Wall clock time and date at job start Sat Apr 11 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46886 * 2 1 4 4 N 1.46500 * 109.46654 * 180.02562 * 3 2 1 5 5 S 1.65603 * 119.99774 * 164.72734 * 4 3 2 6 6 O 1.42101 * 106.40287 * 178.53430 * 5 4 3 7 7 O 1.42107 * 106.40231 * 311.45485 * 5 4 3 8 8 C 1.76199 * 107.22123 * 64.99509 * 5 4 3 9 9 C 1.38286 * 119.93094 * 269.72876 * 8 5 4 10 10 C 1.38112 * 120.06951 * 179.76438 * 9 8 5 11 11 C 1.38866 * 119.92819 * 0.50812 * 10 9 8 12 12 N 1.39948 * 120.06887 * 179.72640 * 11 10 9 13 13 C 1.34774 * 119.99878 * 213.29430 * 12 11 10 14 14 O 1.21584 * 119.99990 * 5.30629 * 13 12 11 15 15 N 1.34780 * 119.99704 * 185.31516 * 13 12 11 16 16 C 1.46501 * 119.99753 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47406 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99582 * 0.02562 * 17 16 15 19 19 C 1.37868 * 120.00372 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00163 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99959 * 359.97438 * 19 17 16 22 22 H 1.48510 * 109.46891 * 90.00256 * 21 19 17 23 23 H 1.48497 * 109.47478 * 210.00049 * 21 19 17 24 24 H 1.48495 * 109.47278 * 330.00418 * 21 19 17 25 25 C 1.38858 * 119.86271 * 359.74208 * 11 10 9 26 26 C 1.38117 * 119.92944 * 0.02562 * 25 11 10 27 27 H 1.08997 * 109.46787 * 299.99574 * 1 2 3 28 28 H 1.09000 * 109.47438 * 59.99854 * 1 2 3 29 29 H 1.08998 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47271 * 240.00498 * 2 1 3 31 31 H 1.09000 * 109.47438 * 120.00146 * 2 1 3 32 32 H 1.08997 * 109.47059 * 60.00593 * 3 2 1 33 33 H 1.09000 * 109.47201 * 300.00291 * 3 2 1 34 34 H 0.97000 * 120.00495 * 344.99830 * 4 3 2 35 35 H 1.07998 * 119.96361 * 359.97438 * 9 8 5 36 36 H 1.08000 * 120.03387 * 180.25122 * 10 9 8 37 37 H 0.96998 * 119.99836 * 33.28928 * 12 11 10 38 38 H 0.96994 * 120.00485 * 0.02562 * 15 13 12 39 39 H 1.09004 * 109.47531 * 300.00047 * 16 15 13 40 40 H 1.09008 * 109.46967 * 59.99989 * 16 15 13 41 41 H 0.97005 * 120.00328 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.03758 * 179.97438 * 25 11 10 43 43 H 1.07999 * 119.96206 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 16 4.3328 2.8261 -0.3785 6 8 5.7137 2.5132 -0.2576 7 8 3.7514 3.3277 -1.5743 8 6 3.9781 4.0066 0.8805 9 6 2.9017 4.8632 0.7396 10 6 2.6181 5.7864 1.7270 11 6 3.4216 5.8610 2.8571 12 7 3.1404 6.7991 3.8568 13 6 4.1462 7.3598 4.5569 14 8 5.3008 7.1246 4.2569 15 7 3.8723 8.1811 5.5899 16 6 4.9657 8.7901 6.3514 17 6 4.3950 9.6581 7.4431 18 1 3.3249 9.7469 7.5585 19 6 5.2390 10.3389 8.2946 20 7 4.7410 11.0960 9.2477 21 14 7.0899 10.1848 8.0955 22 1 7.5777 11.2389 7.1701 23 1 7.7453 10.3456 9.4183 24 1 7.4184 8.8475 7.5397 25 6 4.5048 5.0029 2.9932 26 6 4.7803 4.0786 2.0045 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9901 0.6311 0.2165 35 1 2.2801 4.8080 -0.1418 36 1 1.7749 6.4524 1.6183 37 1 2.2215 7.0459 4.0456 38 1 2.9513 8.3683 5.8296 39 1 5.5809 8.0065 6.7939 40 1 5.5770 9.3993 5.6854 41 1 5.3348 11.5747 9.8470 42 1 5.1318 5.0587 3.8708 43 1 5.6229 3.4113 2.1096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488516245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:39 Heat of formation + Delta-G solvation = -112.387199 kcal Electronic energy + Delta-G solvation = -26544.481729 eV Core-core repulsion = 22522.306767 eV Total energy + Delta-G solvation = -4022.174962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79905 -39.82536 -38.38201 -37.23402 -36.96674 -36.44998 -35.92098 -34.47246 -33.00243 -32.12118 -31.29356 -29.50165 -26.52120 -25.07162 -24.12559 -23.54267 -22.52794 -22.02313 -20.52954 -20.10881 -19.21250 -18.74866 -18.42341 -18.21002 -17.36725 -16.84328 -16.71366 -16.24384 -16.16869 -15.99251 -15.53016 -15.49032 -15.09508 -14.65002 -14.51682 -14.36039 -14.26896 -14.04028 -13.98692 -13.67835 -13.61633 -13.23222 -13.16167 -13.07365 -12.74790 -12.55541 -12.43094 -12.12744 -11.95509 -11.88875 -11.75439 -11.68830 -11.66539 -11.34118 -10.94118 -10.44296 -10.15108 -10.09267 -9.45104 -8.41763 -6.49049 -0.64533 -0.26931 0.27165 1.32227 1.34640 1.46686 1.50848 1.84179 2.08696 2.26580 2.50189 2.79001 2.94027 3.20385 3.30386 3.75700 3.85700 3.97344 4.18455 4.22906 4.26372 4.37590 4.43974 4.59190 4.68031 4.76870 4.79561 4.85971 4.89317 4.99742 5.04600 5.09889 5.13835 5.22575 5.25523 5.31050 5.34380 5.39879 5.52085 5.82578 5.84182 6.10161 6.16253 6.52790 6.97012 7.15461 7.40676 8.72612 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.002074 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.534164 B =13495.468584 C =14105.305383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C 0.104 3.896 4 N -1.107 6.107 5 S 2.722 3.278 6 O -0.993 6.993 7 O -0.981 6.981 8 C -0.704 4.704 9 C 0.001 3.999 10 C -0.163 4.163 11 C 0.219 3.781 12 N -0.673 5.673 13 C 0.694 3.306 14 O -0.618 6.618 15 N -0.709 5.709 16 C 0.249 3.751 17 C -0.546 4.546 18 H 0.062 0.938 19 C 0.028 3.972 20 N -0.929 5.929 21 Si 0.935 3.065 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.168 4.168 26 C -0.005 4.005 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.427 0.573 35 H 0.170 0.830 36 H 0.170 0.830 37 H 0.429 0.571 38 H 0.410 0.590 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.273 0.727 42 H 0.121 0.879 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.546 -22.664 -19.845 32.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C -0.022 4.022 4 N -0.870 5.870 5 S 2.812 3.188 6 O -0.983 6.983 7 O -0.971 6.971 8 C -0.792 4.792 9 C -0.019 4.019 10 C -0.184 4.184 11 C 0.121 3.879 12 N -0.322 5.322 13 C 0.395 3.605 14 O -0.498 6.498 15 N -0.362 5.362 16 C 0.125 3.875 17 C -0.584 4.584 18 H 0.081 0.919 19 C -0.173 4.173 20 N -0.568 5.568 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.184 1.184 25 C -0.190 4.190 26 C -0.025 4.025 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.264 0.736 35 H 0.187 0.813 36 H 0.187 0.813 37 H 0.268 0.732 38 H 0.246 0.754 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.037 -22.358 -20.592 32.010 hybrid contribution 0.152 0.623 1.562 1.688 sum -9.885 -21.735 -19.030 30.533 Atomic orbital electron populations 1.21741 0.94245 1.02636 1.02584 1.21707 0.96984 0.94701 1.03413 1.21651 0.77254 1.00155 1.03102 1.55264 1.16362 1.26998 1.88390 1.00815 0.71936 0.72799 0.73223 1.93552 1.33134 1.84257 1.87346 1.93546 1.79031 1.80606 1.43901 1.30763 1.08697 1.21755 1.18027 1.21041 0.92817 0.90287 0.97748 1.21282 1.03137 1.02516 0.91501 1.18086 0.95063 0.86792 0.87945 1.42618 1.10157 1.42942 1.36475 1.16165 0.84676 0.79464 0.80233 1.90900 1.20588 1.67054 1.71283 1.45134 1.11628 1.48347 1.31120 1.19044 0.86314 0.92223 0.89890 1.21240 0.95062 1.28113 1.14019 0.91948 1.25550 1.03496 0.93986 0.94235 1.69968 1.37465 1.30411 1.18913 0.85890 0.80099 0.79825 0.78267 1.19121 1.19893 1.18369 1.21318 0.99675 0.96488 1.01526 1.20825 0.96010 0.95284 0.90362 0.92059 0.92099 0.91812 0.90942 0.90618 0.90392 0.89916 0.73567 0.81253 0.81295 0.73159 0.75417 0.96666 0.96939 0.91800 0.86085 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 71.98 0.71 -0.09 16 2 C -0.13 -0.78 6.08 30.60 0.19 -0.59 16 3 C 0.10 0.86 6.23 86.38 0.54 1.40 16 4 N -1.11 -12.31 6.00 -187.48 -1.12 -13.44 16 5 S 2.72 51.06 5.74 -56.49 -0.32 50.74 16 6 O -0.99 -25.33 17.27 -128.00 -2.21 -27.54 16 7 O -0.98 -22.46 16.73 -128.00 -2.14 -24.61 16 8 C -0.70 -14.15 5.95 22.29 0.13 -14.02 16 9 C 0.00 0.01 9.51 22.25 0.21 0.23 16 10 C -0.16 -2.89 9.96 22.39 0.22 -2.67 16 11 C 0.22 5.44 6.28 38.14 0.24 5.68 16 12 N -0.67 -16.91 5.35 -317.19 -1.70 -18.61 16 13 C 0.69 24.99 8.30 179.05 1.49 26.48 16 14 O -0.62 -27.41 14.03 -3.98 -0.06 -27.47 16 15 N -0.71 -26.66 5.55 -482.28 -2.68 -29.34 16 16 C 0.25 11.78 4.50 85.63 0.38 12.16 16 17 C -0.55 -29.13 9.83 25.60 0.25 -28.88 16 18 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 19 C 0.03 1.55 5.47 84.65 0.46 2.01 16 20 N -0.93 -54.33 13.96 21.44 0.30 -54.03 16 21 Si 0.94 43.25 27.47 68.60 1.88 45.13 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.26 -11.88 6.54 99.48 0.65 -11.23 16 25 C -0.17 -4.80 8.65 22.39 0.19 -4.61 16 26 C 0.00 -0.12 9.51 22.25 0.21 0.10 16 27 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.68 7.74 -2.39 -0.02 0.67 16 34 H 0.43 3.27 8.65 -96.75 -0.84 2.43 16 35 H 0.17 1.92 7.60 -2.91 -0.02 1.90 16 36 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.43 7.14 8.83 -92.71 -0.82 6.32 16 38 H 0.41 12.95 8.34 -92.71 -0.77 12.18 16 39 H 0.02 0.77 7.20 -2.38 -0.02 0.75 16 40 H 0.01 0.62 7.57 -2.38 -0.02 0.61 16 41 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 42 H 0.12 4.08 6.41 -2.91 -0.02 4.06 16 43 H 0.15 3.19 7.61 -2.91 -0.02 3.17 16 Total: -1.00 -78.20 376.07 -4.23 -82.43 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -1.41 Total: 19.54 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 5.24 Total: -2.80 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -5.20 Total: -115.42 kcal Atomic # 8 Polarization: -75.20 SS G_CDS: -4.41 Total: -79.61 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.13 kcal Atomic # 16 Polarization: 51.06 SS G_CDS: -0.32 Total: 50.74 kcal Total: -78.20 -4.23 -82.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488516245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.961 kcal (2) G-P(sol) polarization free energy of solvation -78.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds