Wall clock time and date at job start Sat Apr 11 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47380 * 2 1 4 4 H 1.08992 * 109.47417 * 175.22635 * 3 2 1 5 5 C 1.50701 * 109.46909 * 55.22121 * 3 2 1 6 6 H 1.08003 * 120.00463 * 245.72360 * 5 3 2 7 7 C 1.37883 * 119.99555 * 65.72774 * 5 3 2 8 8 N 1.31510 * 120.00124 * 5.51508 * 7 5 3 9 9 Si 1.86803 * 119.99690 * 185.51233 * 7 5 3 10 10 H 1.48505 * 109.47172 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47451 * 300.00235 * 9 7 5 12 12 H 1.48499 * 109.47176 * 60.00105 * 9 7 5 13 13 N 1.46901 * 109.47324 * 295.22619 * 3 2 1 14 14 C 1.46896 * 110.99922 * 279.79729 * 13 3 2 15 15 C 1.50703 * 109.47407 * 184.95352 * 14 13 3 16 16 O 1.21285 * 119.99613 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00173 * 180.02562 * 15 14 13 18 18 C 1.39001 * 119.99713 * 180.02562 * 17 15 14 19 19 N 1.29625 * 124.94202 * 179.71884 * 18 17 15 20 20 C 1.31993 * 116.91758 * 179.80804 * 19 18 17 21 21 C 1.50697 * 122.71523 * 180.22342 * 20 19 18 22 22 C 1.50698 * 109.47268 * 305.27063 * 21 20 19 23 23 O 1.20819 * 120.00271 * 359.97438 * 22 21 20 24 24 O 1.34234 * 119.99909 * 179.97438 * 22 21 20 25 25 C 1.45194 * 117.00197 * 179.97438 * 24 22 21 26 26 C 1.33441 * 114.56657 * 0.47635 * 20 19 18 27 27 S 1.70967 * 124.94666 * 0.02562 * 18 17 15 28 28 H 1.08995 * 109.46850 * 304.94498 * 1 2 3 29 29 H 1.08995 * 109.47354 * 64.94589 * 1 2 3 30 30 H 1.09007 * 109.46933 * 184.94980 * 1 2 3 31 31 H 1.08999 * 109.46631 * 239.99865 * 2 1 3 32 32 H 1.09002 * 109.47257 * 120.00344 * 2 1 3 33 33 H 0.96997 * 119.99995 * 355.15403 * 8 7 5 34 34 H 1.00897 * 111.00065 * 155.83926 * 13 3 2 35 35 H 1.09009 * 109.46898 * 304.94878 * 14 13 3 36 36 H 1.08996 * 109.47797 * 64.95086 * 14 13 3 37 37 H 0.96996 * 120.00048 * 359.97438 * 17 15 14 38 38 H 1.08996 * 109.46992 * 65.27029 * 21 20 19 39 39 H 1.09002 * 109.47139 * 185.27208 * 21 20 19 40 40 H 1.09006 * 109.47380 * 300.00521 * 25 24 22 41 41 H 1.09007 * 109.47077 * 59.99532 * 25 24 22 42 42 H 1.08996 * 109.47480 * 180.02562 * 25 24 22 43 43 H 1.08004 * 125.96858 * 179.71687 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1266 1.4436 0.0855 5 6 1.4434 2.1861 1.1670 6 1 0.7592 3.0036 0.9937 7 6 1.7712 1.8230 2.4562 8 7 2.6854 0.9016 2.6675 9 14 0.9167 2.6401 3.9025 10 1 1.4439 2.0769 5.1714 11 1 1.1711 4.1026 3.8660 12 1 -0.5447 2.3897 3.8198 13 7 1.6468 2.1009 -1.2529 14 6 2.5539 1.7329 -2.3482 15 6 2.1947 2.5183 -3.5833 16 8 1.2735 3.3065 -3.5540 17 7 2.8966 2.3439 -4.7205 18 6 2.5656 3.0687 -5.8595 19 7 3.1771 2.9810 -6.9991 20 6 2.7267 3.7419 -7.9790 21 6 3.3361 3.7406 -9.3572 22 6 4.8130 4.0217 -9.2537 23 8 5.3188 4.2049 -8.1719 24 8 5.5667 4.0686 -10.3635 25 6 6.9814 4.3447 -10.1885 26 6 1.6914 4.5165 -7.6490 27 16 1.2974 4.2110 -5.9592 28 1 -0.3633 0.5886 0.8424 29 1 -0.3634 0.4352 -0.9309 30 1 -0.3633 -1.0239 0.0887 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.0785 0.4276 1.9181 34 1 1.6065 3.1025 -1.1378 35 1 3.5810 1.9579 -2.0605 36 1 2.4599 0.6670 -2.5554 37 1 3.6331 1.7132 -4.7440 38 1 3.1834 2.7661 -9.8210 39 1 2.8615 4.5108 -9.9652 40 1 7.1055 5.3157 -9.7089 41 1 7.4280 3.5712 -9.5635 42 1 7.4727 4.3550 -11.1613 43 1 1.1840 5.2100 -8.3033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580581873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:30 Heat of formation + Delta-G solvation = -92.071207 kcal Electronic energy + Delta-G solvation = -26483.754153 eV Core-core repulsion = 22462.460159 eV Total energy + Delta-G solvation = -4021.293995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.83254 -41.43873 -40.37521 -38.29194 -37.48461 -36.21982 -34.70326 -32.99097 -32.54309 -30.00016 -29.02605 -28.05461 -26.78023 -25.49651 -24.84920 -22.70424 -22.49779 -21.26319 -20.71728 -19.42498 -19.08988 -18.68623 -18.01925 -17.81644 -17.58642 -17.29509 -17.04787 -16.23618 -16.14824 -15.70439 -15.49776 -15.17781 -15.10288 -14.79451 -14.57327 -14.33034 -14.12282 -13.85325 -13.68465 -13.52511 -13.27652 -13.11066 -12.94973 -12.60238 -12.54040 -12.03304 -12.01875 -11.95405 -11.83355 -11.79938 -11.60331 -11.54620 -11.11306 -10.78252 -10.58884 -10.39521 -10.24087 -9.35763 -9.21646 -8.54207 -6.26423 -0.31770 0.11994 0.84976 1.06965 1.21810 1.40079 1.56220 1.62364 1.62763 1.81282 2.10722 2.58293 3.20053 3.24116 3.46159 3.52972 3.92501 4.05087 4.22557 4.27080 4.28893 4.30630 4.33884 4.45374 4.52002 4.55985 4.60691 4.69214 4.73507 4.74543 5.00865 5.09716 5.19409 5.37694 5.40131 5.48234 5.72158 5.74521 5.89541 6.07923 6.45679 6.54176 6.64618 6.71724 6.76268 6.76819 7.50240 8.83619 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.002035 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.397029 B =13754.598652 C =14130.992127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.104 4.104 3 C 0.209 3.791 4 H -0.028 1.028 5 C -0.595 4.595 6 H 0.046 0.954 7 C -0.022 4.022 8 N -0.936 5.936 9 Si 1.107 2.893 10 H -0.287 1.287 11 H -0.276 1.276 12 H -0.274 1.274 13 N -0.665 5.665 14 C 0.051 3.949 15 C 0.521 3.479 16 O -0.515 6.515 17 N -0.618 5.618 18 C 0.227 3.773 19 N -0.512 5.512 20 C 0.072 3.928 21 C -0.028 4.028 22 C 0.460 3.540 23 O -0.533 6.533 24 O -0.361 6.361 25 C 0.030 3.970 26 C -0.291 4.291 27 S 0.226 5.774 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.339 0.661 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.433 0.567 38 H 0.143 0.857 39 H 0.164 0.836 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.134 0.866 43 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 5.168 -29.048 29.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.143 4.143 3 C 0.100 3.900 4 H -0.010 1.010 5 C -0.633 4.633 6 H 0.065 0.935 7 C -0.221 4.221 8 N -0.574 5.574 9 Si 0.931 3.069 10 H -0.213 1.213 11 H -0.201 1.201 12 H -0.199 1.199 13 N -0.298 5.298 14 C -0.081 4.081 15 C 0.308 3.692 16 O -0.389 6.389 17 N -0.269 5.269 18 C -0.140 4.140 19 N -0.235 5.235 20 C -0.060 4.060 21 C -0.067 4.067 22 C 0.303 3.697 23 O -0.421 6.421 24 O -0.278 6.278 25 C -0.063 4.063 26 C -0.431 4.431 27 S 0.476 5.524 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.157 0.843 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.274 0.726 38 H 0.161 0.839 39 H 0.182 0.818 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.152 0.848 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.234 5.348 -26.428 26.991 hybrid contribution 2.232 -0.104 -1.754 2.841 sum 3.467 5.244 -28.181 28.874 Atomic orbital electron populations 1.21354 0.95498 0.98917 1.01253 1.21454 0.97211 0.97060 0.98531 1.19165 0.91732 0.92559 0.86500 1.01021 1.22149 1.30011 1.18466 0.92721 0.93538 1.26897 0.95470 0.96937 1.02829 1.70909 1.25660 1.25389 1.35447 0.83033 0.75539 0.75413 0.72960 1.21258 1.20125 1.19935 1.60362 1.50297 1.14104 1.04993 1.21855 0.96806 1.01022 0.88444 1.21310 0.81078 0.82587 0.84177 1.90630 1.29229 1.36156 1.82853 1.42813 1.35675 1.41699 1.06710 1.23555 0.99488 1.00143 0.90806 1.66046 1.30572 1.28058 0.98845 1.19496 0.95763 0.95623 0.95153 1.20026 0.85871 1.08895 0.91941 1.24041 0.91236 0.72538 0.81851 1.90718 1.75053 1.45869 1.30478 1.86480 1.23393 1.82038 1.35864 1.23476 0.76470 1.01093 1.05243 1.27587 1.05156 1.08761 1.01632 1.85194 1.28717 1.33746 1.04726 0.94317 0.92997 0.94106 0.93477 0.94522 0.92659 0.84272 0.91033 0.86082 0.72649 0.83904 0.81844 0.92417 0.92745 0.84787 0.76803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.53 71.98 0.69 -4.09 16 2 C -0.10 -4.59 5.47 30.59 0.17 -4.42 16 3 C 0.21 9.87 1.92 44.17 0.08 9.95 16 4 H -0.03 -1.41 7.31 -2.39 -0.02 -1.43 16 5 C -0.60 -31.84 6.92 25.60 0.18 -31.67 16 6 H 0.05 2.54 7.75 -2.91 -0.02 2.51 16 7 C -0.02 -1.21 5.29 84.66 0.45 -0.76 16 8 N -0.94 -54.65 13.20 21.45 0.28 -54.37 16 9 Si 1.11 49.66 29.91 68.60 2.05 51.71 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 13 N -0.67 -26.88 5.54 -499.48 -2.77 -29.65 16 14 C 0.05 1.57 5.99 85.56 0.51 2.09 16 15 C 0.52 15.64 7.82 87.66 0.69 16.33 16 16 O -0.51 -18.29 13.56 -3.04 -0.04 -18.33 16 17 N -0.62 -15.91 5.40 -313.65 -1.69 -17.60 16 18 C 0.23 6.29 8.19 179.20 1.47 7.76 16 19 N -0.51 -13.76 9.72 -189.59 -1.84 -15.60 16 20 C 0.07 1.48 5.64 41.45 0.23 1.72 16 21 C -0.03 -0.35 6.30 29.10 0.18 -0.17 16 22 C 0.46 8.93 7.92 71.24 0.56 9.49 16 23 O -0.53 -15.24 15.19 21.98 0.33 -14.91 16 24 O -0.36 -5.65 10.57 -51.45 -0.54 -6.19 16 25 C 0.03 0.37 10.56 113.37 1.20 1.56 16 26 C -0.29 -5.23 11.05 66.73 0.74 -4.49 16 27 S 0.23 5.67 20.22 -56.49 -1.14 4.53 16 28 H 0.04 1.82 6.89 -2.39 -0.02 1.80 16 29 H 0.05 2.11 7.89 -2.39 -0.02 2.09 16 30 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.05 1.80 7.13 -2.39 -0.02 1.78 16 32 H 0.04 1.79 6.18 -2.39 -0.01 1.78 16 33 H 0.26 15.26 5.62 -92.71 -0.52 14.73 16 34 H 0.34 14.55 7.88 -89.70 -0.71 13.84 16 35 H 0.07 2.09 7.95 -2.38 -0.02 2.07 16 36 H 0.12 3.29 7.20 -2.39 -0.02 3.27 16 37 H 0.43 8.96 8.82 -92.71 -0.82 8.14 16 38 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.16 0.66 8.03 -2.39 -0.02 0.64 16 40 H 0.06 0.75 8.13 -2.38 -0.02 0.73 16 41 H 0.05 0.75 8.13 -2.38 -0.02 0.74 16 42 H 0.13 0.66 8.14 -2.39 -0.02 0.65 16 43 H 0.22 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -74.87 374.62 1.57 -73.29 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.21 Total: 23.81 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 7.14 Total: 3.30 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -6.02 Total: -117.22 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.25 Total: -39.43 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.71 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -1.14 Total: 4.53 kcal Total: -74.87 1.57 -73.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580581873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.779 kcal (2) G-P(sol) polarization free energy of solvation -74.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds