Wall clock time and date at job start Sat Apr 11 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47385 * 2 1 4 4 H 1.09005 * 109.46647 * 54.36682 * 3 2 1 5 5 C 1.50700 * 109.47334 * 174.35992 * 3 2 1 6 6 H 1.08003 * 119.99735 * 119.99958 * 5 3 2 7 7 C 1.37872 * 120.00289 * 300.00878 * 5 3 2 8 8 N 1.31515 * 120.00091 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00069 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46868 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47017 * 119.99673 * 9 7 5 12 12 H 1.48501 * 109.47156 * 239.99766 * 9 7 5 13 13 N 1.46891 * 109.47433 * 294.36954 * 3 2 1 14 14 C 1.46898 * 111.00405 * 152.94263 * 13 3 2 15 15 C 1.50698 * 109.47385 * 174.67231 * 14 13 3 16 16 O 1.21280 * 120.00094 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00103 * 179.97438 * 15 14 13 18 18 C 1.39001 * 119.99967 * 179.72504 * 17 15 14 19 19 N 1.29625 * 124.94454 * 179.97438 * 18 17 15 20 20 C 1.31987 * 116.91523 * 179.77720 * 19 18 17 21 21 C 1.50702 * 122.71276 * 180.24390 * 20 19 18 22 22 C 1.50701 * 109.47178 * 305.29313 * 21 20 19 23 23 O 1.20816 * 120.00157 * 359.97438 * 22 21 20 24 24 O 1.34228 * 119.99869 * 180.02562 * 22 21 20 25 25 C 1.45199 * 117.00140 * 179.97438 * 24 22 21 26 26 C 1.33443 * 114.56939 * 0.51011 * 20 19 18 27 27 S 1.70967 * 124.94429 * 0.30618 * 18 17 15 28 28 H 1.08997 * 109.47395 * 179.31514 * 1 2 3 29 29 H 1.09004 * 109.46758 * 299.30979 * 1 2 3 30 30 H 1.08993 * 109.47418 * 59.30822 * 1 2 3 31 31 H 1.09003 * 109.46968 * 240.00318 * 2 1 3 32 32 H 1.08996 * 109.47454 * 120.00701 * 2 1 3 33 33 H 0.97000 * 119.99946 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99952 * 28.98538 * 13 3 2 35 35 H 1.09000 * 109.47157 * 54.67516 * 14 13 3 36 36 H 1.08995 * 109.46962 * 294.67449 * 14 13 3 37 37 H 0.96999 * 119.99753 * 0.02562 * 17 15 14 38 38 H 1.09005 * 109.46922 * 65.29115 * 21 20 19 39 39 H 1.09003 * 109.47324 * 185.28847 * 21 20 19 40 40 H 1.08999 * 109.47398 * 179.97438 * 25 24 22 41 41 H 1.08994 * 109.47216 * 300.00285 * 25 24 22 42 42 H 1.09003 * 109.46606 * 60.00379 * 25 24 22 43 43 H 1.08000 * 125.96316 * 179.73347 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9846 0.8353 5 6 3.5406 1.4447 0.1396 6 1 4.1540 1.8864 -0.6318 7 6 4.1303 0.8828 1.2520 8 7 3.3834 0.3453 2.1915 9 14 5.9903 0.8851 1.4247 10 1 6.5966 1.5450 0.2405 11 1 6.3724 1.6252 2.6541 12 1 6.4806 -0.5137 1.5164 13 7 1.6646 2.0947 -1.2615 14 6 1.5365 3.5474 -1.0854 15 6 1.2802 4.1948 -2.4219 16 8 1.2106 3.5131 -3.4225 17 7 1.1274 5.5314 -2.5050 18 6 0.8967 6.1291 -3.7386 19 7 0.7357 7.4012 -3.9287 20 6 0.5299 7.7983 -5.1704 21 6 0.3319 9.2458 -5.5403 22 6 -0.7949 9.8235 -4.7232 23 8 -1.3777 9.1309 -3.9230 24 8 -1.1517 11.1073 -4.8852 25 6 -2.2456 11.5960 -4.0651 26 6 0.5057 6.8139 -6.0711 27 16 0.7761 5.2927 -5.2248 28 1 -0.3634 -1.0275 -0.0123 29 1 -0.3633 0.5031 0.8962 30 1 -0.3634 0.5245 -0.8836 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.7983 -0.0497 2.9743 34 1 0.8143 1.6992 -1.6339 35 1 2.4582 3.9445 -0.6601 36 1 0.7052 3.7600 -0.4133 37 1 1.1827 6.0765 -1.7046 38 1 1.2483 9.8008 -5.3392 39 1 0.0875 9.3199 -6.6000 40 1 -2.4312 12.6453 -4.2944 41 1 -3.1435 11.0141 -4.2727 42 1 -1.9831 11.4956 -3.0119 43 1 0.3476 6.9297 -7.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580581875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:33 Heat of formation + Delta-G solvation = -87.797595 kcal Electronic energy + Delta-G solvation = -26448.242178 eV Core-core repulsion = 22427.133501 eV Total energy + Delta-G solvation = -4021.108677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78278 -41.36922 -40.32165 -38.02445 -37.45656 -36.13297 -34.46594 -33.13889 -32.67333 -29.93500 -29.11436 -28.03464 -27.39365 -25.20919 -24.28322 -22.54951 -22.45308 -21.52772 -20.65210 -19.27596 -18.67359 -18.40988 -18.06604 -17.85558 -17.56417 -17.18264 -16.99385 -16.64941 -16.30856 -15.71466 -15.44174 -15.08510 -15.00152 -14.58195 -14.41018 -14.28029 -14.09341 -13.91104 -13.69764 -13.29366 -13.13761 -13.01246 -12.92942 -12.77698 -12.53316 -12.46841 -11.98875 -11.97114 -11.78001 -11.70600 -11.51700 -11.50433 -11.08434 -10.96466 -10.74157 -10.42451 -10.20240 -9.29888 -9.07465 -8.06557 -6.17952 -0.27335 0.16081 0.89235 1.13831 1.23935 1.41243 1.44898 1.48179 1.55801 1.66643 2.13900 2.44999 3.18859 3.25407 3.57831 3.67958 3.95269 4.07688 4.30721 4.32317 4.33157 4.36428 4.47570 4.54320 4.55196 4.57512 4.63250 4.71162 4.72570 4.79154 5.09198 5.14023 5.20605 5.34929 5.42051 5.54418 5.74233 5.83603 5.87816 6.32094 6.43112 6.71425 6.76562 6.78682 6.88507 6.94635 7.51007 8.96645 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002147 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.073910 B =13035.479618 C =13203.736674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.227 3.773 4 H -0.013 1.013 5 C -0.511 4.511 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.679 5.679 14 C 0.061 3.939 15 C 0.521 3.479 16 O -0.514 6.514 17 N -0.620 5.620 18 C 0.229 3.771 19 N -0.514 5.514 20 C 0.072 3.928 21 C -0.028 4.028 22 C 0.460 3.540 23 O -0.532 6.532 24 O -0.362 6.362 25 C 0.030 3.970 26 C -0.293 4.293 27 S 0.227 5.773 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.261 0.739 34 H 0.334 0.666 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.432 0.568 38 H 0.142 0.858 39 H 0.164 0.836 40 H 0.134 0.866 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 20.566 -16.111 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.119 3.881 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.312 5.312 14 C -0.072 4.072 15 C 0.309 3.691 16 O -0.387 6.387 17 N -0.271 5.271 18 C -0.139 4.139 19 N -0.237 5.237 20 C -0.060 4.060 21 C -0.068 4.068 22 C 0.304 3.696 23 O -0.420 6.420 24 O -0.278 6.278 25 C -0.063 4.063 26 C -0.433 4.433 27 S 0.477 5.523 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.272 0.728 38 H 0.159 0.841 39 H 0.182 0.818 40 H 0.152 0.848 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.889 19.030 -16.351 26.618 hybrid contribution -0.085 0.953 1.609 1.872 sum -8.974 19.983 -14.742 26.404 Atomic orbital electron populations 1.21764 0.96299 1.01312 1.00446 1.21617 0.94205 0.98958 1.01346 1.18981 0.94246 0.90788 0.84054 0.99573 1.21473 0.92682 1.36830 1.04020 0.93219 1.25616 1.01961 0.95313 0.95663 1.69985 1.36049 1.39792 1.09840 0.85587 0.81141 0.77586 0.77752 1.19763 1.20595 1.20913 1.60236 1.39265 1.00774 1.30943 1.21651 1.03784 0.91074 0.90652 1.21453 0.74621 0.80182 0.92887 1.90600 1.48449 1.61876 1.37819 1.42883 1.69081 1.07892 1.07258 1.23573 1.03952 0.92358 0.93977 1.66049 1.20847 1.12340 1.24491 1.19492 1.03134 0.97192 0.86228 1.20024 0.96766 0.87942 1.02030 1.24019 0.84044 0.80167 0.81404 1.90713 1.54140 1.61306 1.35854 1.86480 1.51604 1.27897 1.61836 1.23475 0.86934 1.01508 0.94363 1.27578 1.13092 0.95754 1.06880 1.85141 1.65269 1.06582 0.95295 0.92419 0.93893 0.92868 0.94742 0.90940 0.93008 0.84628 0.87245 0.90380 0.72751 0.84057 0.81844 0.84826 0.92333 0.92768 0.76815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.77 71.98 0.70 -4.46 16 2 C -0.12 -5.66 5.35 30.59 0.16 -5.49 16 3 C 0.23 10.87 2.02 44.17 0.09 10.96 16 4 H -0.01 -0.68 7.83 -2.38 -0.02 -0.70 16 5 C -0.51 -27.54 8.64 25.60 0.22 -27.32 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 7 C 0.01 0.70 5.29 84.65 0.45 1.15 16 8 N -0.92 -51.07 11.29 21.45 0.24 -50.83 16 9 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 N -0.68 -27.95 5.83 -499.49 -2.91 -30.86 16 14 C 0.06 2.05 5.93 85.56 0.51 2.56 16 15 C 0.52 16.63 7.84 87.66 0.69 17.32 16 16 O -0.51 -18.87 13.79 -3.03 -0.04 -18.91 16 17 N -0.62 -17.12 5.40 -313.65 -1.69 -18.82 16 18 C 0.23 6.62 8.19 179.20 1.47 8.09 16 19 N -0.51 -14.42 9.71 -189.59 -1.84 -16.26 16 20 C 0.07 1.55 5.64 41.45 0.23 1.78 16 21 C -0.03 -0.38 6.30 29.10 0.18 -0.19 16 22 C 0.46 9.19 7.92 71.24 0.56 9.75 16 23 O -0.53 -15.41 15.18 21.99 0.33 -15.07 16 24 O -0.36 -5.82 10.56 -51.39 -0.54 -6.36 16 25 C 0.03 0.38 10.56 113.37 1.20 1.57 16 26 C -0.29 -5.48 11.05 66.73 0.74 -4.74 16 27 S 0.23 5.88 20.22 -56.49 -1.14 4.74 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.05 1.76 6.45 -2.39 -0.02 1.74 16 31 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 3.79 5.94 -2.39 -0.01 3.78 16 33 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 34 H 0.33 12.95 6.39 -89.69 -0.57 12.38 16 35 H 0.11 3.78 7.99 -2.39 -0.02 3.76 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.43 9.91 8.82 -92.71 -0.82 9.09 16 38 H 0.14 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.16 0.77 8.03 -2.39 -0.02 0.75 16 40 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 0.76 8.13 -2.39 -0.02 0.75 16 42 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 43 H 0.22 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -73.16 378.10 1.30 -71.86 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.33 Total: 24.11 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 7.20 Total: 10.97 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -6.21 Total: -116.76 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.25 Total: -40.34 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -1.14 Total: 4.74 kcal Total: -73.16 1.30 -71.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580581875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.940 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds