Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46968 * 2 1 4 4 H 1.09000 * 109.47591 * 55.00111 * 3 2 1 5 5 C 1.50699 * 109.47075 * 174.99954 * 3 2 1 6 6 H 1.08000 * 120.00384 * 120.00139 * 5 3 2 7 7 C 1.37887 * 119.99827 * 299.99809 * 5 3 2 8 8 N 1.31510 * 119.99642 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 119.99789 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47241 * 89.99994 * 9 7 5 11 11 H 1.48501 * 109.46759 * 209.99752 * 9 7 5 12 12 H 1.48498 * 109.47565 * 329.99659 * 9 7 5 13 13 N 1.46499 * 109.47114 * 294.99640 * 3 2 1 14 14 C 1.34780 * 119.99778 * 85.00190 * 13 3 2 15 15 O 1.21277 * 120.00004 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99795 * 179.97438 * 14 13 3 17 17 N 1.46498 * 109.46899 * 180.02562 * 16 14 13 18 18 S 1.65607 * 119.99769 * 163.76312 * 17 16 14 19 19 O 1.42101 * 106.40259 * 310.09005 * 18 17 16 20 20 O 1.42108 * 106.40070 * 177.17290 * 18 17 16 21 21 C 1.76198 * 107.21950 * 63.63376 * 18 17 16 22 22 C 1.38122 * 120.03371 * 244.28097 * 21 18 17 23 23 C 1.38270 * 120.07392 * 179.97438 * 22 21 18 24 24 C 1.38304 * 120.14634 * 0.04573 * 23 22 21 25 25 C 1.38083 * 120.07988 * 359.97438 * 24 23 22 26 26 C 1.38887 * 120.04076 * 64.00456 * 21 18 17 27 27 N 1.39678 * 120.07210 * 0.02578 * 26 21 18 28 28 H 1.09004 * 109.47190 * 300.00165 * 1 2 3 29 29 H 1.08999 * 109.47078 * 59.99829 * 1 2 3 30 30 H 1.08999 * 109.47306 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47420 * 239.99832 * 2 1 3 32 32 H 1.09004 * 109.47046 * 119.99692 * 2 1 3 33 33 H 0.97004 * 119.99703 * 180.02562 * 8 7 5 34 34 H 0.96994 * 120.00422 * 264.99717 * 13 3 2 35 35 H 1.08996 * 109.47144 * 60.00379 * 16 14 13 36 36 H 1.09000 * 109.47603 * 299.99836 * 16 14 13 37 37 H 0.96996 * 120.00337 * 343.76272 * 17 16 14 38 38 H 1.07999 * 119.96481 * 359.97438 * 22 21 18 39 39 H 1.08002 * 119.92669 * 180.02562 * 23 22 21 40 40 H 1.08002 * 119.96320 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.04178 * 180.02562 * 25 24 23 42 42 H 0.96998 * 120.00320 * 354.28155 * 27 26 21 43 43 H 0.97004 * 120.00066 * 174.28420 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8796 1.3359 9 14 3.0963 0.1089 2.5701 10 1 2.8755 -1.3272 2.2634 11 1 3.7935 0.2348 3.8752 12 1 1.7876 0.8073 2.6387 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3392 2.6326 -0.4342 16 6 0.0367 3.3385 -2.6545 17 7 -1.3218 3.8716 -2.5265 18 16 -1.8755 4.9960 -3.6090 19 8 -0.8812 6.0088 -3.6794 20 8 -3.2279 5.2575 -3.2595 21 6 -1.9112 4.2228 -5.1918 22 6 -1.0922 4.6827 -6.2045 23 6 -1.1191 4.0762 -7.4468 24 6 -1.9664 3.0083 -7.6801 25 6 -2.7882 2.5437 -6.6723 26 6 -2.7588 3.1467 -5.4210 27 7 -3.5845 2.6758 -4.3976 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.8770 0.4811 2.1126 34 1 2.2719 2.1231 -1.9977 35 1 0.0681 2.6145 -3.4686 36 1 0.7281 4.1541 -2.8668 37 1 -1.8970 3.5660 -1.8078 38 1 -0.4299 5.5169 -6.0258 39 1 -0.4774 4.4374 -8.2368 40 1 -1.9854 2.5370 -8.6517 41 1 -3.4493 1.7095 -6.8551 42 1 -3.5077 3.0448 -3.5039 43 1 -4.2348 1.9797 -4.5806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -79.556218 kcal Electronic energy + Delta-G solvation = -28007.146438 eV Core-core repulsion = 23986.395134 eV Total energy + Delta-G solvation = -4020.751304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.71920 -39.48503 -37.48701 -36.01053 -35.84614 -35.03020 -34.38701 -32.49044 -31.64437 -31.52596 -29.04450 -28.10992 -26.50099 -23.66959 -22.74393 -22.64589 -21.05379 -19.88871 -19.67985 -18.46207 -18.03227 -17.61418 -17.12193 -16.85228 -16.29469 -15.83063 -15.56638 -15.23537 -15.09183 -14.83973 -14.48513 -14.22424 -14.04497 -13.84709 -13.59422 -13.06588 -12.96398 -12.72266 -12.37327 -12.27749 -12.19415 -12.14463 -11.91122 -11.81897 -11.80877 -11.18699 -11.15474 -10.98217 -10.94801 -10.69761 -9.99769 -9.87438 -9.68801 -9.63501 -9.31464 -9.26033 -8.81231 -8.19810 -8.16504 -6.25664 -4.28717 0.19403 0.64486 1.19694 2.73873 3.02122 3.19099 3.22655 3.31959 3.32744 3.35686 3.60562 3.78840 4.18208 4.26794 4.53827 4.64583 4.84588 4.96679 5.06026 5.07402 5.21609 5.28056 5.28845 5.51922 5.54373 5.64088 5.87394 5.90106 5.93970 6.08686 6.14022 6.39507 6.56476 6.61403 6.73258 6.80413 6.85644 6.88853 7.14063 7.15896 7.20677 7.43375 8.04606 8.42224 8.67429 8.79110 9.34394 10.86295 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.002887 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.646452 B = 9695.073583 C = 9766.302697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.695 5.695 14 C 0.502 3.498 15 O -0.543 6.543 16 C 0.097 3.903 17 N -1.107 6.107 18 S 2.701 3.299 19 O -0.956 6.956 20 O -0.961 6.961 21 C -0.754 4.754 22 C 0.022 3.978 23 C -0.197 4.197 24 C -0.019 4.019 25 C -0.216 4.216 26 C 0.314 3.686 27 N -0.865 5.865 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.268 0.732 34 H 0.398 0.602 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.426 0.574 38 H 0.143 0.857 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.400 0.600 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.860 2.322 -17.784 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.343 5.343 14 C 0.285 3.715 15 O -0.422 6.422 16 C -0.033 4.033 17 N -0.870 5.870 18 S 2.791 3.209 19 O -0.946 6.946 20 O -0.950 6.950 21 C -0.847 4.847 22 C 0.003 3.997 23 C -0.218 4.218 24 C -0.039 4.039 25 C -0.239 4.239 26 C 0.204 3.796 27 N -0.403 5.403 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.231 0.769 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.264 0.736 38 H 0.161 0.839 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.231 0.769 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -16.347 3.152 -16.911 23.731 hybrid contribution -0.410 -1.477 0.398 1.584 sum -16.757 1.675 -16.514 23.586 Atomic orbital electron populations 1.21881 0.97011 0.99061 1.02180 1.22294 0.94294 0.99939 1.01246 1.19193 0.95796 0.88479 0.82635 0.93137 1.21038 0.88499 1.40004 1.07973 0.90055 1.24836 0.94870 0.95135 0.97655 1.69863 1.08686 1.44303 1.29826 0.86898 0.80942 0.79882 0.80965 1.20272 1.22134 1.18500 1.46122 1.14491 1.55436 1.18270 1.20162 0.83055 0.79396 0.88847 1.90659 1.51561 1.59943 1.40038 1.21115 0.83818 1.00292 0.98098 1.55281 1.22569 1.63932 1.45267 1.01610 0.73403 0.72965 0.72960 1.93574 1.60488 1.53969 1.86550 1.93598 1.34879 1.83320 1.83242 1.30209 1.14890 1.15407 1.24189 1.20770 0.92017 0.95630 0.91315 1.21056 1.03355 0.99607 0.97789 1.21207 0.91356 0.93305 0.97992 1.20706 1.06022 1.04475 0.92683 1.17164 0.85733 0.88113 0.88633 1.42942 1.41423 1.45126 1.10830 0.92824 0.93011 0.94974 0.92219 0.92683 0.92223 0.76863 0.89017 0.87353 0.73597 0.83904 0.85283 0.85343 0.85328 0.76886 0.76161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.52 37.16 0.32 -2.37 16 2 C -0.14 -2.91 5.11 -26.73 -0.14 -3.05 16 3 C 0.24 5.41 1.83 -69.09 -0.13 5.29 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.92 16 5 C -0.54 -13.94 9.31 -34.44 -0.32 -14.26 16 6 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 9 Si 0.88 21.19 24.41 -169.99 -4.15 17.04 16 10 H -0.28 -6.40 6.83 56.52 0.39 -6.02 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 13 N -0.69 -12.40 5.02 -54.94 -0.28 -12.68 16 14 C 0.50 8.26 6.47 -10.98 -0.07 8.19 16 15 O -0.54 -10.48 12.88 5.56 0.07 -10.41 16 16 C 0.10 1.16 6.70 -5.20 -0.03 1.12 16 17 N -1.11 -12.91 5.36 -11.66 -0.06 -12.97 16 18 S 2.70 32.60 4.98 -107.50 -0.53 32.06 16 19 O -0.96 -13.90 16.47 -57.17 -0.94 -14.84 16 20 O -0.96 -13.44 16.49 -57.17 -0.94 -14.38 16 21 C -0.75 -7.94 5.87 -39.38 -0.23 -8.17 16 22 C 0.02 0.22 9.54 -39.61 -0.38 -0.16 16 23 C -0.20 -1.58 10.04 -39.55 -0.40 -1.97 16 24 C -0.02 -0.14 10.04 -39.61 -0.40 -0.54 16 25 C -0.22 -1.72 9.90 -39.38 -0.39 -2.11 16 26 C 0.31 2.99 6.72 -83.79 -0.56 2.43 16 27 N -0.86 -7.01 8.84 32.41 0.29 -6.72 16 28 H 0.05 1.07 7.85 -51.93 -0.41 0.66 16 29 H 0.05 0.91 5.65 -51.93 -0.29 0.62 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.23 3.21 -51.93 -0.17 1.06 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.40 6.11 8.54 -40.82 -0.35 5.76 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.11 1.18 7.76 -51.93 -0.40 0.78 16 37 H 0.43 4.98 7.73 -34.47 -0.27 4.71 16 38 H 0.14 1.25 7.33 -52.49 -0.38 0.86 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.40 3.51 5.96 -40.82 -0.24 3.26 16 43 H 0.41 2.21 8.85 -40.82 -0.36 1.85 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -34.71 358.75 -8.55 -43.26 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -5.36 Total: 12.82 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -2.83 Total: -13.55 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.72 Total: -57.41 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -1.81 Total: -39.63 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.15 Total: 17.04 kcal Atomic # 16 Polarization: 32.60 SS G_CDS: -0.53 Total: 32.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.71 -8.55 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.296 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds