Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00372 * 2 1 4 4 O 1.20826 * 119.99792 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00139 * 180.02562 * 3 2 1 6 6 C 1.50696 * 109.47057 * 179.97438 * 5 3 2 7 7 C 1.33417 * 122.71570 * 124.94653 * 6 5 3 8 8 S 1.76172 * 108.06652 * 180.02562 * 7 6 5 9 9 C 1.70968 * 90.34489 * 0.02562 * 8 7 6 10 10 N 1.39006 * 124.94258 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00092 * 0.03053 * 10 9 8 12 12 O 1.21578 * 120.00028 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99605 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99662 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47153 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47150 * 300.00480 * 15 14 13 17 17 C 1.53002 * 109.46553 * 60.00253 * 15 14 13 18 18 C 1.50697 * 109.46908 * 180.02562 * 15 14 13 19 19 H 1.08000 * 120.00410 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99508 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00313 * 0.02562 * 20 18 15 22 22 Si 1.86809 * 119.99773 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47017 * 89.99920 * 22 20 18 24 24 H 1.48500 * 109.46901 * 210.00087 * 22 20 18 25 25 H 1.48494 * 109.46985 * 329.99776 * 22 20 18 26 26 N 1.29623 * 110.10783 * 359.97438 * 9 8 7 27 27 H 1.08999 * 109.47022 * 300.00362 * 1 2 3 28 28 H 1.08999 * 109.47068 * 60.00000 * 1 2 3 29 29 H 1.09003 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47558 * 59.99500 * 5 3 2 31 31 H 1.09002 * 109.46818 * 299.99240 * 5 3 2 32 32 H 1.07992 * 125.96546 * 0.02562 * 7 6 5 33 33 H 0.97005 * 119.99898 * 180.02562 * 10 9 8 34 34 H 0.96995 * 120.00331 * 0.02562 * 13 11 10 35 35 H 1.08993 * 109.47380 * 300.00626 * 14 13 11 36 36 H 1.09000 * 109.46674 * 60.00502 * 14 13 11 37 37 H 1.09008 * 109.47607 * 60.00004 * 16 15 14 38 38 H 1.09006 * 109.47232 * 179.97438 * 16 15 14 39 39 H 1.09000 * 109.47455 * 299.99846 * 16 15 14 40 40 H 1.09002 * 109.47084 * 60.00479 * 17 15 14 41 41 H 1.08999 * 109.47118 * 179.97438 * 17 15 14 42 42 H 1.08994 * 109.47670 * 299.99992 * 17 15 14 43 43 H 0.96999 * 119.99646 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 3.9937 2.7199 -0.0011 7 6 4.8151 3.2293 0.9186 8 16 5.0530 4.9362 0.5533 9 6 4.0219 4.8001 -0.8037 10 7 3.6993 5.8415 -1.6661 11 6 4.2129 7.0704 -1.4604 12 8 4.9579 7.2684 -0.5203 13 7 3.9005 8.0799 -2.2970 14 6 4.4583 9.4160 -2.0731 15 6 3.9498 10.3691 -3.1566 16 6 4.3860 9.8580 -4.5311 17 6 2.4224 10.4379 -3.0993 18 6 4.5241 11.7432 -2.9267 19 1 5.1853 11.9193 -2.0910 20 6 4.2046 12.7759 -3.7825 21 7 3.3983 12.5619 -4.7993 22 14 4.9171 14.4792 -3.4979 23 1 6.2053 14.6049 -4.2259 24 1 3.9647 15.5037 -3.9965 25 1 5.1474 14.6829 -2.0452 26 7 3.5848 3.5845 -0.9111 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9558 0.7808 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 5.2570 2.6895 1.7429 33 1 3.1046 5.6836 -2.4160 34 1 3.3058 7.9221 -3.0468 35 1 4.1479 9.7799 -1.0937 36 1 5.5464 9.3669 -2.1144 37 1 3.9710 8.8639 -4.6977 38 1 4.0234 10.5367 -5.3031 39 1 5.4742 9.8088 -4.5720 40 1 2.1116 10.8021 -2.1201 41 1 2.0601 11.1172 -3.8709 42 1 2.0073 9.4440 -3.2658 43 1 3.1739 13.2884 -5.4015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590951049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -83.361754 kcal Electronic energy + Delta-G solvation = -26687.619843 eV Core-core repulsion = 22666.703519 eV Total energy + Delta-G solvation = -4020.916325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.85002 -41.49631 -40.38377 -38.40248 -37.44051 -36.10131 -35.17421 -33.07443 -32.41458 -29.74169 -28.01383 -27.56845 -27.55449 -26.98990 -25.12207 -22.89312 -22.43967 -21.20716 -20.70078 -19.56286 -18.90812 -18.61877 -17.93656 -17.76811 -17.55311 -17.15286 -16.97757 -16.64705 -16.31174 -15.58521 -15.45594 -15.04845 -14.77305 -14.75803 -14.49042 -14.23869 -14.07698 -13.99732 -13.29415 -13.20241 -13.11358 -12.91873 -12.71327 -12.65877 -12.54537 -12.27454 -12.12314 -11.97460 -11.76657 -11.51665 -11.49701 -11.29523 -11.19337 -10.71384 -10.70202 -10.40953 -10.18038 -10.15018 -9.17275 -8.01943 -6.17313 -0.18679 0.19770 0.90761 1.22875 1.25976 1.42477 1.43685 1.47261 1.54930 1.87364 2.20844 2.45925 2.96323 3.22322 3.38345 3.97075 4.10577 4.32039 4.33536 4.34904 4.39391 4.51657 4.57207 4.65213 4.69652 4.72381 4.81324 4.95310 5.04952 5.05655 5.17181 5.19630 5.26054 5.43813 5.49450 5.58391 5.66763 5.68954 6.14597 6.20729 6.42768 6.60750 6.80079 6.83576 6.87063 7.16618 7.50453 8.96985 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.002080 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.706605 B =13457.162999 C =14233.051048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.532 6.532 5 C -0.027 4.027 6 C 0.073 3.927 7 C -0.295 4.295 8 S 0.229 5.771 9 C 0.249 3.751 10 N -0.631 5.631 11 C 0.700 3.300 12 O -0.590 6.590 13 N -0.707 5.707 14 C 0.165 3.835 15 C 0.051 3.949 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.524 4.524 19 H 0.049 0.951 20 C 0.026 3.974 21 N -0.900 5.900 22 Si 0.945 3.055 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.274 1.274 26 N -0.518 5.518 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.164 0.836 32 H 0.215 0.785 33 H 0.428 0.572 34 H 0.410 0.590 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.061 0.939 39 H 0.021 0.979 40 H 0.020 0.980 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 -26.360 8.567 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.303 3.697 4 O -0.421 6.421 5 C -0.067 4.067 6 C -0.059 4.059 7 C -0.436 4.436 8 S 0.479 5.521 9 C -0.119 4.119 10 N -0.284 5.284 11 C 0.399 3.601 12 O -0.470 6.470 13 N -0.361 5.361 14 C 0.041 3.959 15 C 0.050 3.950 16 C -0.180 4.180 17 C -0.181 4.181 18 C -0.563 4.563 19 H 0.067 0.933 20 C -0.173 4.173 21 N -0.538 5.538 22 Si 0.772 3.228 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.199 1.199 26 N -0.241 5.241 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.231 0.769 33 H 0.267 0.733 34 H 0.248 0.752 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.648 -24.915 9.174 26.558 hybrid contribution -0.993 0.541 -0.966 1.487 sum -1.640 -24.374 8.209 25.771 Atomic orbital electron populations 1.23470 0.75251 1.05536 1.02025 1.86479 1.24551 1.32686 1.84100 1.24059 0.92833 0.81101 0.71710 1.90721 1.67944 1.37669 1.45718 1.20021 0.86412 0.90511 1.09737 1.19460 0.98270 0.96052 0.92160 1.27574 1.08756 0.99989 1.07268 1.85187 1.42410 1.04513 1.19963 1.23208 1.01031 0.90107 0.97573 1.41662 1.50465 1.05560 1.30669 1.15903 0.80857 0.80056 0.83294 1.90822 1.41454 1.81755 1.32949 1.45184 1.51625 1.08774 1.30560 1.21346 0.96777 0.78582 0.99172 1.18382 0.93266 0.92169 0.91148 1.21688 0.98199 0.98147 0.99964 1.21697 0.97176 0.99041 1.00174 1.21240 1.28727 0.94515 1.11798 0.93269 1.25465 0.95345 1.01509 0.95024 1.69912 1.35609 1.32632 1.15688 0.85756 0.78153 0.80657 0.78212 1.20541 1.21145 1.19930 1.66008 1.27682 0.99800 1.30628 0.92404 0.92779 0.84811 0.83997 0.81842 0.76856 0.73290 0.75224 0.93467 0.93228 0.94557 0.91988 0.95966 0.96114 0.91936 0.94613 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -5.87 10.56 -51.42 -0.54 -6.41 16 3 C 0.46 9.25 7.92 71.24 0.56 9.82 16 4 O -0.53 -15.63 15.19 21.96 0.33 -15.30 16 5 C -0.03 -0.37 6.30 29.10 0.18 -0.18 16 6 C 0.07 1.57 5.63 41.44 0.23 1.81 16 7 C -0.30 -5.57 11.05 66.73 0.74 -4.84 16 8 S 0.23 6.08 20.21 -56.49 -1.14 4.94 16 9 C 0.25 7.35 8.19 179.20 1.47 8.81 16 10 N -0.63 -17.94 5.41 -327.47 -1.77 -19.71 16 11 C 0.70 23.26 8.53 179.05 1.53 24.79 16 12 O -0.59 -22.73 13.81 -3.96 -0.05 -22.78 16 13 N -0.71 -23.16 4.96 -478.54 -2.37 -25.53 16 14 C 0.16 6.57 4.50 86.38 0.39 6.96 16 15 C 0.05 2.27 0.50 -52.93 -0.03 2.24 16 16 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 17 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 18 C -0.52 -26.80 8.01 25.60 0.21 -26.60 16 19 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 20 C 0.03 1.36 5.15 84.65 0.44 1.79 16 21 N -0.90 -47.30 9.35 21.45 0.20 -47.10 16 22 Si 0.95 41.97 29.54 68.60 2.03 44.00 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 N -0.52 -14.60 9.73 -189.59 -1.85 -16.44 16 27 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 28 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.16 0.76 8.03 -2.39 -0.02 0.74 16 32 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.43 10.06 8.83 -92.70 -0.82 9.25 16 34 H 0.41 11.68 6.18 -92.71 -0.57 11.11 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.04 1.29 6.86 -2.38 -0.02 1.27 16 38 H 0.06 2.99 6.07 -2.38 -0.01 2.98 16 39 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 42 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 43 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -68.88 370.73 2.58 -66.30 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -0.32 Total: 21.24 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 8.08 Total: 16.80 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -5.79 Total: -108.79 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.26 Total: -44.49 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.14 Total: 4.94 kcal Total: -68.88 2.58 -66.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590951049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.062 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds