Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47263 * 2 1 4 4 N 1.46502 * 109.47153 * 120.00264 * 2 1 3 5 5 C 1.46501 * 119.99761 * 121.99581 * 4 2 1 6 6 C 1.50697 * 109.47093 * 269.99833 * 5 4 2 7 7 H 1.08004 * 119.99936 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00364 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00526 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99615 * 0.02562 * 8 6 5 11 11 H 1.48508 * 109.47054 * 89.99835 * 10 8 6 12 12 H 1.48501 * 109.47124 * 209.99801 * 10 8 6 13 13 H 1.48497 * 109.47437 * 330.00012 * 10 8 6 14 14 C 1.34767 * 119.99874 * 301.99290 * 4 2 1 15 15 O 1.21552 * 120.00307 * 211.45994 * 14 4 2 16 16 C 1.47863 * 120.00342 * 31.46415 * 14 4 2 17 17 C 1.39584 * 120.51629 * 318.11335 * 16 14 4 18 18 N 1.31654 * 120.72789 * 179.97438 * 17 16 14 19 19 C 1.31884 * 121.96739 * 359.97438 * 18 17 16 20 20 C 1.38989 * 120.97215 * 359.97438 * 19 18 17 21 21 N 1.39741 * 120.42030 * 180.02562 * 20 19 18 22 22 S 1.65604 * 119.99945 * 244.36895 * 21 20 19 23 23 C 1.81399 * 104.44988 * 64.95979 * 22 21 20 24 24 O 1.42101 * 104.27398 * 181.03024 * 22 21 20 25 25 O 1.42101 * 104.27466 * 308.88774 * 22 21 20 26 26 C 1.39064 * 119.15251 * 0.03188 * 20 19 18 27 27 H 1.08996 * 109.47352 * 253.85541 * 1 2 3 28 28 H 1.09006 * 109.46880 * 13.85250 * 1 2 3 29 29 H 1.08997 * 109.47093 * 133.85037 * 1 2 3 30 30 H 1.09002 * 109.47087 * 240.00288 * 2 1 3 31 31 H 1.09003 * 109.47333 * 222.52155 * 3 2 1 32 32 H 1.09001 * 109.47370 * 342.52400 * 3 2 1 33 33 H 1.09003 * 109.46863 * 102.52218 * 3 2 1 34 34 H 1.09002 * 109.47264 * 30.00161 * 5 4 2 35 35 H 1.09000 * 109.46832 * 150.00323 * 5 4 2 36 36 H 0.96995 * 120.00227 * 179.97438 * 9 8 6 37 37 H 1.08001 * 119.63756 * 359.97268 * 17 16 14 38 38 H 1.08001 * 119.51570 * 180.02562 * 19 18 17 39 39 H 0.96998 * 120.00116 * 64.37375 * 21 20 19 40 40 H 1.09003 * 109.46841 * 64.95645 * 23 22 21 41 41 H 1.08996 * 109.47093 * 184.96352 * 23 22 21 42 42 H 1.09000 * 109.46922 * 304.96503 * 23 22 21 43 43 H 1.08003 * 120.88845 * 180.25003 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8963 -1.8558 1.0621 6 6 2.0613 -3.1080 0.9875 7 1 0.9843 -3.0426 1.0348 8 6 2.6722 -4.3374 0.8589 9 7 1.9435 -5.4303 0.7944 10 14 4.5350 -4.4507 0.7778 11 1 5.0821 -4.5999 2.1503 12 1 4.9242 -5.6270 -0.0408 13 1 5.0796 -3.2153 0.1595 14 6 1.6599 -0.2542 2.4198 15 8 2.4210 -0.3843 3.3585 16 6 0.3408 0.3829 2.6205 17 6 -0.1559 1.2938 1.6866 18 7 -1.3301 1.8631 1.8609 19 6 -2.0831 1.6030 2.9119 20 6 -1.6635 0.7073 3.8884 21 7 -2.4709 0.4399 4.9971 22 16 -1.9566 0.8554 6.5155 23 6 -1.8751 2.6673 6.4857 24 8 -3.0026 0.4173 7.3718 25 8 -0.6524 0.2989 6.6082 26 6 -0.4299 0.0809 3.7480 27 1 -0.3634 -0.2857 0.9871 28 1 -0.3633 0.9978 -0.2461 29 1 -0.3633 -0.7119 -0.7411 30 1 1.8933 -0.5138 -0.8900 31 1 2.8752 1.5326 -0.6946 32 1 1.2370 2.1118 -0.3086 33 1 2.3712 1.7107 1.0033 34 1 3.4903 -1.7604 0.1531 35 1 3.5595 -1.9122 1.9253 36 1 2.3733 -6.2951 0.7035 37 1 0.4296 1.5341 0.8114 38 1 -3.0402 2.0925 3.0150 39 1 -3.3325 0.0108 4.8774 40 1 -2.8777 3.0739 6.3534 41 1 -1.4578 3.0277 7.4260 42 1 -1.2407 2.9889 5.6597 43 1 -0.0780 -0.6229 4.4878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534314598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -6.218303 kcal Electronic energy + Delta-G solvation = -28773.539916 eV Core-core repulsion = 24755.968783 eV Total energy + Delta-G solvation = -4017.571134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.74599 -40.28912 -38.39662 -38.13846 -37.14577 -36.57974 -35.24323 -33.68293 -33.12352 -30.54548 -30.35176 -29.80302 -28.05447 -26.08639 -24.72977 -23.87541 -23.20313 -20.89748 -20.24510 -19.12916 -19.02256 -18.62954 -18.22606 -18.02977 -17.31355 -17.20491 -16.83315 -16.36845 -16.08509 -16.01143 -15.70855 -15.26451 -14.77033 -14.56889 -14.23625 -14.14066 -14.03290 -13.92840 -13.88169 -13.60146 -13.32176 -13.29510 -13.15837 -13.09048 -13.02239 -12.73767 -12.42905 -12.29691 -12.19575 -11.97740 -11.74800 -11.68874 -11.55455 -11.29247 -10.86754 -10.80173 -10.37313 -9.51793 -9.36558 -8.36536 -6.42646 -0.88213 -0.34369 0.05084 1.31920 1.36137 1.42898 1.44843 1.58953 2.11935 2.29049 2.59626 2.76748 2.97916 3.15401 3.23858 3.52444 3.67541 3.68003 3.80160 3.85700 4.01779 4.06131 4.17816 4.20103 4.33983 4.49450 4.55340 4.70961 4.78113 4.81082 4.84287 4.88970 4.91213 4.95589 5.00731 5.14557 5.34076 5.42473 5.45111 5.64180 5.97286 6.21884 6.55827 6.59967 6.70990 7.03345 7.24253 8.79750 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.003720 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.644981 B = 7524.755812 C = 8612.445872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.121 3.879 3 C -0.180 4.180 4 N -0.606 5.606 5 C 0.226 3.774 6 C -0.541 4.541 7 H 0.033 0.967 8 C 0.016 3.984 9 N -0.942 5.942 10 Si 0.943 3.057 11 H -0.279 1.279 12 H -0.274 1.274 13 H -0.235 1.235 14 C 0.569 3.431 15 O -0.574 6.574 16 C -0.213 4.213 17 C 0.145 3.855 18 N -0.492 5.492 19 C 0.144 3.856 20 C 0.054 3.946 21 N -1.045 6.045 22 S 2.603 3.397 23 C -0.641 4.641 24 O -0.985 6.985 25 O -1.001 7.001 26 C -0.041 4.041 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.018 0.982 36 H 0.269 0.731 37 H 0.225 0.775 38 H 0.214 0.786 39 H 0.436 0.564 40 H 0.167 0.833 41 H 0.149 0.851 42 H 0.139 0.861 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 23.412 1.040 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.018 3.982 3 C -0.237 4.237 4 N -0.338 5.338 5 C 0.104 3.896 6 C -0.580 4.580 7 H 0.052 0.948 8 C -0.182 4.182 9 N -0.581 5.581 10 Si 0.766 3.234 11 H -0.205 1.205 12 H -0.199 1.199 13 H -0.158 1.158 14 C 0.358 3.642 15 O -0.453 6.453 16 C -0.219 4.219 17 C -0.011 4.011 18 N -0.201 5.201 19 C -0.015 4.015 20 C -0.044 4.044 21 N -0.800 5.800 22 S 2.701 3.299 23 C -0.795 4.795 24 O -0.975 6.975 25 O -0.991 6.991 26 C -0.070 4.070 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.240 0.760 38 H 0.230 0.770 39 H 0.277 0.723 40 H 0.185 0.815 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.018 23.158 1.656 25.286 hybrid contribution 0.693 -1.864 0.731 2.119 sum -9.326 21.294 2.386 23.369 Atomic orbital electron populations 1.23715 0.95261 1.04344 1.02633 1.21510 0.94472 0.94306 0.87891 1.22720 1.04036 0.93587 1.03316 1.47782 1.50467 1.30491 1.05074 1.19434 0.89934 0.82665 0.97542 1.21595 0.93915 0.91457 1.51038 0.94835 1.25782 1.03734 0.94915 0.93807 1.70033 1.38042 0.98858 1.51203 0.85785 0.79352 0.79547 0.78736 1.20513 1.19938 1.15837 1.18431 0.85911 0.77126 0.82770 1.90693 1.53634 1.57370 1.43626 1.21023 0.97100 1.04766 0.99020 1.25217 0.93261 0.86978 0.95628 1.68048 1.05068 1.25071 1.21926 1.23906 0.99902 0.90659 0.87031 1.18000 0.91914 1.01034 0.93405 1.52864 1.30550 1.75681 1.20941 1.05038 0.72759 0.80080 0.72033 1.30237 1.14517 1.21395 1.13386 1.93586 1.57645 1.81951 1.64345 1.93634 1.42626 1.77656 1.85213 1.22085 0.94686 0.95526 0.94687 0.91607 0.86332 0.91992 0.87754 0.89046 0.86902 0.92936 0.92596 0.96360 0.92213 0.75954 0.76955 0.72319 0.81484 0.83274 0.84282 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.25 7.73 71.98 0.56 -4.69 16 2 C 0.12 3.46 3.27 44.99 0.15 3.61 16 3 C -0.18 -3.49 8.34 71.98 0.60 -2.89 16 4 N -0.61 -24.77 2.38 -805.52 -1.92 -26.69 16 5 C 0.23 10.97 4.38 85.63 0.38 11.34 16 6 C -0.54 -31.38 9.94 25.60 0.25 -31.12 16 7 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 8 C 0.02 0.95 5.47 84.66 0.46 1.41 16 9 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 10 Si 0.94 44.18 27.47 68.60 1.88 46.06 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 14 C 0.57 24.62 5.91 86.79 0.51 25.13 16 15 O -0.57 -29.80 16.78 -3.88 -0.07 -29.87 16 16 C -0.21 -7.28 4.26 -20.01 -0.09 -7.37 16 17 C 0.14 3.56 5.85 85.04 0.50 4.06 16 18 N -0.49 -9.72 10.31 -209.35 -2.16 -11.88 16 19 C 0.14 2.33 11.11 84.87 0.94 3.28 16 20 C 0.05 1.20 5.90 38.26 0.23 1.42 16 21 N -1.05 -18.10 5.64 -51.19 -0.29 -18.39 16 22 S 2.60 50.55 6.08 -56.49 -0.34 50.21 16 23 C -0.64 -5.17 10.84 113.37 1.23 -3.94 16 24 O -0.98 -24.12 18.08 -127.65 -2.31 -26.43 16 25 O -1.00 -31.85 16.07 -127.65 -2.05 -33.90 16 26 C -0.04 -1.39 8.84 22.86 0.20 -1.18 16 27 H 0.07 2.09 3.95 -12.30 -0.05 2.04 16 28 H 0.12 2.10 5.40 -2.38 -0.01 2.09 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 2.93 7.81 -2.39 -0.02 2.91 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.11 1.34 6.23 -2.39 -0.01 1.33 16 33 H 0.05 1.22 6.78 -2.39 -0.02 1.20 16 34 H 0.06 2.45 7.00 -2.39 -0.02 2.43 16 35 H 0.02 0.97 6.78 -2.39 -0.02 0.95 16 36 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 37 H 0.23 4.56 1.07 -4.29 0.00 4.56 16 38 H 0.21 1.26 8.06 -2.91 -0.02 1.23 16 39 H 0.44 5.44 8.92 -96.75 -0.86 4.58 16 40 H 0.17 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.14 1.04 8.14 -2.39 -0.02 1.03 16 43 H 0.12 4.90 7.08 -2.91 -0.02 4.88 16 Total: -1.00 -92.58 355.52 -0.91 -93.49 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.12 Total: 17.03 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.92 Total: -0.94 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -4.07 Total: -115.67 kcal Atomic # 8 Polarization: -85.77 SS G_CDS: -4.42 Total: -90.19 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Atomic # 16 Polarization: 50.55 SS G_CDS: -0.34 Total: 50.21 kcal Total: -92.58 -0.91 -93.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534314598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.274 kcal (2) G-P(sol) polarization free energy of solvation -92.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds