Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46965 * 2 1 4 4 H 1.09004 * 109.47331 * 305.00014 * 3 2 1 5 5 C 1.50695 * 109.47128 * 184.99901 * 3 2 1 6 6 H 1.08003 * 120.00090 * 239.99870 * 5 3 2 7 7 C 1.37871 * 120.00190 * 60.00045 * 5 3 2 8 8 N 1.31513 * 120.00298 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.47428 * 270.00364 * 9 7 5 11 11 H 1.48504 * 109.46897 * 30.00300 * 9 7 5 12 12 H 1.48499 * 109.47409 * 149.99779 * 9 7 5 13 13 N 1.46509 * 109.47219 * 64.99648 * 3 2 1 14 14 C 1.34775 * 120.00091 * 275.00189 * 13 3 2 15 15 O 1.21280 * 119.99759 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99949 * 179.97438 * 14 13 3 17 17 N 1.46499 * 109.47214 * 180.02562 * 16 14 13 18 18 S 1.65596 * 120.00339 * 164.22407 * 17 16 14 19 19 O 1.42092 * 106.40372 * 178.28436 * 18 17 16 20 20 O 1.42108 * 106.39936 * 311.20636 * 18 17 16 21 21 C 1.76201 * 107.21858 * 64.74131 * 18 17 16 22 22 C 1.38121 * 120.04169 * 244.12609 * 21 18 17 23 23 C 1.38268 * 120.07542 * 179.97438 * 22 21 18 24 24 C 1.38300 * 120.15016 * 0.04902 * 23 22 21 25 25 C 1.38090 * 120.07648 * 359.97175 * 24 23 22 26 26 C 1.38890 * 120.03257 * 63.84863 * 21 18 17 27 27 N 1.39673 * 120.07710 * 0.02591 * 26 21 18 28 28 H 1.08997 * 109.47578 * 299.99856 * 1 2 3 29 29 H 1.09003 * 109.47345 * 60.00578 * 1 2 3 30 30 H 1.09001 * 109.46757 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47127 * 239.99596 * 2 1 3 32 32 H 1.09005 * 109.46956 * 120.00083 * 2 1 3 33 33 H 0.97003 * 120.00439 * 180.02562 * 8 7 5 34 34 H 0.96996 * 119.99484 * 94.99900 * 13 3 2 35 35 H 1.09004 * 109.46715 * 299.99585 * 16 14 13 36 36 H 1.08996 * 109.47104 * 59.99498 * 16 14 13 37 37 H 0.97007 * 119.99684 * 344.22510 * 17 16 14 38 38 H 1.08003 * 119.95889 * 359.97438 * 22 21 18 39 39 H 1.07998 * 119.92441 * 180.02562 * 23 22 21 40 40 H 1.07996 * 119.96323 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.03701 * 180.02562 * 25 24 23 42 42 H 0.97003 * 120.00098 * 353.72276 * 27 26 21 43 43 H 0.97003 * 120.00346 * 173.72497 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8796 -1.3357 9 14 3.0965 0.1088 -2.5700 10 1 2.8756 -1.3272 -2.2634 11 1 1.7877 0.8073 -2.6387 12 1 3.7937 0.2348 -3.8751 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3393 2.6326 0.4340 16 6 0.0361 3.3377 2.6548 17 7 -1.3229 3.8698 2.5271 18 16 -2.1703 4.3100 3.8799 19 8 -3.4174 4.8169 3.4250 20 8 -2.0580 3.2274 4.7936 21 6 -1.3179 5.6680 4.6105 22 6 -0.7561 5.5374 5.8656 23 6 -0.0866 6.6024 6.4393 24 6 0.0222 7.8020 5.7597 25 6 -0.5375 7.9396 4.5048 26 6 -1.2052 6.8693 3.9226 27 7 -1.7675 7.0032 2.6511 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8771 0.4818 -2.1126 34 1 2.2718 2.1232 1.9978 35 1 0.0670 2.6129 3.4684 36 1 0.7274 4.1529 2.8679 37 1 -1.7262 3.9643 1.6499 38 1 -0.8399 4.6022 6.3993 39 1 0.3521 6.4974 7.4206 40 1 0.5454 8.6320 6.2108 41 1 -0.4518 8.8765 3.9745 42 1 -2.1573 6.2325 2.2095 43 1 -1.7683 7.8669 2.2096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = -79.854408 kcal Electronic energy + Delta-G solvation = -27964.901664 eV Core-core repulsion = 23944.137430 eV Total energy + Delta-G solvation = -4020.764235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.69945 -39.48214 -37.49134 -36.01818 -35.84089 -35.01641 -34.38174 -32.49524 -31.62382 -31.50843 -29.02559 -28.09925 -26.49959 -23.65200 -22.72587 -22.62802 -21.04274 -19.88483 -19.67644 -18.45889 -18.02659 -17.60332 -17.10410 -16.84988 -16.32426 -15.74370 -15.58774 -15.30006 -14.98929 -14.94195 -14.45097 -14.20920 -13.97584 -13.80781 -13.57385 -13.19336 -12.88814 -12.71040 -12.38908 -12.22565 -12.19290 -12.16275 -11.91849 -11.80758 -11.77895 -11.16625 -11.13578 -10.96590 -10.94462 -10.67993 -9.98347 -9.83978 -9.66884 -9.65480 -9.31382 -9.25520 -8.81735 -8.19389 -8.14473 -6.26510 -4.29660 0.19699 0.66138 1.21594 2.73997 3.02167 3.19744 3.24738 3.31703 3.34255 3.35626 3.60560 3.78715 4.18870 4.26393 4.55159 4.65912 4.84772 4.98654 5.06777 5.07407 5.23702 5.26524 5.30579 5.53404 5.55163 5.65531 5.91652 5.92024 5.98620 6.12908 6.15821 6.41371 6.60118 6.65192 6.75435 6.81453 6.89680 6.90923 7.15834 7.16539 7.22336 7.43099 8.04096 8.41751 8.66677 8.78533 9.33743 10.85374 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002979 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.266161 B = 9398.028242 C =10073.477832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.243 3.757 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.261 1.261 12 H -0.294 1.294 13 N -0.695 5.695 14 C 0.502 3.498 15 O -0.543 6.543 16 C 0.097 3.903 17 N -1.107 6.107 18 S 2.701 3.299 19 O -0.960 6.960 20 O -0.957 6.957 21 C -0.754 4.754 22 C 0.022 3.978 23 C -0.197 4.197 24 C -0.019 4.019 25 C -0.215 4.215 26 C 0.315 3.685 27 N -0.864 5.864 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.268 0.732 34 H 0.398 0.602 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.426 0.574 38 H 0.143 0.857 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.400 0.600 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.464 12.882 13.552 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.185 1.185 12 H -0.222 1.222 13 N -0.343 5.343 14 C 0.285 3.715 15 O -0.422 6.422 16 C -0.033 4.033 17 N -0.871 5.871 18 S 2.791 3.209 19 O -0.950 6.950 20 O -0.947 6.947 21 C -0.847 4.847 22 C 0.002 3.998 23 C -0.218 4.218 24 C -0.038 4.038 25 C -0.238 4.238 26 C 0.204 3.796 27 N -0.403 5.403 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.231 0.769 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.264 0.736 38 H 0.160 0.840 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.231 0.769 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -12.513 12.376 13.210 22.006 hybrid contribution 0.296 0.181 -1.063 1.118 sum -12.217 12.557 12.147 21.319 Atomic orbital electron populations 1.21887 0.96895 0.99228 1.02227 1.22301 0.94390 0.99872 1.01274 1.19192 0.95731 0.88559 0.82573 0.93189 1.21031 0.88512 1.40028 1.07934 0.90102 1.24829 0.94864 0.95090 0.97679 1.69861 1.08691 1.44359 1.29821 0.86900 0.80888 0.80015 0.80890 1.20201 1.18514 1.22173 1.46125 1.14491 1.55434 1.18272 1.20159 0.82947 0.79533 0.88818 1.90660 1.51407 1.60026 1.40128 1.21116 0.83519 0.99787 0.98910 1.55290 1.26729 1.80008 1.25043 1.01579 0.72881 0.73847 0.72566 1.93597 1.39290 1.81166 1.80971 1.93568 1.86355 1.51607 1.63191 1.30203 1.28982 1.16410 1.09152 1.20755 0.89003 0.98984 0.91042 1.21049 1.05171 0.93893 1.01702 1.21209 0.92783 0.97042 0.92805 1.20718 1.06134 0.98735 0.98235 1.17167 0.86546 0.92102 0.83805 1.42935 1.65304 1.15359 1.16680 0.92878 0.92885 0.94859 0.92711 0.92130 0.92224 0.76859 0.87473 0.88870 0.73575 0.83953 0.85299 0.85324 0.85287 0.76929 0.76117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.51 37.16 0.32 -2.50 16 2 C -0.14 -2.98 5.11 -26.73 -0.14 -3.12 16 3 C 0.24 5.42 1.83 -69.08 -0.13 5.30 16 4 H 0.05 1.24 6.64 -51.93 -0.34 0.89 16 5 C -0.54 -13.87 9.31 -34.45 -0.32 -14.19 16 6 H 0.08 2.19 7.98 -52.48 -0.42 1.77 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 9 Si 0.88 21.18 24.41 -169.99 -4.15 17.03 16 10 H -0.28 -6.43 6.83 56.52 0.39 -6.04 16 11 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 N -0.69 -12.40 5.02 -54.93 -0.28 -12.68 16 14 C 0.50 8.26 6.47 -10.99 -0.07 8.19 16 15 O -0.54 -10.47 12.87 5.56 0.07 -10.40 16 16 C 0.10 1.15 6.71 -5.19 -0.03 1.12 16 17 N -1.11 -12.91 5.35 -11.66 -0.06 -12.97 16 18 S 2.70 32.44 4.98 -107.50 -0.54 31.90 16 19 O -0.96 -13.42 16.51 -57.17 -0.94 -14.36 16 20 O -0.96 -13.63 16.44 -57.17 -0.94 -14.57 16 21 C -0.75 -8.06 5.89 -39.38 -0.23 -8.29 16 22 C 0.02 0.21 9.54 -39.61 -0.38 -0.17 16 23 C -0.20 -1.61 10.04 -39.55 -0.40 -2.01 16 24 C -0.02 -0.15 10.04 -39.61 -0.40 -0.54 16 25 C -0.22 -1.79 9.90 -39.38 -0.39 -2.18 16 26 C 0.31 3.09 6.72 -83.79 -0.56 2.53 16 27 N -0.86 -7.31 8.83 32.41 0.29 -7.02 16 28 H 0.05 1.00 5.65 -51.93 -0.29 0.71 16 29 H 0.05 1.08 7.85 -51.93 -0.41 0.68 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.24 3.21 -51.93 -0.17 1.07 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.40 6.11 8.54 -40.82 -0.35 5.76 16 35 H 0.11 1.13 7.74 -51.93 -0.40 0.72 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.43 5.00 7.69 -34.47 -0.27 4.73 16 38 H 0.14 1.24 7.33 -52.48 -0.38 0.85 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.40 3.62 5.94 -40.82 -0.24 3.38 16 43 H 0.41 2.37 8.85 -40.82 -0.36 2.01 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -34.52 358.69 -8.55 -43.07 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -5.36 Total: 13.34 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.83 Total: -13.81 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.72 Total: -57.61 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.81 Total: -39.33 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.15 Total: 17.03 kcal Atomic # 16 Polarization: 32.44 SS G_CDS: -0.54 Total: 31.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.52 -8.55 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.780 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds