Wall clock time and date at job start Sat Apr 11 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46971 * 237.50017 * 3 2 1 5 5 C 1.36898 * 120.00188 * 87.97575 * 4 3 2 6 6 H 1.07998 * 120.00821 * 161.70620 * 5 4 3 7 7 C 1.39028 * 119.99612 * 341.70552 * 5 4 3 8 8 N 1.31381 * 120.00033 * 0.47512 * 7 5 4 9 9 Si 1.86807 * 120.00038 * 180.47520 * 7 5 4 10 10 H 1.48498 * 109.47022 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47081 * 119.99785 * 9 7 5 12 12 H 1.48496 * 109.46948 * 240.00099 * 9 7 5 13 13 C 1.34778 * 120.00473 * 267.97403 * 4 3 2 14 14 O 1.21618 * 120.00133 * 183.79422 * 13 4 3 15 15 C 1.47490 * 119.99526 * 3.80012 * 13 4 3 16 16 C 1.39811 * 120.07541 * 232.39184 * 15 13 4 17 17 C 1.37653 * 119.91848 * 179.97438 * 16 15 13 18 18 C 1.39147 * 120.08144 * 359.97438 * 17 16 15 19 19 N 1.39440 * 119.92298 * 179.97438 * 18 17 16 20 20 N 1.39946 * 119.77116 * 228.83082 * 19 18 17 21 21 C 1.34638 * 120.45915 * 198.50318 * 20 19 18 22 22 O 1.21278 * 119.85588 * 180.52730 * 21 20 19 23 23 C 1.50629 * 120.28841 * 0.50419 * 21 20 19 24 24 C 1.52945 * 109.57559 * 325.75704 * 23 21 20 25 25 C 1.34481 * 119.64792 * 49.10138 * 19 18 17 26 26 O 1.21277 * 119.90193 * 0.21957 * 25 19 18 27 27 C 1.39155 * 120.15749 * 0.27918 * 18 17 16 28 28 C 1.37660 * 120.07784 * 359.48585 * 27 18 17 29 29 H 4.40640 * 5.51349 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.46649 * 117.50453 * 3 2 1 31 31 H 1.09000 * 109.47228 * 357.50054 * 3 2 1 32 32 H 0.96998 * 119.99847 * 180.02562 * 8 7 5 33 33 H 1.07999 * 120.04143 * 359.95933 * 16 15 13 34 34 H 1.08006 * 119.95859 * 179.97438 * 17 16 15 35 35 H 0.96997 * 119.76866 * 18.77383 * 20 19 18 36 36 H 1.08991 * 109.45228 * 85.79580 * 23 21 20 37 37 H 1.09003 * 109.45104 * 205.72835 * 23 21 20 38 38 H 1.08998 * 109.45720 * 168.18351 * 24 23 21 39 39 H 1.08998 * 109.46068 * 288.12332 * 24 23 21 40 40 H 1.07994 * 119.96198 * 179.74624 * 27 18 17 41 41 H 1.07999 * 120.03780 * 180.23071 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7430 1.1649 5 6 3.3229 0.0981 2.3575 6 1 3.9449 0.5435 3.1198 7 6 2.7141 -1.1305 2.5875 8 7 1.9651 -1.6769 1.6567 9 14 2.9612 -2.0044 4.2200 10 1 3.8410 -1.1851 5.0918 11 1 1.6464 -2.1947 4.8835 12 1 3.5921 -3.3275 3.9826 13 6 3.3969 2.0609 1.0625 14 8 3.8671 2.6625 2.0091 15 6 3.1144 2.7734 -0.1976 16 6 4.1121 3.5391 -0.8085 17 6 3.8450 4.2023 -1.9847 18 6 2.5841 4.1110 -2.5661 19 7 2.3170 4.7847 -3.7574 20 7 1.1639 5.5699 -3.8682 21 6 0.6902 5.9199 -5.0789 22 8 -0.3045 6.6087 -5.1620 23 6 1.3907 5.4602 -6.3307 24 6 2.8985 5.4000 -6.0815 25 6 3.1682 4.6692 -4.7922 26 8 4.1592 3.9784 -4.6856 27 6 1.5871 3.3542 -1.9582 28 6 1.8485 2.6843 -0.7843 29 1 -1.0501 0.0000 -0.0003 30 1 3.0091 0.4754 -0.9115 31 1 3.0098 -1.0259 0.0448 32 1 1.5400 -2.5339 1.8173 33 1 5.0910 3.6102 -0.3579 34 1 4.6151 4.7943 -2.4570 35 1 0.7050 5.8673 -3.0671 36 1 1.0285 4.4699 -6.6065 37 1 1.1842 6.1603 -7.1402 38 1 3.3819 4.8740 -6.9047 39 1 3.2963 6.4127 -6.0148 40 1 0.6084 3.2889 -2.4100 41 1 1.0753 2.0941 -0.3150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490983951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:49 Heat of formation + Delta-G solvation = 28.320787 kcal Electronic energy + Delta-G solvation = -29080.480217 eV Core-core repulsion = 24928.962859 eV Total energy + Delta-G solvation = -4151.517358 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.51057 -41.13451 -40.23506 -39.17768 -37.47800 -37.20650 -34.74734 -33.99040 -33.19553 -32.81608 -32.09053 -30.51597 -28.34442 -27.07460 -26.38043 -24.98481 -23.92101 -23.18842 -21.35354 -20.05520 -19.77306 -19.61902 -18.75763 -18.63044 -18.22377 -17.98750 -17.01414 -16.83489 -16.41356 -16.02582 -15.88588 -15.85233 -15.62470 -15.45252 -15.27758 -14.88729 -14.67500 -14.26964 -14.15165 -13.85835 -13.82727 -13.53631 -13.50206 -13.18922 -12.90857 -12.76132 -12.51935 -12.46421 -12.16011 -12.09686 -11.41444 -11.27608 -11.23008 -10.98057 -10.64285 -10.50338 -10.32866 -10.10567 -9.91336 -9.17476 -8.30042 -6.01770 -0.29216 0.27304 0.52907 1.01295 1.33562 1.40801 1.49669 1.53772 1.83747 2.05326 2.27094 2.30945 2.42373 2.63499 3.05919 3.10720 3.38830 3.64255 3.70129 3.76284 3.79808 3.87151 4.02114 4.17154 4.20428 4.25476 4.40941 4.61381 4.77782 4.78513 4.80079 4.90451 5.06385 5.07322 5.12889 5.21733 5.39574 5.40233 5.45563 5.51491 5.78876 5.99337 6.31450 6.38748 6.55103 7.01949 7.05311 7.13958 7.31024 7.85756 8.61106 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021578 B = 0.002811 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.307113 B = 9957.796527 C =10434.878089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.127 4.127 3 C 0.236 3.764 4 N -0.438 5.438 5 C -0.346 4.346 6 H 0.079 0.921 7 C 0.004 3.996 8 N -0.874 5.874 9 Si 0.993 3.007 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.266 1.266 13 C 0.472 3.528 14 O -0.626 6.626 15 C -0.112 4.112 16 C -0.071 4.071 17 C -0.094 4.094 18 C 0.133 3.867 19 N -0.359 5.359 20 N -0.509 5.509 21 C 0.525 3.475 22 O -0.557 6.557 23 C -0.133 4.133 24 C -0.124 4.124 25 C 0.513 3.487 26 O -0.539 6.539 27 C -0.113 4.113 28 C -0.086 4.086 29 H 0.234 0.766 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.274 0.726 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.428 0.572 36 H 0.125 0.875 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.132 0.868 40 H 0.153 0.847 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 10.341 -19.152 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.129 4.129 3 C 0.114 3.886 4 N -0.154 5.154 5 C -0.473 4.473 6 H 0.097 0.903 7 C -0.199 4.199 8 N -0.511 5.511 9 Si 0.816 3.184 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.191 1.191 13 C 0.262 3.738 14 O -0.515 6.515 15 C -0.115 4.115 16 C -0.091 4.091 17 C -0.114 4.114 18 C 0.041 3.959 19 N -0.179 5.179 20 N -0.261 5.261 21 C 0.314 3.686 22 O -0.433 6.433 23 C -0.172 4.172 24 C -0.163 4.163 25 C 0.304 3.696 26 O -0.411 6.411 27 C -0.133 4.133 28 C -0.105 4.105 29 H 0.250 0.750 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.272 0.728 36 H 0.143 0.857 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.150 0.850 40 H 0.171 0.829 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.550 10.361 -18.983 21.776 hybrid contribution -0.273 -0.661 1.938 2.066 sum -2.822 9.700 -17.044 19.813 Atomic orbital electron populations 1.25050 0.96162 1.03972 1.02410 1.23046 0.94472 0.97018 0.98359 1.18457 0.85326 0.98535 0.86325 1.43819 1.55006 1.06207 1.10407 1.19727 1.30352 1.03438 0.93790 0.90311 1.26053 0.94480 0.97161 1.02180 1.70027 1.29786 1.18123 1.33184 0.84879 0.78082 0.77954 0.77443 1.20117 1.20099 1.19078 1.18626 0.84559 0.82046 0.88547 1.90584 1.51544 1.67406 1.41958 1.20071 0.96184 1.00251 0.95030 1.21074 0.98802 0.94874 0.94343 1.20938 0.96618 1.00032 0.93850 1.17714 0.95077 0.96011 0.87056 1.44595 1.16216 1.44239 1.12827 1.45691 1.20119 1.49479 1.10838 1.21337 0.83772 0.78709 0.84813 1.90849 1.27196 1.39744 1.85464 1.21882 0.93256 1.07163 0.94888 1.21882 0.97225 1.04032 0.93145 1.21724 0.81064 0.81529 0.85316 1.90849 1.27304 1.40677 1.82296 1.21031 1.00307 0.96101 0.95821 1.21558 0.95890 0.97887 0.95133 0.74991 0.90711 0.87620 0.91501 0.85034 0.83780 0.72795 0.85690 0.83548 0.83715 0.84970 0.82938 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -9.74 18.43 74.32 1.37 -8.37 16 2 C -0.13 -5.46 8.50 31.13 0.26 -5.20 16 3 C 0.24 10.70 4.76 84.58 0.40 11.10 16 4 N -0.44 -22.83 2.58 -649.09 -1.68 -24.50 16 5 C -0.35 -19.41 9.41 84.09 0.79 -18.62 16 6 H 0.08 4.75 7.28 -2.91 -0.02 4.73 16 7 C 0.00 0.20 5.35 84.95 0.45 0.66 16 8 N -0.87 -43.76 8.23 21.68 0.18 -43.58 16 9 Si 0.99 41.87 29.55 68.60 2.03 43.90 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 13 C 0.47 24.12 7.11 86.68 0.62 24.73 16 14 O -0.63 -36.72 16.70 -4.09 -0.07 -36.79 16 15 C -0.11 -4.47 4.58 -20.08 -0.09 -4.57 16 16 C -0.07 -2.46 9.74 22.51 0.22 -2.24 16 17 C -0.09 -2.64 8.66 22.35 0.19 -2.45 16 18 C 0.13 3.37 5.58 38.37 0.21 3.59 16 19 N -0.36 -6.92 3.56 -303.91 -1.08 -8.01 16 20 N -0.51 -8.05 6.01 -173.75 -1.04 -9.10 16 21 C 0.52 7.76 7.80 87.66 0.68 8.44 16 22 O -0.56 -12.37 17.93 -3.02 -0.05 -12.42 16 23 C -0.13 -0.85 6.15 29.81 0.18 -0.67 16 24 C -0.12 -0.87 6.15 29.81 0.18 -0.68 16 25 C 0.51 9.26 7.28 87.68 0.64 9.90 16 26 O -0.54 -14.02 15.61 -3.02 -0.05 -14.07 16 27 C -0.11 -2.99 9.69 22.35 0.22 -2.77 16 28 C -0.09 -2.95 7.79 22.51 0.18 -2.77 16 29 H 0.23 6.74 7.80 -4.41 -0.03 6.70 16 30 H 0.08 3.05 6.43 -2.39 -0.02 3.03 16 31 H 0.11 5.13 6.33 -2.39 -0.02 5.11 16 32 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 33 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 34 H 0.14 3.62 7.39 -2.91 -0.02 3.60 16 35 H 0.43 6.47 8.83 -213.42 -1.88 4.59 16 36 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 41 H 0.13 4.96 4.60 -2.91 -0.01 4.94 16 Total: -1.00 -75.88 354.11 3.97 -71.91 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -0.78 Total: 22.56 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 6.51 Total: 10.09 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -3.62 Total: -85.19 kcal Atomic # 8 Polarization: -63.11 SS G_CDS: -0.17 Total: -63.28 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -75.88 3.97 -71.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490983951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.233 kcal (2) G-P(sol) polarization free energy of solvation -75.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds