Wall clock time and date at job start Sat Apr 11 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35954 * 116.99886 * 2 1 4 4 C 1.38073 * 120.00289 * 359.97438 * 3 2 1 5 5 C 1.39979 * 119.84264 * 179.97438 * 4 3 2 6 6 C 1.46962 * 120.08029 * 179.97438 * 5 4 3 7 7 C 1.35026 * 120.00149 * 180.02562 * 6 5 4 8 8 C 1.46251 * 120.00107 * 179.72723 * 7 6 5 9 9 O 1.21724 * 120.00176 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00252 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00679 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47440 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47198 * 180.02562 * 12 11 10 14 14 F 1.39895 * 109.47358 * 299.99943 * 12 11 10 15 15 F 1.39899 * 109.47198 * 60.00230 * 12 11 10 16 16 C 1.40030 * 119.84099 * 0.25534 * 5 4 3 17 17 C 1.37651 * 119.99651 * 359.48870 * 16 5 4 18 18 C 1.39049 * 120.16215 * 0.50959 * 17 16 5 19 19 O 1.35623 * 119.91983 * 179.76593 * 18 17 16 20 20 C 1.34757 * 116.99899 * 354.38344 * 19 18 17 21 21 H 1.08003 * 120.00150 * 5.06176 * 20 19 18 22 22 C 1.38705 * 120.00042 * 185.06816 * 20 19 18 23 23 N 1.31524 * 119.99707 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00195 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46966 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47555 * 119.99863 * 24 22 20 27 27 H 1.48503 * 109.46769 * 239.99632 * 24 22 20 28 28 H 1.09001 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47140 * 299.99904 * 1 2 3 30 30 H 1.09002 * 109.47026 * 60.00206 * 1 2 3 31 31 H 1.08004 * 120.08220 * 359.95509 * 4 3 2 32 32 H 1.07999 * 120.00384 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.99930 * 0.02562 * 7 6 5 34 34 H 0.97007 * 120.00021 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.47094 * 300.00858 * 11 10 8 36 36 H 1.08998 * 109.46997 * 59.99553 * 11 10 8 37 37 H 1.08998 * 109.47194 * 59.99338 * 13 12 11 38 38 H 1.08994 * 109.47640 * 180.02562 * 13 12 11 39 39 H 1.09012 * 109.46983 * 300.00223 * 13 12 11 40 40 H 1.08004 * 120.00196 * 179.74145 * 16 5 4 41 41 H 1.08004 * 119.91893 * 180.23858 * 17 16 5 42 42 H 0.97008 * 119.99772 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9332 3.6148 0.0000 6 6 1.1379 4.8507 -0.0011 7 6 1.7559 6.0512 -0.0011 8 6 0.9645 7.2811 -0.0083 9 8 -0.2513 7.2225 -0.0147 10 7 1.5813 8.4794 -0.0078 11 6 0.7887 9.7114 -0.0155 12 6 1.7258 10.9208 -0.0138 13 6 0.8979 12.2075 -0.0212 14 9 2.5265 10.8888 1.1329 15 9 2.5389 10.8824 -1.1516 16 6 3.3319 3.6804 -0.0043 17 6 4.0752 2.5218 0.0015 18 6 3.4405 1.2846 0.0011 19 8 4.1776 0.1461 0.0021 20 6 5.5133 0.2821 -0.1140 21 1 5.9574 1.2665 -0.1201 22 6 6.3177 -0.8424 -0.2259 23 7 5.7768 -2.0412 -0.2181 24 14 8.1692 -0.6540 -0.3861 25 1 8.5235 0.7880 -0.3681 26 1 8.8369 -1.3424 0.7477 27 1 8.6192 -1.2580 -1.6660 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2156 2.3144 -0.0017 32 1 0.0592 4.7987 -0.0020 33 1 2.8347 6.1033 -0.0007 34 1 2.5503 8.5262 -0.0030 35 1 0.1650 9.7366 -0.9091 36 1 0.1548 9.7411 0.8707 37 1 0.2646 12.2372 0.8654 38 1 1.5654 13.0691 -0.0205 39 1 0.2736 12.2327 -0.9145 40 1 3.8276 4.6399 -0.0081 41 1 5.1540 2.5738 0.0021 42 1 6.3395 -2.8276 -0.2960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493629547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:58 Heat of formation + Delta-G solvation = -183.141855 kcal Electronic energy + Delta-G solvation = -28072.921033 eV Core-core repulsion = 23461.544781 eV Total energy + Delta-G solvation = -4611.376252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.05709 -48.05374 -41.33322 -40.68677 -39.31888 -38.12071 -36.19531 -34.64576 -33.94578 -32.95676 -31.29288 -30.24012 -28.33368 -27.65898 -27.19879 -24.65609 -23.34617 -22.92753 -22.25549 -20.63316 -19.95343 -19.34116 -18.72720 -18.66584 -17.96477 -17.48435 -17.15437 -16.88784 -16.68180 -16.34780 -16.20790 -16.19366 -15.57625 -15.47752 -15.28515 -15.04359 -15.02650 -14.84179 -14.41379 -14.00609 -13.94668 -13.75215 -13.67413 -13.36421 -13.30743 -13.23359 -13.11559 -12.89015 -12.72359 -12.51280 -12.13410 -12.12977 -12.09133 -12.01429 -11.35361 -11.08825 -11.01453 -10.56793 -10.26868 -9.48655 -8.54691 -8.48138 -6.12394 -0.34309 0.53716 1.07475 1.36942 1.46365 1.55753 1.99942 2.16525 2.28353 2.54965 2.60328 2.85079 3.08510 3.13353 3.34735 3.38359 3.52628 3.70938 3.91281 4.12240 4.19317 4.31069 4.31706 4.37202 4.42699 4.46504 4.52454 4.60842 4.62095 4.71480 4.78084 4.89798 5.02669 5.06272 5.08519 5.18379 5.29714 5.43037 5.50413 5.76050 5.91069 5.97077 6.37450 6.59320 6.94614 7.11540 7.74598 8.73818 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.002112 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.062595 B =13257.323664 C =15153.091787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.038 3.962 4 C -0.132 4.132 5 C -0.135 4.135 6 C 0.019 3.981 7 C -0.244 4.244 8 C 0.558 3.442 9 O -0.584 6.584 10 N -0.723 5.723 11 C 0.078 3.922 12 C 0.277 3.723 13 C -0.190 4.190 14 F -0.207 7.207 15 F -0.207 7.207 16 C -0.066 4.066 17 C -0.219 4.219 18 C 0.102 3.898 19 O -0.211 6.211 20 C -0.414 4.414 21 H 0.110 0.890 22 C -0.023 4.023 23 N -0.914 5.914 24 Si 1.022 2.978 25 H -0.246 1.246 26 H -0.269 1.269 27 H -0.270 1.270 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.157 0.843 32 H 0.131 0.869 33 H 0.149 0.851 34 H 0.414 0.586 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.156 0.844 41 H 0.136 0.864 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 26.153 0.187 27.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C -0.007 4.007 4 C -0.151 4.151 5 C -0.136 4.136 6 C 0.000 4.000 7 C -0.265 4.265 8 C 0.349 3.651 9 O -0.467 6.467 10 N -0.375 5.375 11 C -0.046 4.046 12 C 0.241 3.759 13 C -0.248 4.248 14 F -0.188 7.188 15 F -0.188 7.188 16 C -0.084 4.084 17 C -0.238 4.238 18 C 0.050 3.950 19 O -0.117 6.117 20 C -0.490 4.490 21 H 0.127 0.873 22 C -0.221 4.221 23 N -0.551 5.551 24 Si 0.841 3.159 25 H -0.169 1.169 26 H -0.195 1.195 27 H -0.195 1.195 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.175 0.825 32 H 0.149 0.851 33 H 0.167 0.833 34 H 0.251 0.749 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.173 0.827 41 H 0.154 0.846 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.024 25.495 0.190 27.395 hybrid contribution 1.241 -0.503 -0.045 1.340 sum -8.782 24.991 0.145 26.490 Atomic orbital electron populations 1.23284 0.77056 1.05003 1.02125 1.86193 1.22991 1.26813 1.89870 1.18377 0.89099 0.85855 1.07364 1.21263 1.00173 0.89951 1.03696 1.18533 0.92955 0.92096 1.09998 1.22149 0.99430 0.90216 0.88244 1.22741 1.01127 0.90967 1.11621 1.18411 0.87185 0.84434 0.75034 1.90787 1.15378 1.88112 1.52395 1.45633 1.11171 1.04922 1.75755 1.22524 0.93987 0.81606 1.06509 1.21647 0.83733 0.99442 0.71061 1.22788 1.01253 0.93252 1.07463 1.93035 1.76762 1.97706 1.51327 1.93036 1.76107 1.97693 1.51995 1.21300 0.92697 0.97868 0.96497 1.21031 1.01102 0.90836 1.10845 1.19590 0.89597 0.88110 0.97726 1.83978 1.20239 1.27819 1.79640 1.22021 0.78804 0.95907 1.52246 0.87287 1.26693 1.06201 0.93558 0.95686 1.70214 1.38466 0.98833 1.47558 0.84487 0.73125 0.79911 0.78416 1.16890 1.19456 1.19502 0.87254 0.91523 0.91596 0.82538 0.85100 0.83330 0.74943 0.87760 0.87738 0.87387 0.88954 0.87401 0.82666 0.84603 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.81 113.37 1.11 1.67 16 2 O -0.34 -15.09 10.28 -79.06 -0.81 -15.91 16 3 C 0.04 1.65 6.70 22.57 0.15 1.81 16 4 C -0.13 -4.46 8.77 22.65 0.20 -4.26 16 5 C -0.13 -4.19 5.87 -20.14 -0.12 -4.30 16 6 C 0.02 0.50 9.45 23.82 0.23 0.72 16 7 C -0.24 -5.47 9.41 23.61 0.22 -5.24 16 8 C 0.56 13.02 7.74 86.33 0.67 13.69 16 9 O -0.58 -17.37 16.23 -4.43 -0.07 -17.45 16 10 N -0.72 -12.49 5.41 -467.51 -2.53 -15.02 16 11 C 0.08 1.04 5.19 86.38 0.45 1.48 16 12 C 0.28 3.17 2.06 30.59 0.06 3.23 16 13 C -0.19 -0.91 9.38 71.98 0.68 -0.24 16 14 F -0.21 -3.16 16.92 44.97 0.76 -2.40 16 15 F -0.21 -3.17 16.92 44.97 0.76 -2.41 16 16 C -0.07 -2.12 9.40 22.57 0.21 -1.91 16 17 C -0.22 -9.04 9.14 22.33 0.20 -8.84 16 18 C 0.10 5.06 6.67 22.80 0.15 5.22 16 19 O -0.21 -12.76 9.52 -6.63 -0.06 -12.82 16 20 C -0.41 -23.64 9.48 67.93 0.64 -23.00 16 21 H 0.11 5.56 5.18 -2.91 -0.02 5.55 16 22 C -0.02 -1.29 5.49 84.85 0.47 -0.82 16 23 N -0.91 -56.01 13.67 21.62 0.30 -55.71 16 24 Si 1.02 41.90 29.55 68.60 2.03 43.93 16 25 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 26 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 27 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 28 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.07 1.61 7.66 -2.39 -0.02 1.59 16 30 H 0.07 1.60 7.66 -2.39 -0.02 1.58 16 31 H 0.16 4.17 6.28 -2.91 -0.02 4.15 16 32 H 0.13 3.28 7.52 -2.91 -0.02 3.26 16 33 H 0.15 2.67 6.06 -2.91 -0.02 2.65 16 34 H 0.41 5.92 8.34 -92.70 -0.77 5.14 16 35 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 40 H 0.16 3.73 6.15 -2.91 -0.02 3.71 16 41 H 0.14 5.54 5.61 -2.91 -0.02 5.52 16 42 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -79.28 372.03 6.01 -73.28 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.32 Total: 25.30 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 5.32 Total: -20.80 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -2.23 Total: -70.73 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -0.95 Total: -46.18 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 1.52 Total: -4.81 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -79.28 6.01 -73.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493629547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.867 kcal (2) G-P(sol) polarization free energy of solvation -79.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds