Wall clock time and date at job start Sat Apr 11 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46886 * 2 1 4 4 N 1.46500 * 109.46654 * 180.02562 * 3 2 1 5 5 S 1.65603 * 119.99774 * 164.72734 * 4 3 2 6 6 O 1.42101 * 106.40287 * 178.53430 * 5 4 3 7 7 O 1.42107 * 106.40231 * 311.45485 * 5 4 3 8 8 C 1.76199 * 107.22123 * 64.99509 * 5 4 3 9 9 C 1.38286 * 119.93094 * 269.72876 * 8 5 4 10 10 C 1.38112 * 120.06951 * 179.76438 * 9 8 5 11 11 C 1.38866 * 119.92819 * 0.50812 * 10 9 8 12 12 N 1.39948 * 120.06887 * 179.72640 * 11 10 9 13 13 C 1.34774 * 119.99878 * 213.29430 * 12 11 10 14 14 O 1.21584 * 119.99990 * 5.30629 * 13 12 11 15 15 N 1.34780 * 119.99704 * 185.31516 * 13 12 11 16 16 C 1.46501 * 119.99753 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47406 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99582 * 0.02562 * 17 16 15 19 19 C 1.37868 * 120.00372 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00163 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99959 * 359.97438 * 19 17 16 22 22 H 1.48510 * 109.46891 * 90.00256 * 21 19 17 23 23 H 1.48497 * 109.47478 * 210.00049 * 21 19 17 24 24 H 1.48495 * 109.47278 * 330.00418 * 21 19 17 25 25 C 1.38858 * 119.86271 * 359.74208 * 11 10 9 26 26 C 1.38117 * 119.92944 * 0.02562 * 25 11 10 27 27 H 1.08997 * 109.46787 * 299.99574 * 1 2 3 28 28 H 1.09000 * 109.47438 * 59.99854 * 1 2 3 29 29 H 1.08998 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47271 * 240.00498 * 2 1 3 31 31 H 1.09000 * 109.47438 * 120.00146 * 2 1 3 32 32 H 1.08997 * 109.47059 * 60.00593 * 3 2 1 33 33 H 1.09000 * 109.47201 * 300.00291 * 3 2 1 34 34 H 0.97000 * 120.00495 * 344.99830 * 4 3 2 35 35 H 1.07998 * 119.96361 * 359.97438 * 9 8 5 36 36 H 1.08000 * 120.03387 * 180.25122 * 10 9 8 37 37 H 0.96998 * 119.99836 * 33.28928 * 12 11 10 38 38 H 0.96994 * 120.00485 * 0.02562 * 15 13 12 39 39 H 1.09004 * 109.47531 * 300.00047 * 16 15 13 40 40 H 1.09008 * 109.46967 * 59.99989 * 16 15 13 41 41 H 0.97005 * 120.00328 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.03758 * 179.97438 * 25 11 10 43 43 H 1.07999 * 119.96206 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 16 4.3328 2.8261 -0.3785 6 8 5.7137 2.5132 -0.2576 7 8 3.7514 3.3277 -1.5743 8 6 3.9781 4.0066 0.8805 9 6 2.9017 4.8632 0.7396 10 6 2.6181 5.7864 1.7270 11 6 3.4216 5.8610 2.8571 12 7 3.1404 6.7991 3.8568 13 6 4.1462 7.3598 4.5569 14 8 5.3008 7.1246 4.2569 15 7 3.8723 8.1811 5.5899 16 6 4.9657 8.7901 6.3514 17 6 4.3950 9.6581 7.4431 18 1 3.3249 9.7469 7.5585 19 6 5.2390 10.3389 8.2946 20 7 4.7410 11.0960 9.2477 21 14 7.0899 10.1848 8.0955 22 1 7.5777 11.2389 7.1701 23 1 7.7453 10.3456 9.4183 24 1 7.4184 8.8475 7.5397 25 6 4.5048 5.0029 2.9932 26 6 4.7803 4.0786 2.0045 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9901 0.6311 0.2165 35 1 2.2801 4.8080 -0.1418 36 1 1.7749 6.4524 1.6183 37 1 2.2215 7.0459 4.0456 38 1 2.9513 8.3683 5.8296 39 1 5.5809 8.0065 6.7939 40 1 5.5770 9.3993 5.6854 41 1 5.3348 11.5747 9.8470 42 1 5.1318 5.0587 3.8708 43 1 5.6229 3.4113 2.1096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488516245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:40 Heat of formation + Delta-G solvation = -83.387166 kcal Electronic energy + Delta-G solvation = -26543.224194 eV Core-core repulsion = 22522.306767 eV Total energy + Delta-G solvation = -4020.917427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.56106 -38.67403 -37.48970 -36.74496 -36.04391 -35.00313 -34.42746 -32.58174 -32.49953 -31.20906 -30.07865 -27.76972 -26.11607 -23.72955 -23.16206 -22.17554 -21.96004 -20.59662 -19.74344 -18.63356 -18.27810 -17.78194 -17.34250 -16.67832 -16.50256 -15.80043 -15.67104 -15.17994 -15.00695 -14.64845 -14.49938 -14.30843 -13.68416 -13.58897 -13.49710 -13.40442 -13.25281 -13.11354 -13.03750 -12.50393 -12.42585 -12.29288 -12.22561 -11.98675 -11.60157 -11.50861 -11.41974 -11.11976 -11.09393 -10.88388 -10.61697 -10.07709 -9.94900 -9.83157 -9.58984 -9.18426 -8.89274 -8.61534 -8.22191 -6.29892 -4.33402 0.17463 0.67663 1.18119 2.67785 2.81807 3.18006 3.22019 3.29158 3.36136 3.50162 3.68265 4.10671 4.25771 4.35818 4.49121 4.51646 4.63396 4.68099 4.73391 4.98127 5.05416 5.09181 5.09956 5.17924 5.25536 5.37718 5.48115 5.53051 5.64146 5.70036 5.75395 5.81443 5.98858 6.09801 6.33430 6.53749 6.56881 6.81849 6.94728 6.97554 7.11778 7.31413 8.10250 8.39780 8.65981 8.82328 9.29030 10.81743 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.002074 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.534164 B =13495.468584 C =14105.305383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C 0.114 3.886 4 N -1.120 6.120 5 S 2.700 3.300 6 O -0.961 6.961 7 O -0.961 6.961 8 C -0.707 4.707 9 C 0.000 4.000 10 C -0.178 4.178 11 C 0.242 3.758 12 N -0.694 5.694 13 C 0.691 3.309 14 O -0.579 6.579 15 N -0.711 5.711 16 C 0.236 3.764 17 C -0.547 4.547 18 H 0.080 0.920 19 C 0.079 3.921 20 N -0.890 5.890 21 Si 0.877 3.123 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.146 4.146 26 C 0.003 3.997 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.418 0.582 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.409 0.591 38 H 0.396 0.604 39 H 0.027 0.973 40 H 0.022 0.978 41 H 0.269 0.731 42 H 0.148 0.852 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.298 -21.537 -18.166 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C -0.013 4.013 4 N -0.880 5.880 5 S 2.791 3.209 6 O -0.951 6.951 7 O -0.951 6.951 8 C -0.796 4.796 9 C -0.020 4.020 10 C -0.200 4.200 11 C 0.144 3.856 12 N -0.341 5.341 13 C 0.391 3.609 14 O -0.456 6.456 15 N -0.362 5.362 16 C 0.114 3.886 17 C -0.585 4.585 18 H 0.098 0.902 19 C -0.125 4.125 20 N -0.527 5.527 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.185 1.185 25 C -0.167 4.167 26 C -0.017 4.017 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.252 0.748 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.245 0.755 38 H 0.230 0.770 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.166 0.834 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.727 -21.205 -18.889 29.709 hybrid contribution -0.109 0.389 1.129 1.200 sum -8.836 -20.816 -17.760 28.754 Atomic orbital electron populations 1.21729 0.94693 1.02297 1.02409 1.21710 0.96681 0.95569 1.03031 1.21401 0.78434 0.99010 1.02412 1.55569 1.15731 1.27966 1.88716 1.01597 0.72771 0.72686 0.73855 1.93596 1.30753 1.83730 1.87014 1.93573 1.78816 1.79820 1.42899 1.30584 1.08855 1.21429 1.18775 1.20611 0.93121 0.91269 0.97028 1.20953 1.03224 1.02662 0.93134 1.17874 0.94252 0.86572 0.86949 1.43015 1.10269 1.43575 1.37200 1.16139 0.84393 0.79899 0.80476 1.90921 1.18507 1.65897 1.70288 1.45494 1.11938 1.47937 1.30851 1.19482 0.85465 0.93087 0.90551 1.21033 0.95706 1.28222 1.13534 0.90198 1.24773 0.99230 0.94133 0.94399 1.69869 1.35842 1.29148 1.17803 0.86812 0.85044 0.79847 0.77954 1.19764 1.20796 1.18461 1.21406 0.98957 0.94805 1.01571 1.20754 0.95372 0.95377 0.90194 0.92254 0.92228 0.92187 0.91075 0.91157 0.91473 0.90127 0.74794 0.84162 0.84718 0.75495 0.77035 0.95497 0.95978 0.92123 0.83398 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 37.16 0.37 -0.20 16 2 C -0.13 -0.54 6.08 -26.73 -0.16 -0.71 16 3 C 0.11 0.62 6.23 -4.04 -0.03 0.59 16 4 N -1.12 -7.33 6.00 -10.61 -0.06 -7.40 16 5 S 2.70 27.38 5.74 -107.50 -0.62 26.76 16 6 O -0.96 -12.57 17.27 -57.17 -0.99 -13.56 16 7 O -0.96 -11.95 16.73 -57.17 -0.96 -12.91 16 8 C -0.71 -7.72 5.95 -39.55 -0.24 -7.96 16 9 C 0.00 0.00 9.51 -39.61 -0.38 -0.38 16 10 C -0.18 -1.86 9.96 -39.40 -0.39 -2.25 16 11 C 0.24 3.19 6.28 -83.69 -0.53 2.66 16 12 N -0.69 -9.20 5.35 -14.23 -0.08 -9.27 16 13 C 0.69 12.55 8.30 -86.92 -0.72 11.83 16 14 O -0.58 -12.66 14.03 5.29 0.07 -12.59 16 15 N -0.71 -13.47 5.55 -66.41 -0.37 -13.84 16 16 C 0.24 5.57 4.50 -5.19 -0.02 5.55 16 17 C -0.55 -14.47 9.83 -34.44 -0.34 -14.80 16 18 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 19 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 20 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 21 Si 0.88 20.93 27.47 -169.99 -4.67 16.27 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 25 C -0.15 -2.07 8.65 -39.40 -0.34 -2.41 16 26 C 0.00 0.04 9.51 -39.61 -0.38 -0.34 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.44 7.74 -51.93 -0.40 0.04 16 34 H 0.42 1.97 8.65 -34.47 -0.30 1.68 16 35 H 0.14 1.09 7.60 -52.49 -0.40 0.69 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.41 3.88 8.83 -40.82 -0.36 3.52 16 38 H 0.40 6.40 8.34 -40.82 -0.34 6.06 16 39 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 40 H 0.02 0.55 7.57 -51.92 -0.39 0.16 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 42 H 0.15 2.37 6.41 -52.48 -0.34 2.03 16 43 H 0.14 1.51 7.61 -52.49 -0.40 1.11 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -36.08 376.07 -10.31 -46.40 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.84 Total: 5.83 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -3.25 Total: -6.35 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.27 Total: -55.52 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.87 Total: -39.06 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 16 Polarization: 27.38 SS G_CDS: -0.62 Total: 26.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.08 -10.31 -46.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488516245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.990 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds