Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47385 * 2 1 4 4 H 1.09005 * 109.46647 * 54.36682 * 3 2 1 5 5 C 1.50700 * 109.47334 * 174.35992 * 3 2 1 6 6 H 1.08003 * 119.99735 * 119.99958 * 5 3 2 7 7 C 1.37872 * 120.00289 * 300.00878 * 5 3 2 8 8 N 1.31515 * 120.00091 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00069 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46868 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47017 * 119.99673 * 9 7 5 12 12 H 1.48501 * 109.47156 * 239.99766 * 9 7 5 13 13 N 1.46891 * 109.47433 * 294.36954 * 3 2 1 14 14 C 1.46898 * 111.00405 * 152.94263 * 13 3 2 15 15 C 1.50698 * 109.47385 * 174.67231 * 14 13 3 16 16 O 1.21280 * 120.00094 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00103 * 179.97438 * 15 14 13 18 18 C 1.39001 * 119.99967 * 179.72504 * 17 15 14 19 19 N 1.29625 * 124.94454 * 179.97438 * 18 17 15 20 20 C 1.31987 * 116.91523 * 179.77720 * 19 18 17 21 21 C 1.50702 * 122.71276 * 180.24390 * 20 19 18 22 22 C 1.50701 * 109.47178 * 305.29313 * 21 20 19 23 23 O 1.20816 * 120.00157 * 359.97438 * 22 21 20 24 24 O 1.34228 * 119.99869 * 180.02562 * 22 21 20 25 25 C 1.45199 * 117.00140 * 179.97438 * 24 22 21 26 26 C 1.33443 * 114.56939 * 0.51011 * 20 19 18 27 27 S 1.70967 * 124.94429 * 0.30618 * 18 17 15 28 28 H 1.08997 * 109.47395 * 179.31514 * 1 2 3 29 29 H 1.09004 * 109.46758 * 299.30979 * 1 2 3 30 30 H 1.08993 * 109.47418 * 59.30822 * 1 2 3 31 31 H 1.09003 * 109.46968 * 240.00318 * 2 1 3 32 32 H 1.08996 * 109.47454 * 120.00701 * 2 1 3 33 33 H 0.97000 * 119.99946 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99952 * 28.98538 * 13 3 2 35 35 H 1.09000 * 109.47157 * 54.67516 * 14 13 3 36 36 H 1.08995 * 109.46962 * 294.67449 * 14 13 3 37 37 H 0.96999 * 119.99753 * 0.02562 * 17 15 14 38 38 H 1.09005 * 109.46922 * 65.29115 * 21 20 19 39 39 H 1.09003 * 109.47324 * 185.28847 * 21 20 19 40 40 H 1.08999 * 109.47398 * 179.97438 * 25 24 22 41 41 H 1.08994 * 109.47216 * 300.00285 * 25 24 22 42 42 H 1.09003 * 109.46606 * 60.00379 * 25 24 22 43 43 H 1.08000 * 125.96316 * 179.73347 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9846 0.8353 5 6 3.5406 1.4447 0.1396 6 1 4.1540 1.8864 -0.6318 7 6 4.1303 0.8828 1.2520 8 7 3.3834 0.3453 2.1915 9 14 5.9903 0.8851 1.4247 10 1 6.5966 1.5450 0.2405 11 1 6.3724 1.6252 2.6541 12 1 6.4806 -0.5137 1.5164 13 7 1.6646 2.0947 -1.2615 14 6 1.5365 3.5474 -1.0854 15 6 1.2802 4.1948 -2.4219 16 8 1.2106 3.5131 -3.4225 17 7 1.1274 5.5314 -2.5050 18 6 0.8967 6.1291 -3.7386 19 7 0.7357 7.4012 -3.9287 20 6 0.5299 7.7983 -5.1704 21 6 0.3319 9.2458 -5.5403 22 6 -0.7949 9.8235 -4.7232 23 8 -1.3777 9.1309 -3.9230 24 8 -1.1517 11.1073 -4.8852 25 6 -2.2456 11.5960 -4.0651 26 6 0.5057 6.8139 -6.0711 27 16 0.7761 5.2927 -5.2248 28 1 -0.3634 -1.0275 -0.0123 29 1 -0.3633 0.5031 0.8962 30 1 -0.3634 0.5245 -0.8836 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.7983 -0.0497 2.9743 34 1 0.8143 1.6992 -1.6339 35 1 2.4582 3.9445 -0.6601 36 1 0.7052 3.7600 -0.4133 37 1 1.1827 6.0765 -1.7046 38 1 1.2483 9.8008 -5.3392 39 1 0.0875 9.3199 -6.6000 40 1 -2.4312 12.6453 -4.2944 41 1 -3.1435 11.0141 -4.2727 42 1 -1.9831 11.4956 -3.0119 43 1 0.3476 6.9297 -7.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580581875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -64.898438 kcal Electronic energy + Delta-G solvation = -26447.249196 eV Core-core repulsion = 22427.133501 eV Total energy + Delta-G solvation = -4020.115695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88380 -40.28135 -39.30880 -36.66311 -36.29121 -34.98667 -32.63578 -32.02194 -31.20256 -29.04900 -27.54877 -27.35184 -25.78906 -23.96816 -22.65378 -21.66313 -21.33149 -19.81058 -19.56054 -18.23441 -17.85456 -17.08589 -16.85412 -16.72765 -16.41338 -16.18371 -15.79441 -14.96214 -14.77943 -14.54473 -14.19443 -13.93336 -13.80780 -13.64099 -13.39008 -13.18668 -12.69304 -12.54704 -12.33603 -12.29721 -12.22858 -11.55652 -11.47842 -11.20432 -11.06276 -10.94127 -10.90535 -10.64530 -10.64213 -10.08948 -10.01965 -9.72480 -9.70692 -9.61693 -9.17999 -9.17704 -8.41163 -8.30029 -7.40212 -6.03376 -4.08090 0.71868 1.15797 1.81591 2.02534 2.17361 2.56167 2.61201 3.04326 3.28233 3.36884 3.42127 4.11418 4.40121 4.63611 4.71051 4.80593 4.84094 4.88461 5.01208 5.15568 5.16739 5.22246 5.28102 5.42587 5.67204 5.70395 5.89038 6.09440 6.12562 6.14259 6.18476 6.36988 6.78072 6.87702 6.97157 7.07207 7.34899 7.55128 7.70640 7.74937 7.84032 7.90772 8.12779 8.30134 8.60877 9.00162 9.57581 11.01905 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002147 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.073910 B =13035.479618 C =13203.736674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.006 0.994 5 C -0.497 4.497 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.670 5.670 14 C 0.060 3.940 15 C 0.512 3.488 16 O -0.487 6.487 17 N -0.629 5.629 18 C 0.256 3.744 19 N -0.502 5.502 20 C 0.095 3.905 21 C -0.032 4.032 22 C 0.460 3.540 23 O -0.484 6.484 24 O -0.365 6.365 25 C 0.037 3.963 26 C -0.321 4.321 27 S 0.255 5.745 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.044 0.956 32 H 0.102 0.898 33 H 0.260 0.740 34 H 0.329 0.671 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.424 0.576 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.155 18.732 -14.311 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.024 0.976 5 C -0.535 4.535 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.303 5.303 14 C -0.073 4.073 15 C 0.300 3.700 16 O -0.359 6.359 17 N -0.281 5.281 18 C -0.112 4.112 19 N -0.224 5.224 20 C -0.039 4.039 21 C -0.072 4.072 22 C 0.301 3.699 23 O -0.368 6.368 24 O -0.282 6.282 25 C -0.057 4.057 26 C -0.462 4.462 27 S 0.506 5.494 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.074 0.926 37 H 0.262 0.738 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.628 17.130 -14.534 24.065 hybrid contribution -0.108 1.379 1.134 1.788 sum -8.736 18.508 -13.400 24.463 Atomic orbital electron populations 1.21897 0.99508 0.99832 0.99688 1.21777 0.91311 0.99979 1.03385 1.19224 0.95784 0.90245 0.83438 0.97618 1.21243 0.91066 1.36928 1.04307 0.91854 1.24960 0.98230 0.95482 0.95808 1.69874 1.34701 1.39328 1.09544 0.86479 0.85606 0.77712 0.77850 1.19746 1.21212 1.21072 1.60420 1.38581 0.98770 1.32535 1.21685 1.03062 0.93122 0.89475 1.21850 0.74748 0.79624 0.93812 1.90602 1.47024 1.60999 1.37265 1.43180 1.69624 1.08568 1.06688 1.23427 1.02074 0.91935 0.93732 1.66022 1.21278 1.12401 1.22733 1.18886 1.02913 0.95133 0.86966 1.19787 0.96881 0.90270 1.00264 1.23476 0.84197 0.80082 0.82149 1.90725 1.52279 1.60180 1.33664 1.86478 1.51168 1.28776 1.61790 1.23236 0.87733 0.99724 0.94984 1.27213 1.15624 0.98012 1.05334 1.85104 1.65005 1.04427 0.94882 0.94206 0.93816 0.94576 0.93766 0.87981 0.93027 0.85262 0.86768 0.92602 0.73784 0.86120 0.86040 0.88155 0.91993 0.91860 0.80771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.77 37.16 0.36 -2.49 16 2 C -0.13 -2.87 5.35 -26.73 -0.14 -3.02 16 3 C 0.22 5.18 2.02 -68.87 -0.14 5.04 16 4 H 0.01 0.16 7.83 -51.93 -0.41 -0.25 16 5 C -0.50 -13.14 8.64 -34.44 -0.30 -13.44 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.89 -24.57 11.29 55.43 0.63 -23.95 16 9 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.67 -13.70 5.83 -109.23 -0.64 -14.34 16 14 C 0.06 1.00 5.93 -4.98 -0.03 0.97 16 15 C 0.51 8.15 7.84 -10.98 -0.09 8.06 16 16 O -0.49 -8.89 13.79 5.56 0.08 -8.81 16 17 N -0.63 -8.69 5.40 -13.07 -0.07 -8.76 16 18 C 0.26 3.75 8.19 -87.35 -0.72 3.04 16 19 N -0.50 -7.26 9.71 -11.28 -0.11 -7.37 16 20 C 0.09 1.13 5.64 -84.20 -0.47 0.65 16 21 C -0.03 -0.26 6.30 -29.03 -0.18 -0.45 16 22 C 0.46 5.00 7.92 36.01 0.29 5.29 16 23 O -0.48 -7.13 15.18 -18.74 -0.28 -7.41 16 24 O -0.36 -3.32 10.56 -39.25 -0.41 -3.73 16 25 C 0.04 0.26 10.56 101.05 1.07 1.32 16 26 C -0.32 -3.44 11.05 29.06 0.32 -3.12 16 27 S 0.25 3.41 20.22 -107.50 -2.17 1.23 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.62 6.45 -51.93 -0.33 0.28 16 31 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 2.61 5.94 -51.93 -0.31 2.31 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.33 6.40 6.39 -39.29 -0.25 6.15 16 35 H 0.11 1.94 7.99 -51.93 -0.42 1.52 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.42 4.84 8.82 -40.82 -0.36 4.48 16 38 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.12 0.58 8.03 -51.93 -0.42 0.17 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 42 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 43 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -33.10 378.10 -8.28 -41.38 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.84 Total: 6.86 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.13 Total: 3.26 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.19 Total: -54.40 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.62 Total: -19.96 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -2.17 Total: 1.23 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.10 -8.28 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580581875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.521 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds