Wall clock time and date at job start Sat Apr 11 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46971 * 237.50017 * 3 2 1 5 5 C 1.36898 * 120.00188 * 87.97575 * 4 3 2 6 6 H 1.07998 * 120.00821 * 161.70620 * 5 4 3 7 7 C 1.39028 * 119.99612 * 341.70552 * 5 4 3 8 8 N 1.31381 * 120.00033 * 0.47512 * 7 5 4 9 9 Si 1.86807 * 120.00038 * 180.47520 * 7 5 4 10 10 H 1.48498 * 109.47022 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47081 * 119.99785 * 9 7 5 12 12 H 1.48496 * 109.46948 * 240.00099 * 9 7 5 13 13 C 1.34778 * 120.00473 * 267.97403 * 4 3 2 14 14 O 1.21618 * 120.00133 * 183.79422 * 13 4 3 15 15 C 1.47490 * 119.99526 * 3.80012 * 13 4 3 16 16 C 1.39811 * 120.07541 * 232.39184 * 15 13 4 17 17 C 1.37653 * 119.91848 * 179.97438 * 16 15 13 18 18 C 1.39147 * 120.08144 * 359.97438 * 17 16 15 19 19 N 1.39440 * 119.92298 * 179.97438 * 18 17 16 20 20 N 1.39946 * 119.77116 * 228.83082 * 19 18 17 21 21 C 1.34638 * 120.45915 * 198.50318 * 20 19 18 22 22 O 1.21278 * 119.85588 * 180.52730 * 21 20 19 23 23 C 1.50629 * 120.28841 * 0.50419 * 21 20 19 24 24 C 1.52945 * 109.57559 * 325.75704 * 23 21 20 25 25 C 1.34481 * 119.64792 * 49.10138 * 19 18 17 26 26 O 1.21277 * 119.90193 * 0.21957 * 25 19 18 27 27 C 1.39155 * 120.15749 * 0.27918 * 18 17 16 28 28 C 1.37660 * 120.07784 * 359.48585 * 27 18 17 29 29 H 4.40640 * 5.51349 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.46649 * 117.50453 * 3 2 1 31 31 H 1.09000 * 109.47228 * 357.50054 * 3 2 1 32 32 H 0.96998 * 119.99847 * 180.02562 * 8 7 5 33 33 H 1.07999 * 120.04143 * 359.95933 * 16 15 13 34 34 H 1.08006 * 119.95859 * 179.97438 * 17 16 15 35 35 H 0.96997 * 119.76866 * 18.77383 * 20 19 18 36 36 H 1.08991 * 109.45228 * 85.79580 * 23 21 20 37 37 H 1.09003 * 109.45104 * 205.72835 * 23 21 20 38 38 H 1.08998 * 109.45720 * 168.18351 * 24 23 21 39 39 H 1.08998 * 109.46068 * 288.12332 * 24 23 21 40 40 H 1.07994 * 119.96198 * 179.74624 * 27 18 17 41 41 H 1.07999 * 120.03780 * 180.23071 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7430 1.1649 5 6 3.3229 0.0981 2.3575 6 1 3.9449 0.5435 3.1198 7 6 2.7141 -1.1305 2.5875 8 7 1.9651 -1.6769 1.6567 9 14 2.9612 -2.0044 4.2200 10 1 3.8410 -1.1851 5.0918 11 1 1.6464 -2.1947 4.8835 12 1 3.5921 -3.3275 3.9826 13 6 3.3969 2.0609 1.0625 14 8 3.8671 2.6625 2.0091 15 6 3.1144 2.7734 -0.1976 16 6 4.1121 3.5391 -0.8085 17 6 3.8450 4.2023 -1.9847 18 6 2.5841 4.1110 -2.5661 19 7 2.3170 4.7847 -3.7574 20 7 1.1639 5.5699 -3.8682 21 6 0.6902 5.9199 -5.0789 22 8 -0.3045 6.6087 -5.1620 23 6 1.3907 5.4602 -6.3307 24 6 2.8985 5.4000 -6.0815 25 6 3.1682 4.6692 -4.7922 26 8 4.1592 3.9784 -4.6856 27 6 1.5871 3.3542 -1.9582 28 6 1.8485 2.6843 -0.7843 29 1 -1.0501 0.0000 -0.0003 30 1 3.0091 0.4754 -0.9115 31 1 3.0098 -1.0259 0.0448 32 1 1.5400 -2.5339 1.8173 33 1 5.0910 3.6102 -0.3579 34 1 4.6151 4.7943 -2.4570 35 1 0.7050 5.8673 -3.0671 36 1 1.0285 4.4699 -6.6065 37 1 1.1842 6.1603 -7.1402 38 1 3.3819 4.8740 -6.9047 39 1 3.2963 6.4127 -6.0148 40 1 0.6084 3.2889 -2.4100 41 1 1.0753 2.0941 -0.3150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490983951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:50 Heat of formation + Delta-G solvation = 49.811117 kcal Electronic energy + Delta-G solvation = -29079.548326 eV Core-core repulsion = 24928.962859 eV Total energy + Delta-G solvation = -4150.585467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.64102 -39.73544 -39.19325 -37.82138 -36.48602 -35.33132 -33.99319 -32.39484 -31.77364 -31.39879 -30.81262 -29.32879 -26.60153 -26.11338 -24.97011 -23.88622 -22.63225 -22.10633 -19.74219 -19.26033 -18.73922 -17.99249 -17.94398 -17.24991 -16.92580 -16.47596 -15.94270 -15.35564 -15.22949 -15.04531 -14.87792 -14.64978 -14.26414 -14.14068 -13.84837 -13.46434 -13.33628 -13.19878 -13.09612 -12.72846 -12.45200 -12.18770 -12.00354 -11.99605 -11.68942 -11.39674 -11.15662 -10.88017 -10.58149 -10.54845 -10.41807 -10.35020 -9.61662 -9.39335 -9.20940 -8.85895 -8.81626 -8.64416 -8.05762 -8.01432 -6.38649 -4.00731 0.93370 1.42738 1.54294 1.76407 2.28507 2.96642 3.08276 3.19674 3.25860 3.49176 3.74159 3.90156 4.00736 4.08373 4.12252 4.14837 4.35863 4.51789 4.77597 4.94012 4.98978 5.05134 5.07532 5.12124 5.17780 5.40342 5.55672 5.56513 5.62482 5.73966 5.93489 6.15031 6.25307 6.34978 6.38646 6.50320 6.73183 6.88040 6.98567 7.04599 7.12692 7.33167 7.43517 7.80903 7.91782 8.31200 8.75389 8.99753 9.20823 9.74649 10.55553 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021578 B = 0.002811 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.307113 B = 9957.796527 C =10434.878089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.087 4.087 3 C 0.227 3.773 4 N -0.429 5.429 5 C -0.305 4.305 6 H 0.107 0.893 7 C 0.030 3.970 8 N -0.871 5.871 9 Si 0.933 3.067 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.479 3.521 14 O -0.578 6.578 15 C -0.083 4.083 16 C -0.069 4.069 17 C -0.098 4.098 18 C 0.116 3.884 19 N -0.359 5.359 20 N -0.513 5.513 21 C 0.523 3.477 22 O -0.524 6.524 23 C -0.141 4.141 24 C -0.136 4.136 25 C 0.517 3.483 26 O -0.501 6.501 27 C -0.124 4.124 28 C -0.086 4.086 29 H 0.198 0.802 30 H 0.058 0.942 31 H 0.125 0.875 32 H 0.270 0.730 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.427 0.573 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.343 9.799 -16.184 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.089 4.089 3 C 0.104 3.896 4 N -0.145 5.145 5 C -0.432 4.432 6 H 0.125 0.875 7 C -0.173 4.173 8 N -0.510 5.510 9 Si 0.760 3.240 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.206 1.206 13 C 0.268 3.732 14 O -0.463 6.463 15 C -0.087 4.087 16 C -0.089 4.089 17 C -0.119 4.119 18 C 0.025 3.975 19 N -0.179 5.179 20 N -0.265 5.265 21 C 0.310 3.690 22 O -0.397 6.397 23 C -0.181 4.181 24 C -0.176 4.176 25 C 0.305 3.695 26 O -0.371 6.371 27 C -0.144 4.144 28 C -0.105 4.105 29 H 0.215 0.785 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.271 0.729 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.144 0.856 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.079 9.835 -15.958 18.776 hybrid contribution -0.669 -0.559 1.134 1.431 sum -1.748 9.275 -14.824 17.574 Atomic orbital electron populations 1.24232 0.95344 1.05972 1.04456 1.23004 0.94170 0.95205 0.96530 1.18600 0.84413 0.99887 0.86683 1.43654 1.54966 1.05719 1.10194 1.19833 1.28535 1.02021 0.92845 0.87482 1.25405 0.95176 0.97370 0.99342 1.69903 1.30475 1.18164 1.32492 0.85739 0.78254 0.78837 0.81198 1.19140 1.20642 1.20583 1.17888 0.85863 0.82156 0.87315 1.90649 1.49529 1.66396 1.39718 1.20429 0.94255 0.98280 0.95757 1.21088 0.99339 0.94969 0.93505 1.20852 0.95651 1.00554 0.94860 1.17665 0.95827 0.97297 0.86683 1.44536 1.15456 1.44285 1.13622 1.45623 1.20769 1.49920 1.10164 1.20679 0.84325 0.79764 0.84269 1.90850 1.25523 1.38150 1.85149 1.21787 0.94145 1.05822 0.96306 1.21787 0.96769 1.03402 0.95640 1.20696 0.82135 0.82219 0.84408 1.90853 1.25682 1.38966 1.81597 1.20909 0.99070 0.97243 0.97157 1.21720 0.97227 0.97344 0.94190 0.78462 0.92367 0.85708 0.91851 0.84667 0.85306 0.72912 0.87081 0.86175 0.86029 0.87135 0.85576 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.53 18.43 29.55 0.54 -4.98 16 2 C -0.09 -1.87 8.50 -37.12 -0.32 -2.18 16 3 C 0.23 4.98 4.76 -6.83 -0.03 4.95 16 4 N -0.43 -10.58 2.58 -119.14 -0.31 -10.89 16 5 C -0.30 -8.11 9.41 -15.00 -0.14 -8.25 16 6 H 0.11 2.99 7.28 -52.49 -0.38 2.60 16 7 C 0.03 0.76 5.35 -17.45 -0.09 0.66 16 8 N -0.87 -21.66 8.23 55.50 0.46 -21.20 16 9 Si 0.93 20.08 29.55 -169.99 -5.02 15.06 16 10 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.48 11.52 7.11 -12.49 -0.09 11.43 16 14 O -0.58 -15.79 16.70 5.26 0.09 -15.70 16 15 C -0.08 -1.61 4.58 -104.95 -0.48 -2.09 16 16 C -0.07 -1.16 9.74 -39.21 -0.38 -1.55 16 17 C -0.10 -1.43 8.66 -39.46 -0.34 -1.77 16 18 C 0.12 1.57 5.58 -83.72 -0.47 1.11 16 19 N -0.36 -3.95 3.56 -9.94 -0.04 -3.99 16 20 N -0.51 -4.78 6.01 31.17 0.19 -4.59 16 21 C 0.52 4.72 7.80 -11.08 -0.09 4.63 16 22 O -0.52 -6.46 17.93 5.56 0.10 -6.36 16 23 C -0.14 -0.77 6.15 -27.95 -0.17 -0.94 16 24 C -0.14 -0.79 6.15 -27.94 -0.17 -0.96 16 25 C 0.52 5.48 7.28 -11.15 -0.08 5.40 16 26 O -0.50 -7.08 15.61 5.56 0.09 -7.00 16 27 C -0.12 -1.74 9.69 -39.45 -0.38 -2.13 16 28 C -0.09 -1.48 7.79 -39.20 -0.31 -1.78 16 29 H 0.20 3.17 7.80 -54.08 -0.42 2.75 16 30 H 0.06 1.15 6.43 -51.93 -0.33 0.81 16 31 H 0.13 2.91 6.33 -51.93 -0.33 2.58 16 32 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 33 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.13 1.71 7.39 -52.48 -0.39 1.32 16 35 H 0.43 3.72 8.83 -182.72 -1.61 2.10 16 36 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.15 2.70 4.60 -52.49 -0.24 2.46 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -32.99 354.11 -7.49 -40.48 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.38 Total: 7.30 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -3.00 Total: 1.56 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.30 Total: -40.67 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: 0.27 Total: -29.06 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.99 -7.49 -40.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490983951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.286 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds