Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00372 * 2 1 4 4 O 1.20826 * 119.99792 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00139 * 180.02562 * 3 2 1 6 6 C 1.50696 * 109.47057 * 179.97438 * 5 3 2 7 7 C 1.33417 * 122.71570 * 124.94653 * 6 5 3 8 8 S 1.76172 * 108.06652 * 180.02562 * 7 6 5 9 9 C 1.70968 * 90.34489 * 0.02562 * 8 7 6 10 10 N 1.39006 * 124.94258 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00092 * 0.03053 * 10 9 8 12 12 O 1.21578 * 120.00028 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99605 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99662 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47153 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47150 * 300.00480 * 15 14 13 17 17 C 1.53002 * 109.46553 * 60.00253 * 15 14 13 18 18 C 1.50697 * 109.46908 * 180.02562 * 15 14 13 19 19 H 1.08000 * 120.00410 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99508 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00313 * 0.02562 * 20 18 15 22 22 Si 1.86809 * 119.99773 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47017 * 89.99920 * 22 20 18 24 24 H 1.48500 * 109.46901 * 210.00087 * 22 20 18 25 25 H 1.48494 * 109.46985 * 329.99776 * 22 20 18 26 26 N 1.29623 * 110.10783 * 359.97438 * 9 8 7 27 27 H 1.08999 * 109.47022 * 300.00362 * 1 2 3 28 28 H 1.08999 * 109.47068 * 60.00000 * 1 2 3 29 29 H 1.09003 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47558 * 59.99500 * 5 3 2 31 31 H 1.09002 * 109.46818 * 299.99240 * 5 3 2 32 32 H 1.07992 * 125.96546 * 0.02562 * 7 6 5 33 33 H 0.97005 * 119.99898 * 180.02562 * 10 9 8 34 34 H 0.96995 * 120.00331 * 0.02562 * 13 11 10 35 35 H 1.08993 * 109.47380 * 300.00626 * 14 13 11 36 36 H 1.09000 * 109.46674 * 60.00502 * 14 13 11 37 37 H 1.09008 * 109.47607 * 60.00004 * 16 15 14 38 38 H 1.09006 * 109.47232 * 179.97438 * 16 15 14 39 39 H 1.09000 * 109.47455 * 299.99846 * 16 15 14 40 40 H 1.09002 * 109.47084 * 60.00479 * 17 15 14 41 41 H 1.08999 * 109.47118 * 179.97438 * 17 15 14 42 42 H 1.08994 * 109.47670 * 299.99992 * 17 15 14 43 43 H 0.96999 * 119.99646 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 3.9937 2.7199 -0.0011 7 6 4.8151 3.2293 0.9186 8 16 5.0530 4.9362 0.5533 9 6 4.0219 4.8001 -0.8037 10 7 3.6993 5.8415 -1.6661 11 6 4.2129 7.0704 -1.4604 12 8 4.9579 7.2684 -0.5203 13 7 3.9005 8.0799 -2.2970 14 6 4.4583 9.4160 -2.0731 15 6 3.9498 10.3691 -3.1566 16 6 4.3860 9.8580 -4.5311 17 6 2.4224 10.4379 -3.0993 18 6 4.5241 11.7432 -2.9267 19 1 5.1853 11.9193 -2.0910 20 6 4.2046 12.7759 -3.7825 21 7 3.3983 12.5619 -4.7993 22 14 4.9171 14.4792 -3.4979 23 1 6.2053 14.6049 -4.2259 24 1 3.9647 15.5037 -3.9965 25 1 5.1474 14.6829 -2.0452 26 7 3.5848 3.5845 -0.9111 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9558 0.7808 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 5.2570 2.6895 1.7429 33 1 3.1046 5.6836 -2.4160 34 1 3.3058 7.9221 -3.0468 35 1 4.1479 9.7799 -1.0937 36 1 5.5464 9.3669 -2.1144 37 1 3.9710 8.8639 -4.6977 38 1 4.0234 10.5367 -5.3031 39 1 5.4742 9.8088 -4.5720 40 1 2.1116 10.8021 -2.1201 41 1 2.0601 11.1172 -3.8709 42 1 2.0073 9.4440 -3.2658 43 1 3.1739 13.2884 -5.4015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590951049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -63.623723 kcal Electronic energy + Delta-G solvation = -26686.763938 eV Core-core repulsion = 22666.703519 eV Total energy + Delta-G solvation = -4020.060419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85820 -40.39235 -39.37210 -36.81047 -36.55915 -34.90369 -33.56293 -31.96215 -30.86034 -28.89357 -27.35551 -25.94100 -25.79991 -25.23846 -23.92992 -21.80458 -21.42723 -20.11144 -19.06277 -18.33270 -17.90604 -17.66349 -16.99183 -16.76806 -16.18821 -15.91511 -15.82050 -15.00665 -14.81287 -14.51795 -14.16252 -13.94574 -13.83466 -13.58467 -13.12141 -13.01533 -12.97858 -12.53156 -12.30751 -12.29021 -11.58151 -11.50546 -11.26226 -11.03616 -10.98046 -10.86551 -10.73745 -10.61460 -10.46459 -10.26535 -10.01424 -9.72755 -9.66560 -9.43903 -9.11723 -8.87277 -8.78611 -8.43408 -8.10986 -6.07606 -4.18042 0.81283 1.21686 1.88351 2.05587 2.28580 2.44061 2.82563 3.25457 3.30825 3.32812 3.36530 4.06206 4.32196 4.42600 4.69345 4.74867 4.82948 4.90417 5.03723 5.19488 5.19579 5.24743 5.45872 5.75248 5.98580 6.13324 6.21435 6.23252 6.38392 6.59224 6.62027 6.74485 6.83396 6.91435 6.93868 7.27506 7.48190 7.58239 7.63554 7.72027 7.93860 7.96599 8.08035 8.30494 8.47500 8.82368 9.48150 10.93867 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.002080 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.706605 B =13457.162999 C =14233.051048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.459 3.541 4 O -0.483 6.483 5 C -0.031 4.031 6 C 0.096 3.904 7 C -0.325 4.325 8 S 0.261 5.739 9 C 0.277 3.723 10 N -0.640 5.640 11 C 0.696 3.304 12 O -0.565 6.565 13 N -0.713 5.713 14 C 0.146 3.854 15 C 0.056 3.944 16 C -0.132 4.132 17 C -0.132 4.132 18 C -0.506 4.506 19 H 0.059 0.941 20 C 0.066 3.934 21 N -0.885 5.885 22 Si 0.895 3.105 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 N -0.508 5.508 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.174 0.826 33 H 0.418 0.582 34 H 0.401 0.599 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.005 0.995 38 H 0.086 0.914 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.087 0.913 42 H 0.006 0.994 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -23.738 7.808 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.300 3.700 4 O -0.368 6.368 5 C -0.072 4.072 6 C -0.038 4.038 7 C -0.467 4.467 8 S 0.512 5.488 9 C -0.092 4.092 10 N -0.292 5.292 11 C 0.395 3.605 12 O -0.443 6.443 13 N -0.366 5.366 14 C 0.024 3.976 15 C 0.055 3.945 16 C -0.189 4.189 17 C -0.190 4.190 18 C -0.545 4.545 19 H 0.077 0.923 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 N -0.230 5.230 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.191 0.809 33 H 0.256 0.744 34 H 0.236 0.764 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.024 0.976 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.024 0.976 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.895 -22.221 8.429 23.783 hybrid contribution -0.880 -0.104 -0.793 1.189 sum -1.775 -22.326 7.636 23.662 Atomic orbital electron populations 1.23234 0.76311 1.03498 1.02639 1.86476 1.23464 1.33625 1.84693 1.23498 0.91800 0.81434 0.73246 1.90733 1.66725 1.36120 1.43190 1.19781 0.88269 0.92454 1.06651 1.18843 0.97892 0.94674 0.92401 1.27226 1.10177 1.02107 1.07142 1.85140 1.42217 1.01646 1.19777 1.23042 0.99620 0.89767 0.96741 1.41953 1.50607 1.06306 1.30349 1.15973 0.81147 0.79583 0.83820 1.90827 1.40424 1.81015 1.32003 1.45517 1.51356 1.09748 1.30007 1.21817 0.97498 0.77542 1.00707 1.18391 0.93071 0.92843 0.90175 1.21846 0.98654 0.97165 1.01276 1.21848 0.97491 0.98018 1.01632 1.20936 1.28736 0.92687 1.12127 0.92289 1.24887 0.94843 0.98852 0.94958 1.69799 1.35056 1.32134 1.15358 0.86546 0.78826 0.83794 0.78565 1.20687 1.21265 1.19861 1.65979 1.27815 0.99640 1.29605 0.91995 0.91868 0.88177 0.86194 0.86066 0.80858 0.74408 0.76365 0.92202 0.92189 0.97571 0.89487 0.95284 0.95281 0.89467 0.97551 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.37 -3.38 10.56 -39.26 -0.41 -3.79 16 3 C 0.46 5.08 7.92 36.01 0.29 5.36 16 4 O -0.48 -7.25 15.19 -18.75 -0.28 -7.54 16 5 C -0.03 -0.26 6.30 -29.04 -0.18 -0.45 16 6 C 0.10 1.15 5.63 -84.20 -0.47 0.68 16 7 C -0.33 -3.54 11.05 29.05 0.32 -3.22 16 8 S 0.26 3.58 20.21 -107.50 -2.17 1.41 16 9 C 0.28 4.17 8.19 -87.35 -0.72 3.46 16 10 N -0.64 -9.25 5.41 -17.48 -0.09 -9.34 16 11 C 0.70 11.67 8.53 -86.92 -0.74 10.93 16 12 O -0.56 -10.82 13.81 5.30 0.07 -10.75 16 13 N -0.71 -11.91 4.96 -65.22 -0.32 -12.24 16 14 C 0.15 2.92 4.50 -4.04 -0.02 2.90 16 15 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 16 C -0.13 -2.85 8.08 37.15 0.30 -2.55 16 17 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 18 C -0.51 -12.79 8.01 -34.44 -0.28 -13.07 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.07 1.70 5.15 -17.82 -0.09 1.60 16 21 N -0.89 -23.05 9.35 55.43 0.52 -22.53 16 22 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 26 N -0.51 -7.45 9.73 -11.28 -0.11 -7.56 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.12 0.60 8.03 -51.93 -0.42 0.18 16 32 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.42 5.06 8.83 -40.82 -0.36 4.70 16 34 H 0.40 5.99 6.18 -40.82 -0.25 5.74 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.01 0.10 6.86 -51.92 -0.36 -0.26 16 38 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 43 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -31.19 370.73 -8.27 -39.46 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.72 Total: 6.44 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -0.31 Total: 5.57 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.01 Total: -51.67 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.63 Total: -22.08 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.17 Total: 1.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.19 -8.27 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590951049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.167 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds