Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46965 * 2 1 4 4 H 1.09004 * 109.47331 * 305.00014 * 3 2 1 5 5 C 1.50695 * 109.47128 * 184.99901 * 3 2 1 6 6 H 1.08003 * 120.00090 * 239.99870 * 5 3 2 7 7 C 1.37871 * 120.00190 * 60.00045 * 5 3 2 8 8 N 1.31513 * 120.00298 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.47428 * 270.00364 * 9 7 5 11 11 H 1.48504 * 109.46897 * 30.00300 * 9 7 5 12 12 H 1.48499 * 109.47409 * 149.99779 * 9 7 5 13 13 N 1.46509 * 109.47219 * 64.99648 * 3 2 1 14 14 C 1.34775 * 120.00091 * 275.00189 * 13 3 2 15 15 O 1.21280 * 119.99759 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99949 * 179.97438 * 14 13 3 17 17 N 1.46499 * 109.47214 * 180.02562 * 16 14 13 18 18 S 1.65596 * 120.00339 * 164.22407 * 17 16 14 19 19 O 1.42092 * 106.40372 * 178.28436 * 18 17 16 20 20 O 1.42108 * 106.39936 * 311.20636 * 18 17 16 21 21 C 1.76201 * 107.21858 * 64.74131 * 18 17 16 22 22 C 1.38121 * 120.04169 * 244.12609 * 21 18 17 23 23 C 1.38268 * 120.07542 * 179.97438 * 22 21 18 24 24 C 1.38300 * 120.15016 * 0.04902 * 23 22 21 25 25 C 1.38090 * 120.07648 * 359.97175 * 24 23 22 26 26 C 1.38890 * 120.03257 * 63.84863 * 21 18 17 27 27 N 1.39673 * 120.07710 * 0.02591 * 26 21 18 28 28 H 1.08997 * 109.47578 * 299.99856 * 1 2 3 29 29 H 1.09003 * 109.47345 * 60.00578 * 1 2 3 30 30 H 1.09001 * 109.46757 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47127 * 239.99596 * 2 1 3 32 32 H 1.09005 * 109.46956 * 120.00083 * 2 1 3 33 33 H 0.97003 * 120.00439 * 180.02562 * 8 7 5 34 34 H 0.96996 * 119.99484 * 94.99900 * 13 3 2 35 35 H 1.09004 * 109.46715 * 299.99585 * 16 14 13 36 36 H 1.08996 * 109.47104 * 59.99498 * 16 14 13 37 37 H 0.97007 * 119.99684 * 344.22510 * 17 16 14 38 38 H 1.08003 * 119.95889 * 359.97438 * 22 21 18 39 39 H 1.07998 * 119.92441 * 180.02562 * 23 22 21 40 40 H 1.07996 * 119.96323 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.03701 * 180.02562 * 25 24 23 42 42 H 0.97003 * 120.00098 * 353.72276 * 27 26 21 43 43 H 0.97003 * 120.00346 * 173.72497 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8796 -1.3357 9 14 3.0965 0.1088 -2.5700 10 1 2.8756 -1.3272 -2.2634 11 1 1.7877 0.8073 -2.6387 12 1 3.7937 0.2348 -3.8751 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3393 2.6326 0.4340 16 6 0.0361 3.3377 2.6548 17 7 -1.3229 3.8698 2.5271 18 16 -2.1703 4.3100 3.8799 19 8 -3.4174 4.8169 3.4250 20 8 -2.0580 3.2274 4.7936 21 6 -1.3179 5.6680 4.6105 22 6 -0.7561 5.5374 5.8656 23 6 -0.0866 6.6024 6.4393 24 6 0.0222 7.8020 5.7597 25 6 -0.5375 7.9396 4.5048 26 6 -1.2052 6.8693 3.9226 27 7 -1.7675 7.0032 2.6511 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8771 0.4818 -2.1126 34 1 2.2718 2.1232 1.9978 35 1 0.0670 2.6129 3.4684 36 1 0.7274 4.1529 2.8679 37 1 -1.7262 3.9643 1.6499 38 1 -0.8399 4.6022 6.3993 39 1 0.3521 6.4974 7.4206 40 1 0.5454 8.6320 6.2108 41 1 -0.4518 8.8765 3.9745 42 1 -2.1573 6.2325 2.2095 43 1 -1.7683 7.8669 2.2096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = -108.987285 kcal Electronic energy + Delta-G solvation = -27966.164961 eV Core-core repulsion = 23944.137430 eV Total energy + Delta-G solvation = -4022.027531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89942 -40.33046 -38.49108 -37.36638 -37.03750 -35.87127 -35.35098 -34.39931 -33.24710 -32.15719 -29.75107 -29.65070 -27.83112 -24.53614 -24.31930 -23.28634 -22.57680 -21.29963 -20.71312 -19.54238 -19.06931 -18.52101 -18.26463 -17.75945 -17.63228 -17.12639 -16.92374 -16.57028 -16.13522 -15.66902 -15.60071 -15.18780 -15.09158 -14.83888 -14.69347 -14.41881 -14.40530 -13.90749 -13.73413 -13.50299 -13.45392 -13.23694 -13.20425 -13.16081 -12.92060 -12.75934 -12.40328 -12.38390 -11.84611 -11.81660 -11.69714 -11.38386 -11.22007 -10.88434 -10.84779 -10.60749 -10.33358 -9.77394 -8.78759 -8.36677 -6.41791 -0.71539 -0.02416 0.57419 1.28319 1.36390 1.45130 1.70932 1.82555 2.26740 2.44924 2.55713 2.68674 2.79698 2.99539 3.32591 3.69191 3.86932 4.11759 4.23082 4.27065 4.32626 4.36095 4.39796 4.46344 4.48561 4.61110 4.66476 4.86820 4.93462 5.02280 5.03353 5.13529 5.24080 5.33229 5.42026 5.53330 5.55694 5.64818 5.81154 5.87297 6.15059 6.25214 6.60095 6.61121 6.86306 7.20517 7.42649 8.78266 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002979 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.266161 B = 9398.028242 C =10073.477832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 C 0.250 3.750 4 H 0.027 0.973 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.030 3.970 8 N -0.933 5.933 9 Si 0.934 3.066 10 H -0.263 1.263 11 H -0.259 1.259 12 H -0.296 1.296 13 N -0.696 5.696 14 C 0.502 3.498 15 O -0.572 6.572 16 C 0.103 3.897 17 N -1.107 6.107 18 S 2.716 3.284 19 O -0.985 6.985 20 O -0.983 6.983 21 C -0.764 4.764 22 C 0.004 3.996 23 C -0.199 4.199 24 C -0.017 4.017 25 C -0.221 4.221 26 C 0.300 3.700 27 N -0.864 5.864 28 H 0.056 0.944 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.269 0.731 34 H 0.410 0.590 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.426 0.574 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.396 0.604 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.069 13.854 14.870 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.044 0.956 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.762 3.238 10 H -0.189 1.189 11 H -0.183 1.183 12 H -0.224 1.224 13 N -0.346 5.346 14 C 0.288 3.712 15 O -0.452 6.452 16 C -0.026 4.026 17 N -0.870 5.870 18 S 2.810 3.190 19 O -0.975 6.975 20 O -0.973 6.973 21 C -0.861 4.861 22 C -0.015 4.015 23 C -0.220 4.220 24 C -0.036 4.036 25 C -0.244 4.244 26 C 0.189 3.811 27 N -0.403 5.403 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.246 0.754 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.264 0.736 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.177 0.823 41 H 0.168 0.832 42 H 0.226 0.774 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -13.148 13.341 14.543 23.714 hybrid contribution 0.514 0.013 -1.379 1.471 sum -12.634 13.354 13.164 22.611 Atomic orbital electron populations 1.21786 0.95265 1.00552 1.01726 1.22235 0.95784 0.98689 1.01094 1.18796 0.93197 0.89572 0.83945 0.95564 1.21299 0.90375 1.38382 1.06882 0.92186 1.25515 0.95639 0.95945 0.99843 1.69970 1.10241 1.46224 1.30813 0.86068 0.79396 0.79892 0.78416 1.18901 1.18333 1.22361 1.45922 1.15625 1.55768 1.17246 1.20811 0.81828 0.78635 0.89961 1.90652 1.52054 1.60828 1.41650 1.21185 0.84091 1.00889 0.96479 1.55211 1.26569 1.80282 1.24934 1.00858 0.72504 0.73696 0.71991 1.93559 1.41009 1.81518 1.81393 1.93527 1.86757 1.53206 1.63826 1.29891 1.30338 1.15938 1.09886 1.20951 0.89701 0.99946 0.90942 1.21389 1.04394 0.93587 1.02621 1.21640 0.91937 0.97687 0.92368 1.21075 1.05526 0.99093 0.98739 1.17413 0.87091 0.92392 0.84238 1.42981 1.64993 1.15847 1.16475 0.92475 0.94284 0.92594 0.93964 0.91185 0.92160 0.75390 0.85582 0.85928 0.73612 0.83644 0.83059 0.82280 0.83157 0.77414 0.74845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 8.51 71.98 0.61 -4.43 16 2 C -0.14 -5.76 5.11 30.59 0.16 -5.60 16 3 C 0.25 11.04 1.83 44.24 0.08 11.12 16 4 H 0.03 1.30 6.64 -2.38 -0.02 1.29 16 5 C -0.53 -27.60 9.31 25.60 0.24 -27.36 16 6 H 0.06 3.30 7.98 -2.91 -0.02 3.28 16 7 C 0.03 1.66 5.45 84.65 0.46 2.12 16 8 N -0.93 -54.71 13.96 21.44 0.30 -54.41 16 9 Si 0.93 43.73 24.41 68.60 1.67 45.40 16 10 H -0.26 -11.70 6.83 99.48 0.68 -11.02 16 11 H -0.26 -11.93 6.53 99.48 0.65 -11.28 16 12 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 13 N -0.70 -24.09 5.02 -446.09 -2.24 -26.33 16 14 C 0.50 15.85 6.47 87.66 0.57 16.41 16 15 O -0.57 -21.58 12.87 -3.03 -0.04 -21.62 16 16 C 0.10 2.26 6.71 85.63 0.57 2.83 16 17 N -1.11 -24.62 5.35 -190.79 -1.02 -25.64 16 18 S 2.72 63.40 4.98 -56.49 -0.28 63.12 16 19 O -0.98 -27.40 16.51 -128.00 -2.11 -29.51 16 20 O -0.98 -27.34 16.44 -128.00 -2.10 -29.45 16 21 C -0.76 -15.30 5.89 22.40 0.13 -15.17 16 22 C 0.00 0.08 9.54 22.25 0.21 0.29 16 23 C -0.20 -2.71 10.04 22.29 0.22 -2.48 16 24 C -0.02 -0.21 10.04 22.25 0.22 0.02 16 25 C -0.22 -3.08 9.90 22.40 0.22 -2.86 16 26 C 0.30 5.37 6.72 38.22 0.26 5.63 16 27 N -0.86 -13.56 8.83 -51.37 -0.45 -14.01 16 28 H 0.06 2.05 5.65 -2.39 -0.01 2.04 16 29 H 0.04 1.54 7.85 -2.39 -0.02 1.52 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.04 1.85 3.21 -2.39 -0.01 1.84 16 32 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 33 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.41 12.08 8.54 -92.71 -0.79 11.29 16 35 H 0.13 2.35 7.74 -2.38 -0.02 2.33 16 36 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.43 9.75 7.69 -96.74 -0.74 9.01 16 38 H 0.15 2.36 7.33 -2.91 -0.02 2.34 16 39 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 41 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.40 6.90 5.94 -92.71 -0.55 6.35 16 43 H 0.42 4.29 8.85 -92.71 -0.82 3.47 16 Total: -1.00 -74.33 358.69 -4.21 -78.53 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -1.89 Total: 33.38 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 3.96 Total: -19.47 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -3.41 Total: -120.38 kcal Atomic # 8 Polarization: -76.32 SS G_CDS: -4.26 Total: -80.58 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.67 Total: 45.40 kcal Atomic # 16 Polarization: 63.40 SS G_CDS: -0.28 Total: 63.12 kcal Total: -74.33 -4.21 -78.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.454 kcal (2) G-P(sol) polarization free energy of solvation -74.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds