Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47267 * 2 1 4 4 H 1.09002 * 109.47182 * 178.00280 * 3 2 1 5 5 C 1.50703 * 109.47149 * 298.00069 * 3 2 1 6 6 H 1.07997 * 120.00090 * 115.15748 * 5 3 2 7 7 C 1.37874 * 119.99894 * 295.15965 * 5 3 2 8 8 N 1.31516 * 119.99960 * 352.32996 * 7 5 3 9 9 Si 1.86806 * 120.00171 * 172.32785 * 7 5 3 10 10 H 1.48499 * 109.47013 * 270.00213 * 9 7 5 11 11 H 1.48505 * 109.46788 * 29.99911 * 9 7 5 12 12 H 1.48500 * 109.46962 * 149.99768 * 9 7 5 13 13 N 1.46898 * 109.47348 * 57.99892 * 3 2 1 14 14 C 1.46900 * 110.99872 * 82.20482 * 13 3 2 15 15 C 1.50702 * 109.47289 * 185.19044 * 14 13 3 16 16 O 1.21287 * 119.99858 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00429 * 180.02562 * 15 14 13 18 18 C 1.39924 * 120.00294 * 184.99597 * 17 15 14 19 19 C 1.38892 * 120.07044 * 324.03041 * 18 17 15 20 20 C 1.38093 * 119.92947 * 179.72162 * 19 18 17 21 21 C 1.38301 * 120.06890 * 0.57872 * 20 19 18 22 22 C 1.38264 * 120.14249 * 359.67708 * 21 20 19 23 23 S 1.76201 * 119.96497 * 180.02562 * 22 21 20 24 24 N 1.65605 * 107.21457 * 270.02016 * 23 22 21 25 25 O 1.42101 * 106.40350 * 23.55883 * 23 22 21 26 26 O 1.42100 * 106.40388 * 156.48283 * 23 22 21 27 27 C 1.38134 * 120.06832 * 0.04526 * 22 21 20 28 28 H 1.09000 * 109.47023 * 305.15977 * 1 2 3 29 29 H 1.09002 * 109.47103 * 65.15645 * 1 2 3 30 30 H 1.09000 * 109.47533 * 185.15406 * 1 2 3 31 31 H 1.09003 * 109.47189 * 239.99685 * 2 1 3 32 32 H 1.08998 * 109.46801 * 119.99651 * 2 1 3 33 33 H 0.96994 * 119.99976 * 358.35626 * 8 7 5 34 34 H 1.00899 * 111.00534 * 206.15617 * 13 3 2 35 35 H 1.09004 * 109.47276 * 305.18467 * 14 13 3 36 36 H 1.08993 * 109.47321 * 65.18611 * 14 13 3 37 37 H 0.97001 * 119.99729 * 4.99282 * 17 15 14 38 38 H 1.08000 * 120.03086 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.96381 * 180.25779 * 20 19 18 40 40 H 1.07998 * 119.92767 * 179.70150 * 21 20 19 41 41 H 0.97005 * 119.99513 * 150.00215 * 24 23 22 42 42 H 0.96993 * 120.00155 * 330.00264 * 24 23 22 43 43 H 1.08002 * 120.03283 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 0.0358 5 6 1.5786 2.1384 -1.2545 6 1 0.8922 2.9697 -1.1896 7 6 2.0327 1.7140 -2.4852 8 7 2.9804 0.8050 -2.5586 9 14 1.3020 2.4298 -4.0482 10 1 0.1389 1.6094 -4.4717 11 1 0.8580 3.8239 -3.7937 12 1 2.3281 2.4252 -5.1216 13 7 1.5113 2.1488 1.1745 14 6 2.3188 1.8634 2.3680 15 6 1.6757 2.4994 3.5735 16 8 0.6463 3.1289 3.4504 17 7 2.2450 2.3696 4.7881 18 6 1.5955 2.8696 5.9222 19 6 0.8635 4.0472 5.8425 20 6 0.2190 4.5349 6.9622 21 6 0.3117 3.8584 8.1649 22 6 1.0439 2.6887 8.2488 23 16 1.1584 1.8302 9.7833 24 7 2.4812 2.4268 10.5812 25 8 0.0225 2.2164 10.5448 26 8 1.4577 0.4780 9.4653 27 6 1.6863 2.1925 7.1311 28 1 -0.3633 0.5918 0.8402 29 1 -0.3633 0.4318 -0.9326 30 1 -0.3634 -1.0235 0.0923 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3765 0.4507 -1.7472 34 1 1.4557 3.1418 1.0046 35 1 2.3805 0.7852 2.5157 36 1 3.3213 2.2698 2.2342 37 1 3.1049 1.9295 4.8762 38 1 0.7951 4.5787 4.9048 39 1 -0.3539 5.4484 6.8998 40 1 -0.1894 4.2445 9.0402 41 1 2.4968 2.4413 11.5510 42 1 3.2403 2.7617 10.0789 43 1 2.2585 1.2789 7.1974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594011603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = -82.095113 kcal Electronic energy + Delta-G solvation = -26843.837648 eV Core-core repulsion = 22822.976249 eV Total energy + Delta-G solvation = -4020.861399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72451 -38.78698 -37.51646 -36.47792 -36.18565 -34.95549 -33.63777 -32.86889 -31.65034 -30.93973 -30.11001 -27.22060 -24.75418 -23.87138 -23.49237 -22.73271 -20.90129 -19.80647 -19.37182 -18.82226 -17.82610 -17.75899 -17.17757 -16.69262 -16.64639 -16.05222 -15.66663 -15.49244 -14.88924 -14.49394 -14.24849 -14.12079 -13.79151 -13.57151 -13.38484 -13.14825 -12.70007 -12.54874 -12.45274 -12.38968 -12.23497 -12.07055 -11.89645 -11.68860 -11.43668 -11.17954 -10.92213 -10.82217 -10.66383 -10.26905 -10.16185 -10.10717 -9.83273 -9.75918 -9.57153 -8.58582 -8.57229 -8.39122 -7.54332 -6.42753 -4.13699 -0.00645 0.45462 0.84836 2.51036 2.68906 2.84523 3.13721 3.40893 3.42140 3.43463 3.59650 4.12980 4.42143 4.47152 4.63732 4.69379 4.84111 5.03872 5.08270 5.18714 5.30408 5.31294 5.51987 5.54705 5.58115 5.59959 5.85167 5.97537 6.07626 6.20197 6.38272 6.54138 6.56468 6.58892 6.83697 6.94754 7.14168 7.18371 7.37673 7.49871 7.75408 7.98262 8.06495 8.39133 8.48893 8.79042 9.56331 10.94621 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027589 B = 0.002026 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.636945 B =13820.393915 C =14214.249878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.108 4.108 3 C 0.206 3.794 4 H -0.007 1.007 5 C -0.594 4.594 6 H 0.056 0.944 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 1.069 2.931 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.661 5.661 14 C 0.043 3.957 15 C 0.515 3.485 16 O -0.501 6.501 17 N -0.684 5.684 18 C 0.138 3.862 19 C -0.063 4.063 20 C -0.121 4.121 21 C -0.037 4.037 22 C -0.660 4.660 23 S 2.705 3.295 24 N -1.249 6.249 25 O -0.963 6.963 26 O -0.960 6.960 27 C -0.054 4.054 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.018 0.982 31 H 0.063 0.937 32 H 0.017 0.983 33 H 0.270 0.730 34 H 0.344 0.656 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.413 0.587 38 H 0.149 0.851 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.420 0.580 42 H 0.417 0.583 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 5.776 25.650 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.147 4.147 3 C 0.098 3.902 4 H 0.011 0.989 5 C -0.632 4.632 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.546 5.546 9 Si 0.898 3.102 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.212 1.212 13 N -0.294 5.294 14 C -0.090 4.090 15 C 0.303 3.697 16 O -0.373 6.373 17 N -0.331 5.331 18 C 0.042 3.958 19 C -0.083 4.083 20 C -0.140 4.140 21 C -0.057 4.057 22 C -0.748 4.748 23 S 2.793 3.207 24 N -0.923 5.923 25 O -0.952 6.952 26 O -0.949 6.949 27 C -0.076 4.076 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.163 0.837 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.249 0.751 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.251 0.749 42 H 0.244 0.756 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.772 4.897 24.130 24.634 hybrid contribution 1.711 0.912 1.163 2.261 sum 2.482 5.808 25.293 26.070 Atomic orbital electron populations 1.21434 0.96316 0.97748 1.02424 1.21532 0.96524 0.98063 0.98543 1.19287 0.92073 0.91429 0.87394 0.98940 1.21926 1.31038 1.18740 0.91507 0.92567 1.25724 0.95002 0.95663 1.01663 1.70786 1.23341 1.27903 1.32528 0.83534 0.75927 0.75586 0.75190 1.21316 1.21486 1.21192 1.60317 1.51462 1.15185 1.02438 1.21819 0.95493 1.01372 0.90314 1.21370 0.84732 0.79816 0.83777 1.90684 1.22999 1.38797 1.84776 1.43723 1.23805 1.60131 1.05455 1.17824 0.97736 0.93358 0.86899 1.21763 0.93838 0.92909 0.99794 1.21259 0.99860 1.00775 0.92107 1.20908 0.93915 0.91907 0.99007 1.30414 1.12832 1.11742 1.19778 1.01482 0.72695 0.73574 0.72961 1.53139 1.35807 1.84333 1.18973 1.93600 1.48797 1.83375 1.69461 1.93625 1.84164 1.32766 1.84373 1.20681 0.97811 0.97896 0.91230 0.92664 0.92534 0.96337 0.91883 0.96411 0.91882 0.83741 0.88321 0.92890 0.75131 0.83300 0.84476 0.84016 0.74941 0.75584 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.50 37.16 0.35 -2.33 16 2 C -0.11 -2.46 5.43 -26.73 -0.15 -2.60 16 3 C 0.21 4.84 1.92 -68.87 -0.13 4.70 16 4 H -0.01 -0.17 7.27 -51.93 -0.38 -0.55 16 5 C -0.59 -15.73 7.43 -34.44 -0.26 -15.98 16 6 H 0.06 1.52 7.72 -52.49 -0.41 1.12 16 7 C 0.02 0.66 5.21 -17.82 -0.09 0.57 16 8 N -0.91 -26.05 12.92 55.43 0.72 -25.34 16 9 Si 1.07 24.58 29.91 -169.99 -5.08 19.50 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 13 N -0.66 -13.45 4.89 -109.22 -0.53 -13.98 16 14 C 0.04 0.67 5.95 -4.98 -0.03 0.64 16 15 C 0.51 7.56 7.72 -10.99 -0.08 7.47 16 16 O -0.50 -9.06 13.80 5.55 0.08 -8.98 16 17 N -0.68 -7.40 5.33 -9.86 -0.05 -7.45 16 18 C 0.14 1.54 6.28 -83.69 -0.53 1.01 16 19 C -0.06 -0.72 8.69 -39.39 -0.34 -1.07 16 20 C -0.12 -1.13 10.04 -39.61 -0.40 -1.53 16 21 C -0.04 -0.33 9.52 -39.55 -0.38 -0.70 16 22 C -0.66 -5.83 5.97 -39.61 -0.24 -6.06 16 23 S 2.70 21.68 6.28 -107.50 -0.68 21.00 16 24 N -1.25 -4.58 9.52 60.35 0.57 -4.01 16 25 O -0.96 -10.51 17.28 -57.17 -0.99 -11.49 16 26 O -0.96 -11.01 17.28 -57.17 -0.99 -12.00 16 27 C -0.05 -0.52 9.44 -39.39 -0.37 -0.89 16 28 H 0.05 1.21 7.39 -51.93 -0.38 0.83 16 29 H 0.06 1.33 7.46 -51.93 -0.39 0.95 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 1.58 6.29 -51.93 -0.33 1.25 16 32 H 0.02 0.36 7.26 -51.93 -0.38 -0.02 16 33 H 0.27 7.65 6.07 -40.82 -0.25 7.40 16 34 H 0.34 7.22 8.21 -39.29 -0.32 6.90 16 35 H 0.10 1.47 7.17 -51.93 -0.37 1.09 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.41 3.02 8.83 -40.82 -0.36 2.66 16 38 H 0.15 1.92 6.28 -52.49 -0.33 1.59 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.14 0.97 7.61 -52.49 -0.40 0.57 16 41 H 0.42 0.87 8.96 -34.47 -0.31 0.56 16 42 H 0.42 0.63 8.96 -34.47 -0.31 0.32 16 43 H 0.14 1.12 7.62 -52.49 -0.40 0.72 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -36.54 369.10 -9.40 -45.95 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.37 Total: 8.00 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.64 Total: -16.76 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.70 Total: -50.78 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.90 Total: -32.48 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.50 kcal Atomic # 16 Polarization: 21.68 SS G_CDS: -0.68 Total: 21.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.54 -9.40 -45.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594011603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.150 kcal (2) G-P(sol) polarization free energy of solvation -36.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds