -51.93 -0.33 0.47 16 29 H 0.06 0.78 6.75 -51.93 -0.35 0.43 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.10 1.74 6.36 -51.93 -0.33 1.41 16 33 H 0.15 2.18 4.66 -52.49 -0.24 1.93 16 34 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 35 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 38 H 0.12 3.07 5.24 -51.93 -0.27 2.80 16 39 H 0.07 1.70 7.54 -51.93 -0.39 1.30 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -29.74 371.58 -8.07 -37.81 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.80 Total: 6.94 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.76 Total: -0.19 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.33 Total: -31.79 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.93 Total: -29.93 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.48 Total: -2.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.74 -8.07 -37.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413870876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.590 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds