Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47263 * 2 1 4 4 N 1.46502 * 109.47153 * 120.00264 * 2 1 3 5 5 C 1.46501 * 119.99761 * 121.99581 * 4 2 1 6 6 C 1.50697 * 109.47093 * 269.99833 * 5 4 2 7 7 H 1.08004 * 119.99936 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00364 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00526 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99615 * 0.02562 * 8 6 5 11 11 H 1.48508 * 109.47054 * 89.99835 * 10 8 6 12 12 H 1.48501 * 109.47124 * 209.99801 * 10 8 6 13 13 H 1.48497 * 109.47437 * 330.00012 * 10 8 6 14 14 C 1.34767 * 119.99874 * 301.99290 * 4 2 1 15 15 O 1.21552 * 120.00307 * 211.45994 * 14 4 2 16 16 C 1.47863 * 120.00342 * 31.46415 * 14 4 2 17 17 C 1.39584 * 120.51629 * 318.11335 * 16 14 4 18 18 N 1.31654 * 120.72789 * 179.97438 * 17 16 14 19 19 C 1.31884 * 121.96739 * 359.97438 * 18 17 16 20 20 C 1.38989 * 120.97215 * 359.97438 * 19 18 17 21 21 N 1.39741 * 120.42030 * 180.02562 * 20 19 18 22 22 S 1.65604 * 119.99945 * 244.36895 * 21 20 19 23 23 C 1.81399 * 104.44988 * 64.95979 * 22 21 20 24 24 O 1.42101 * 104.27398 * 181.03024 * 22 21 20 25 25 O 1.42101 * 104.27466 * 308.88774 * 22 21 20 26 26 C 1.39064 * 119.15251 * 0.03188 * 20 19 18 27 27 H 1.08996 * 109.47352 * 253.85541 * 1 2 3 28 28 H 1.09006 * 109.46880 * 13.85250 * 1 2 3 29 29 H 1.08997 * 109.47093 * 133.85037 * 1 2 3 30 30 H 1.09002 * 109.47087 * 240.00288 * 2 1 3 31 31 H 1.09003 * 109.47333 * 222.52155 * 3 2 1 32 32 H 1.09001 * 109.47370 * 342.52400 * 3 2 1 33 33 H 1.09003 * 109.46863 * 102.52218 * 3 2 1 34 34 H 1.09002 * 109.47264 * 30.00161 * 5 4 2 35 35 H 1.09000 * 109.46832 * 150.00323 * 5 4 2 36 36 H 0.96995 * 120.00227 * 179.97438 * 9 8 6 37 37 H 1.08001 * 119.63756 * 359.97268 * 17 16 14 38 38 H 1.08001 * 119.51570 * 180.02562 * 19 18 17 39 39 H 0.96998 * 120.00116 * 64.37375 * 21 20 19 40 40 H 1.09003 * 109.46841 * 64.95645 * 23 22 21 41 41 H 1.08996 * 109.47093 * 184.96352 * 23 22 21 42 42 H 1.09000 * 109.46922 * 304.96503 * 23 22 21 43 43 H 1.08003 * 120.88845 * 180.25003 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8963 -1.8558 1.0621 6 6 2.0613 -3.1080 0.9875 7 1 0.9843 -3.0426 1.0348 8 6 2.6722 -4.3374 0.8589 9 7 1.9435 -5.4303 0.7944 10 14 4.5350 -4.4507 0.7778 11 1 5.0821 -4.5999 2.1503 12 1 4.9242 -5.6270 -0.0408 13 1 5.0796 -3.2153 0.1595 14 6 1.6599 -0.2542 2.4198 15 8 2.4210 -0.3843 3.3585 16 6 0.3408 0.3829 2.6205 17 6 -0.1559 1.2938 1.6866 18 7 -1.3301 1.8631 1.8609 19 6 -2.0831 1.6030 2.9119 20 6 -1.6635 0.7073 3.8884 21 7 -2.4709 0.4399 4.9971 22 16 -1.9566 0.8554 6.5155 23 6 -1.8751 2.6673 6.4857 24 8 -3.0026 0.4173 7.3718 25 8 -0.6524 0.2989 6.6082 26 6 -0.4299 0.0809 3.7480 27 1 -0.3634 -0.2857 0.9871 28 1 -0.3633 0.9978 -0.2461 29 1 -0.3633 -0.7119 -0.7411 30 1 1.8933 -0.5138 -0.8900 31 1 2.8752 1.5326 -0.6946 32 1 1.2370 2.1118 -0.3086 33 1 2.3712 1.7107 1.0033 34 1 3.4903 -1.7604 0.1531 35 1 3.5595 -1.9122 1.9253 36 1 2.3733 -6.2951 0.7035 37 1 0.4296 1.5341 0.8114 38 1 -3.0402 2.0925 3.0150 39 1 -3.3325 0.0108 4.8774 40 1 -2.8777 3.0739 6.3534 41 1 -1.4578 3.0277 7.4260 42 1 -1.2407 2.9889 5.6597 43 1 -0.0780 -0.6229 4.4878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534314598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = 26.337504 kcal Electronic energy + Delta-G solvation = -28772.128191 eV Core-core repulsion = 24755.968783 eV Total energy + Delta-G solvation = -4016.159408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56421 -38.98470 -37.37588 -36.87147 -36.20298 -35.51133 -33.42758 -32.15892 -31.71623 -29.80823 -29.54263 -27.92665 -27.05164 -24.70717 -23.63633 -22.19915 -21.87601 -19.94434 -19.09879 -18.11009 -17.56086 -17.22954 -16.99859 -16.82934 -16.30312 -15.98960 -15.43493 -15.30101 -14.68854 -14.60533 -14.26591 -14.01241 -13.67359 -13.52072 -13.39054 -13.14959 -12.84857 -12.63074 -12.50592 -12.34793 -12.22002 -12.11248 -12.06882 -11.92892 -11.54927 -11.38467 -11.26877 -10.90761 -10.83663 -10.64929 -10.46903 -10.22621 -9.90354 -9.67646 -9.57297 -9.14011 -8.65464 -8.46247 -7.76285 -6.15384 -4.15971 -0.10980 0.71942 1.14376 2.31729 2.97929 3.25816 3.31947 3.34685 3.46714 3.50906 3.75216 3.91721 4.20856 4.34424 4.41358 4.63724 4.67125 4.71315 4.78041 4.84480 4.98648 5.09396 5.17298 5.24964 5.32012 5.37531 5.49014 5.60853 5.69922 5.75320 5.91384 6.03945 6.12881 6.16064 6.35140 6.39910 6.65573 6.73389 6.86903 7.29287 7.51985 7.72264 8.08092 8.38355 8.63456 8.87953 9.44338 10.97446 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.003720 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.644981 B = 7524.755812 C = 8612.445872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.134 3.866 3 C -0.186 4.186 4 N -0.601 5.601 5 C 0.218 3.782 6 C -0.539 4.539 7 H 0.076 0.924 8 C 0.075 3.925 9 N -0.894 5.894 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.576 3.424 15 O -0.519 6.519 16 C -0.186 4.186 17 C 0.130 3.870 18 N -0.500 5.500 19 C 0.119 3.881 20 C 0.043 3.957 21 N -1.053 6.053 22 S 2.605 3.395 23 C -0.670 4.670 24 O -0.955 6.955 25 O -0.939 6.939 26 C -0.015 4.015 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.266 0.734 37 H 0.209 0.791 38 H 0.160 0.840 39 H 0.425 0.575 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 19.355 2.700 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.029 3.971 3 C -0.244 4.244 4 N -0.334 5.334 5 C 0.098 3.902 6 C -0.577 4.577 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.532 5.532 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.362 3.638 15 O -0.394 6.394 16 C -0.193 4.193 17 C -0.026 4.026 18 N -0.210 5.210 19 C -0.040 4.040 20 C -0.054 4.054 21 N -0.807 5.807 22 S 2.698 3.302 23 C -0.820 4.820 24 O -0.945 6.945 25 O -0.928 6.928 26 C -0.043 4.043 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.225 0.775 38 H 0.178 0.822 39 H 0.263 0.737 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.802 19.118 3.361 21.314 hybrid contribution 0.508 -0.660 0.148 0.846 sum -8.294 18.458 3.510 20.537 Atomic orbital electron populations 1.23736 0.96141 1.02371 1.04113 1.21090 0.93541 0.92390 0.90090 1.22771 1.02105 0.96041 1.03469 1.47718 1.50839 1.31432 1.03371 1.19762 0.90044 0.82666 0.97688 1.21389 0.95395 0.89291 1.51660 0.90603 1.24843 0.98214 0.95465 0.94270 1.69886 1.35639 0.98098 1.49580 0.86866 0.86022 0.78076 0.78868 1.19810 1.21023 1.18906 1.17752 0.84892 0.77715 0.83407 1.90748 1.51861 1.54693 1.42119 1.21323 0.98492 1.02407 0.97035 1.25084 0.92738 0.88427 0.96386 1.67877 1.05869 1.25642 1.21579 1.23139 0.99005 0.92715 0.89165 1.18059 0.93420 1.01435 0.92472 1.53087 1.30619 1.75019 1.21956 1.05260 0.74622 0.77836 0.72504 1.30478 1.11732 1.27932 1.11821 1.93630 1.57351 1.79973 1.63586 1.93693 1.40040 1.74626 1.84491 1.22153 0.92224 0.94756 0.95199 0.89379 0.90195 0.91309 0.87837 0.90882 0.90691 0.91527 0.94894 0.94227 0.92442 0.77513 0.82245 0.73681 0.85145 0.85111 0.85247 0.82346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.82 7.73 37.16 0.29 -2.53 16 2 C 0.13 1.98 3.27 -67.93 -0.22 1.76 16 3 C -0.19 -2.08 8.34 37.16 0.31 -1.77 16 4 N -0.60 -11.91 2.38 -168.57 -0.40 -12.31 16 5 C 0.22 5.15 4.38 -5.19 -0.02 5.12 16 6 C -0.54 -14.87 9.94 -34.44 -0.34 -15.22 16 7 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 8 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.89 -26.91 13.96 55.43 0.77 -26.13 16 10 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 14 C 0.58 11.78 5.91 -12.33 -0.07 11.71 16 15 O -0.52 -12.46 16.78 5.32 0.09 -12.37 16 16 C -0.19 -3.10 4.26 -104.85 -0.45 -3.54 16 17 C 0.13 1.73 5.85 -17.13 -0.10 1.63 16 18 N -0.50 -5.95 10.31 -17.52 -0.18 -6.13 16 19 C 0.12 1.21 11.11 -17.25 -0.19 1.02 16 20 C 0.04 0.51 5.90 -83.67 -0.49 0.01 16 21 N -1.05 -9.67 5.64 32.47 0.18 -9.49 16 22 S 2.60 25.67 6.08 -107.50 -0.65 25.01 16 23 C -0.67 -3.96 10.84 101.05 1.10 -2.87 16 24 O -0.96 -11.75 18.08 -57.54 -1.04 -12.79 16 25 O -0.94 -13.84 16.07 -57.54 -0.92 -14.76 16 26 C -0.02 -0.24 8.84 -38.66 -0.34 -0.59 16 27 H 0.09 1.40 3.95 -62.48 -0.25 1.15 16 28 H 0.08 0.86 5.40 -51.93 -0.28 0.58 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.52 7.81 -51.93 -0.41 1.11 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.63 6.23 -51.93 -0.32 0.31 16 33 H 0.07 0.83 6.78 -51.93 -0.35 0.48 16 34 H 0.03 0.73 7.00 -51.93 -0.36 0.37 16 35 H 0.04 1.00 6.78 -51.93 -0.35 0.65 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.21 2.44 1.07 -53.96 -0.06 2.38 16 38 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.43 2.95 8.92 -34.47 -0.31 2.64 16 40 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.13 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.16 2.87 7.08 -52.48 -0.37 2.49 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -38.14 355.52 -7.29 -45.44 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.19 Total: 5.03 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -0.64 Total: -3.23 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.37 Total: -54.06 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.88 Total: -39.93 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 25.67 SS G_CDS: -0.65 Total: 25.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.14 -7.29 -45.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534314598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.773 kcal (2) G-P(sol) polarization free energy of solvation -38.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds