Wall clock time and date at job start Sat Apr 11 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50705 * 109.46851 * 2 1 4 4 C 1.33528 * 125.97414 * 89.99620 * 3 2 1 5 5 N 1.31904 * 114.56918 * 179.97438 * 4 3 2 6 6 C 1.29686 * 116.92519 * 0.02562 * 5 4 3 7 7 N 1.38745 * 124.94173 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00145 * 359.97301 * 7 6 5 9 9 O 1.21382 * 120.00063 * 0.02562 * 8 7 6 10 10 C 1.49317 * 119.99628 * 179.97438 * 8 7 6 11 11 O 1.21364 * 119.99972 * 354.24880 * 10 8 7 12 12 N 1.34780 * 119.99434 * 174.24797 * 10 8 7 13 13 C 1.46503 * 120.00059 * 4.01916 * 12 10 8 14 14 C 1.50703 * 109.47064 * 83.06788 * 13 12 10 15 15 H 1.08002 * 119.99844 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00103 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00531 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00027 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47021 * 90.00000 * 18 16 14 20 20 H 1.48500 * 109.47478 * 210.00430 * 18 16 14 21 21 H 1.48499 * 109.46972 * 330.00150 * 18 16 14 22 22 C 1.46492 * 119.99597 * 184.01911 * 12 10 8 23 23 C 1.53002 * 109.47197 * 89.99924 * 22 12 10 24 24 O 1.42905 * 109.46708 * 65.00257 * 23 22 12 25 25 C 1.42908 * 113.99747 * 180.02562 * 24 23 22 26 26 S 1.70969 * 110.11242 * 359.74261 * 6 5 4 27 27 H 1.09004 * 109.46681 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47046 * 60.00233 * 1 2 3 29 29 H 1.08997 * 109.47046 * 299.99985 * 1 2 3 30 30 H 1.08994 * 109.47046 * 119.99767 * 2 1 3 31 31 H 1.08997 * 109.47046 * 240.00015 * 2 1 3 32 32 H 1.08004 * 122.71401 * 359.96464 * 4 3 2 33 33 H 0.97005 * 119.99940 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.46941 * 203.06565 * 13 12 10 35 35 H 1.09001 * 109.47212 * 323.06719 * 13 12 10 36 36 H 0.96998 * 120.00588 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47568 * 210.00073 * 22 12 10 38 38 H 1.09003 * 109.47593 * 329.99725 * 22 12 10 39 39 H 1.09001 * 109.47550 * 184.99554 * 23 22 12 40 40 H 1.08990 * 109.47204 * 305.00091 * 23 22 12 41 41 H 1.08996 * 109.47211 * 59.99313 * 25 24 23 42 42 H 1.08992 * 109.46861 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.46153 * 299.99217 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2937 2.1604 1.0806 5 7 2.7252 3.3793 0.8198 6 6 2.8409 3.7065 -0.4298 7 7 3.2770 4.9402 -0.8911 8 6 3.6177 5.9055 -0.0144 9 8 3.5434 5.6954 1.1788 10 6 4.0876 7.2329 -0.5111 11 8 4.2626 7.4091 -1.6990 12 7 4.3173 8.2354 0.3600 13 6 4.1912 7.9978 1.8001 14 6 5.4672 7.3895 2.3225 15 1 6.2899 7.1993 1.6492 16 6 5.5847 7.0767 3.6601 17 7 6.6983 6.5463 4.1162 18 14 4.1624 7.4075 4.8251 19 1 3.2790 6.2151 4.8789 20 1 4.6910 7.6937 6.1830 21 1 3.3865 8.5769 4.3394 22 6 4.6931 9.5626 -0.1333 23 6 3.4315 10.3964 -0.3656 24 8 2.7773 10.6286 0.8835 25 6 1.5804 11.4022 0.7778 26 16 2.3838 2.3942 -1.4258 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.1623 1.7906 2.0868 33 1 3.3367 5.1079 -1.8447 34 1 4.0043 8.9432 2.3094 35 1 3.3613 7.3155 1.9845 36 1 6.7811 6.3266 5.0573 37 1 5.3257 10.0583 0.6031 38 1 5.2390 9.4605 -1.0712 39 1 3.7044 11.3509 -0.8157 40 1 2.7587 9.8589 -1.0337 41 1 0.8693 10.8852 0.1335 42 1 1.1442 11.5337 1.7679 43 1 1.8148 12.3776 0.3512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617324069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:10 Heat of formation + Delta-G solvation = -63.614690 kcal Electronic energy + Delta-G solvation = -27903.213817 eV Core-core repulsion = 23883.153789 eV Total energy + Delta-G solvation = -4020.060028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.14777 -40.82015 -39.53519 -38.71262 -37.32298 -36.04641 -34.66883 -34.56632 -31.68810 -29.77221 -29.40202 -27.57653 -26.92975 -25.40531 -24.41038 -24.13834 -23.12316 -21.58054 -20.55284 -19.48263 -19.15692 -18.20556 -18.11604 -17.57124 -17.26779 -17.01207 -16.86855 -16.47052 -16.02877 -15.89130 -15.70608 -15.62300 -15.14070 -14.90300 -14.68986 -14.51787 -14.45753 -13.90691 -13.57069 -13.41311 -13.25838 -12.91448 -12.82368 -12.67812 -12.64767 -12.45277 -12.28382 -12.08218 -11.96294 -11.83627 -11.73129 -11.66911 -10.93485 -10.71906 -10.61456 -10.23628 -10.09894 -9.65975 -9.21882 -8.28177 -6.29083 -0.42539 -0.14311 0.48104 0.59986 1.29877 1.36842 1.40250 1.45951 1.82293 2.23056 2.35079 2.36921 2.89232 3.10270 3.12549 3.69369 3.91318 4.07254 4.14013 4.15137 4.36121 4.44811 4.50204 4.52371 4.57669 4.58655 4.68185 4.76878 4.83345 4.84753 4.88188 5.05464 5.08121 5.17363 5.24727 5.39201 5.41608 5.50290 5.71549 6.03579 6.24169 6.34065 6.53229 6.67621 6.86694 7.02067 7.33299 8.88902 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.003830 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.626528 B = 7308.685787 C = 8684.979006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.224 4.224 4 C 0.037 3.963 5 N -0.522 5.522 6 C 0.233 3.767 7 N -0.609 5.609 8 C 0.484 3.516 9 O -0.439 6.439 10 C 0.513 3.487 11 O -0.550 6.550 12 N -0.552 5.552 13 C 0.216 3.784 14 C -0.514 4.514 15 H 0.028 0.972 16 C 0.025 3.975 17 N -0.946 5.946 18 Si 0.936 3.064 19 H -0.281 1.281 20 H -0.278 1.278 21 H -0.241 1.241 22 C 0.107 3.893 23 C 0.055 3.945 24 O -0.415 6.415 25 C 0.027 3.973 26 S 0.197 5.803 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.183 0.817 33 H 0.440 0.560 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.265 0.735 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.088 -5.117 -13.900 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.346 4.346 4 C -0.113 4.113 5 N -0.244 5.244 6 C -0.133 4.133 7 N -0.265 5.265 8 C 0.263 3.737 9 O -0.304 6.304 10 C 0.295 3.705 11 O -0.432 6.432 12 N -0.281 5.281 13 C 0.094 3.906 14 C -0.553 4.553 15 H 0.046 0.954 16 C -0.173 4.173 17 N -0.587 5.587 18 Si 0.760 3.240 19 H -0.207 1.207 20 H -0.204 1.204 21 H -0.164 1.164 22 C -0.014 4.014 23 C -0.022 4.022 24 O -0.334 6.334 25 C -0.069 4.069 26 S 0.448 5.552 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.200 0.800 33 H 0.281 0.719 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.751 -4.878 -13.957 20.885 hybrid contribution -0.029 0.040 1.271 1.272 sum -14.780 -4.837 -12.686 20.069 Atomic orbital electron populations 1.21805 0.93490 1.03096 1.02035 1.20132 0.96570 0.86416 1.04877 1.26317 1.11216 1.03835 0.93254 1.21748 1.00740 0.87318 1.01469 1.66506 1.19772 1.20065 1.18027 1.23807 1.03470 0.92966 0.93097 1.42582 1.63702 1.08532 1.11635 1.20691 0.79973 0.86351 0.86707 1.90948 1.44886 1.79019 1.15574 1.19620 0.79852 0.84968 0.86054 1.90642 1.54373 1.82890 1.15250 1.47848 1.62316 1.09741 1.08217 1.20016 0.97001 0.97517 0.76051 1.21303 0.99152 1.40819 0.94016 0.95405 1.25531 0.97904 0.94060 0.99794 1.70029 1.28262 1.45029 1.15400 0.85881 0.79999 0.79754 0.78324 1.20702 1.20377 1.16378 1.21882 0.96872 0.80566 1.02100 1.22967 0.93609 0.99648 0.86014 1.87975 1.40395 1.74339 1.30718 1.22893 0.85977 0.94845 1.03190 1.83358 1.61845 1.01858 1.08157 0.89982 0.92695 0.93120 0.88433 0.88915 0.80005 0.71873 0.93524 0.92887 0.92619 0.89094 0.87253 0.88805 0.93258 0.93799 0.89363 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.90 71.99 0.71 -1.06 16 2 C -0.04 -0.55 6.47 29.85 0.19 -0.36 16 3 C -0.22 -4.97 5.84 24.62 0.14 -4.82 16 4 C 0.04 1.12 11.24 83.61 0.94 2.06 16 5 N -0.52 -20.47 8.64 -201.92 -1.74 -22.21 16 6 C 0.23 7.83 8.01 179.28 1.44 9.26 16 7 N -0.61 -20.93 5.39 -315.12 -1.70 -22.63 16 8 C 0.48 20.98 7.72 87.23 0.67 21.66 16 9 O -0.44 -22.78 11.01 -3.35 -0.04 -22.82 16 10 C 0.51 21.48 7.66 87.23 0.67 22.14 16 11 O -0.55 -21.49 16.04 -3.29 -0.05 -21.55 16 12 N -0.55 -23.67 2.44 -827.88 -2.02 -25.69 16 13 C 0.22 10.82 3.59 85.63 0.31 11.13 16 14 C -0.51 -30.84 8.88 25.60 0.23 -30.62 16 15 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 16 C 0.02 1.53 5.47 84.65 0.46 1.99 16 17 N -0.95 -61.85 13.96 21.44 0.30 -61.55 16 18 Si 0.94 47.66 27.47 68.60 1.88 49.55 16 19 H -0.28 -14.67 7.11 99.48 0.71 -13.97 16 20 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.24 -11.25 6.54 99.48 0.65 -10.60 16 22 C 0.11 3.64 5.81 86.38 0.50 4.14 16 23 C 0.05 1.50 6.28 71.98 0.45 1.96 16 24 O -0.41 -13.01 9.66 -148.98 -1.44 -14.45 16 25 C 0.03 0.59 11.01 113.37 1.25 1.84 16 26 S 0.20 4.31 23.22 -56.49 -1.31 3.00 16 27 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.18 4.85 8.06 -2.91 -0.02 4.83 16 33 H 0.44 11.92 8.30 -92.70 -0.77 11.15 16 34 H 0.05 2.31 6.32 -2.39 -0.02 2.29 16 35 H 0.05 2.83 4.83 -2.40 -0.01 2.82 16 36 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 37 H 0.09 3.16 8.07 -2.39 -0.02 3.14 16 38 H 0.11 3.38 7.37 -2.39 -0.02 3.36 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 41 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -82.56 377.20 2.07 -80.50 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.22 Total: 18.53 kcal Atomic # 6 Polarization: 31.36 SS G_CDS: 7.97 Total: 39.33 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -5.16 Total: -132.08 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: -1.53 Total: -58.82 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.88 Total: 49.55 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.31 Total: 3.00 kcal Total: -82.56 2.07 -80.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617324069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.882 kcal (2) G-P(sol) polarization free energy of solvation -82.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds