Wall clock time and date at job start Sat Apr 11 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50706 * 109.47180 * 2 1 4 4 C 1.33522 * 122.71754 * 124.95269 * 3 2 1 5 5 S 1.76180 * 108.05654 * 180.02562 * 4 3 2 6 6 C 1.70969 * 90.33652 * 0.02562 * 5 4 3 7 7 N 1.38749 * 124.94350 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99899 * 0.02562 * 7 6 5 9 9 O 1.21388 * 119.99994 * 0.02562 * 8 7 6 10 10 C 1.49312 * 120.00093 * 180.02562 * 8 7 6 11 11 O 1.21369 * 119.99600 * 354.25027 * 10 8 7 12 12 N 1.34773 * 120.00080 * 174.24822 * 10 8 7 13 13 C 1.46501 * 119.99802 * 4.02367 * 12 10 8 14 14 C 1.50698 * 109.47567 * 83.06925 * 13 12 10 15 15 H 1.08002 * 119.99722 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00139 * 180.02562 * 14 13 12 17 17 N 1.31507 * 119.99972 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99998 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47156 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47428 * 119.99519 * 18 16 14 21 21 H 1.48500 * 109.47087 * 239.99692 * 18 16 14 22 22 C 1.46493 * 119.99922 * 184.02011 * 12 10 8 23 23 C 1.53003 * 109.47191 * 90.00096 * 22 12 10 24 24 O 1.42898 * 109.47093 * 64.99850 * 23 22 12 25 25 C 1.42900 * 114.00093 * 179.97438 * 24 23 22 26 26 N 1.29686 * 110.11283 * 0.02562 * 6 5 4 27 27 H 1.09006 * 109.47153 * 299.99935 * 1 2 3 28 28 H 1.08999 * 109.47306 * 60.00325 * 1 2 3 29 29 H 1.08998 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47153 * 240.00065 * 2 1 3 31 31 H 1.09000 * 109.47704 * 120.00037 * 2 1 3 32 32 H 1.08004 * 125.97612 * 0.04109 * 4 3 2 33 33 H 0.96994 * 119.99830 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.46811 * 203.06828 * 13 12 10 35 35 H 1.09005 * 109.47296 * 323.06475 * 13 12 10 36 36 H 0.97008 * 120.00147 * 180.02562 * 17 16 14 37 37 H 1.09010 * 109.47161 * 209.99947 * 22 12 10 38 38 H 1.09003 * 109.47445 * 329.99947 * 22 12 10 39 39 H 1.09002 * 109.47184 * 184.99674 * 23 22 12 40 40 H 1.08999 * 109.46919 * 305.00011 * 23 22 12 41 41 H 1.08998 * 109.46768 * 299.99900 * 25 24 23 42 42 H 1.09000 * 109.46943 * 60.00251 * 25 24 23 43 43 H 1.08995 * 109.47141 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8796 1.8867 0.9207 5 16 3.2064 3.5791 0.5557 6 6 2.1698 3.4969 -0.8015 7 7 1.9026 4.5516 -1.6624 8 6 2.4795 5.7522 -1.4565 9 8 3.2331 5.9106 -0.5182 10 6 2.1915 6.8875 -2.3826 11 8 1.5224 6.7035 -3.3784 12 7 2.6744 8.1164 -2.1128 13 6 3.5544 8.3206 -0.9594 14 6 4.9683 7.9604 -1.3363 15 1 5.1893 7.6136 -2.3349 16 6 5.9796 8.0725 -0.4059 17 7 5.7104 8.4944 0.8103 18 14 7.7322 7.6253 -0.8728 19 1 7.7690 7.1812 -2.2894 20 1 8.6080 8.8124 -0.7029 21 1 8.2126 6.5263 0.0027 22 6 2.3195 9.2480 -2.9728 23 6 1.0466 9.9116 -2.4431 24 8 1.3052 10.4801 -1.1579 25 6 0.1752 11.1287 -0.5711 26 7 1.6689 2.3055 -0.9085 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.2928 1.3244 1.7451 33 1 1.3007 4.4249 -2.4123 34 1 3.5151 9.3660 -0.6531 35 1 3.2256 7.6878 -0.1350 36 1 6.4220 8.5737 1.4648 37 1 3.1336 9.9729 -2.9740 38 1 2.1481 8.8925 -3.9888 39 1 0.7328 10.6966 -3.1312 40 1 0.2564 9.1656 -2.3581 41 1 -0.1562 11.9390 -1.2205 42 1 -0.6334 10.4083 -0.4473 43 1 0.4532 11.5330 0.4021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619076585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:18 Heat of formation + Delta-G solvation = -68.228421 kcal Electronic energy + Delta-G solvation = -27916.363946 eV Core-core repulsion = 23896.103852 eV Total energy + Delta-G solvation = -4020.260094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.20905 -40.90943 -39.86997 -38.71708 -37.29177 -36.01286 -34.56312 -33.82514 -31.50351 -30.27372 -29.02285 -27.56514 -26.79627 -25.52300 -24.79471 -24.13302 -23.00698 -21.96760 -20.17980 -19.23159 -18.81127 -18.36686 -18.06989 -17.54556 -17.29715 -17.06532 -16.92613 -16.46912 -16.15873 -16.06345 -15.75277 -15.41680 -15.07582 -14.88996 -14.52821 -14.31189 -14.20946 -13.72526 -13.51391 -13.39659 -13.21078 -12.92911 -12.81818 -12.74144 -12.69901 -12.40507 -12.17763 -12.10506 -11.85888 -11.82994 -11.67523 -11.59205 -10.78573 -10.72488 -10.60015 -10.25773 -10.20923 -9.65412 -9.26797 -8.10775 -6.20236 -0.41593 0.12153 0.38900 0.84440 1.11873 1.39607 1.42114 1.51479 1.71794 2.12436 2.32826 2.48324 2.92694 3.19868 3.23196 3.48776 4.09893 4.13617 4.16180 4.32760 4.37628 4.44578 4.51411 4.53617 4.58191 4.58368 4.65448 4.78696 4.83242 4.86176 4.98248 5.06727 5.16835 5.27027 5.41214 5.43910 5.48016 5.69975 5.82153 6.13774 6.20849 6.33843 6.47114 6.70957 6.80574 6.93705 7.46018 8.97255 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009547 B = 0.004144 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.267734 B = 6755.416871 C = 8681.985907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C 0.076 3.924 4 C -0.308 4.308 5 S 0.209 5.791 6 C 0.231 3.769 7 N -0.598 5.598 8 C 0.489 3.511 9 O -0.448 6.448 10 C 0.515 3.485 11 O -0.553 6.553 12 N -0.551 5.551 13 C 0.248 3.752 14 C -0.528 4.528 15 H 0.046 0.954 16 C 0.027 3.973 17 N -0.915 5.915 18 Si 0.946 3.054 19 H -0.272 1.272 20 H -0.275 1.275 21 H -0.282 1.282 22 C 0.109 3.891 23 C 0.052 3.948 24 O -0.412 6.412 25 C 0.028 3.972 26 N -0.516 5.516 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.204 0.796 33 H 0.435 0.565 34 H 0.027 0.973 35 H 0.050 0.950 36 H 0.263 0.737 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.896 -8.251 -1.638 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 C -0.056 4.056 4 C -0.448 4.448 5 S 0.460 5.540 6 C -0.135 4.135 7 N -0.251 5.251 8 C 0.269 3.731 9 O -0.317 6.317 10 C 0.297 3.703 11 O -0.435 6.435 12 N -0.280 5.280 13 C 0.128 3.872 14 C -0.567 4.567 15 H 0.064 0.936 16 C -0.173 4.173 17 N -0.555 5.555 18 Si 0.772 3.228 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.208 1.208 22 C -0.013 4.013 23 C -0.025 4.025 24 O -0.332 6.332 25 C -0.068 4.068 26 N -0.240 5.240 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.221 0.779 33 H 0.276 0.724 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.157 -7.313 -1.240 12.577 hybrid contribution 0.230 -0.764 -0.537 0.962 sum -9.927 -8.077 -1.777 12.920 Atomic orbital electron populations 1.21642 0.94190 1.02522 1.01467 1.20268 0.96706 0.86951 1.04364 1.20396 0.96941 0.97712 0.90576 1.27605 1.08739 0.99994 1.08459 1.85659 1.41561 1.06902 1.19916 1.23445 1.01288 0.90854 0.97958 1.42351 1.46727 1.06660 1.29351 1.20776 0.81490 0.83927 0.86860 1.90905 1.31566 1.79885 1.29298 1.19264 0.81539 0.84026 0.85518 1.90675 1.41307 1.83795 1.27694 1.48169 1.44400 1.06204 1.29226 1.19587 0.87141 0.97445 0.83059 1.21477 0.93204 1.44705 0.97294 0.93621 1.25469 1.02168 0.94990 0.94691 1.70035 1.33778 1.47253 1.04401 0.85700 0.80847 0.78047 0.78207 1.19700 1.20078 1.20771 1.21854 0.97757 0.87245 0.94411 1.22979 0.96627 0.97307 0.85557 1.88018 1.36800 1.74471 1.33874 1.22870 0.88402 0.96492 0.99042 1.66122 1.28672 0.99208 1.30020 0.93407 0.93627 0.90161 0.89805 0.87719 0.77879 0.72400 0.95480 0.93267 0.92785 0.89011 0.87190 0.88984 0.93612 0.92078 0.93943 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.81 71.98 0.71 -1.76 16 2 C -0.04 -0.78 6.43 29.85 0.19 -0.59 16 3 C 0.08 2.01 6.08 41.48 0.25 2.26 16 4 C -0.31 -7.97 11.05 66.75 0.74 -7.23 16 5 S 0.21 7.17 20.21 -56.49 -1.14 6.03 16 6 C 0.23 8.00 8.18 179.27 1.47 9.47 16 7 N -0.60 -20.84 5.39 -315.11 -1.70 -22.54 16 8 C 0.49 19.87 7.73 87.23 0.67 20.54 16 9 O -0.45 -20.85 9.84 -3.37 -0.03 -20.89 16 10 C 0.51 20.85 7.66 87.23 0.67 21.52 16 11 O -0.55 -21.53 16.04 -3.31 -0.05 -21.58 16 12 N -0.55 -23.00 2.44 -827.88 -2.02 -25.02 16 13 C 0.25 12.45 4.53 85.63 0.39 12.84 16 14 C -0.53 -28.75 8.33 25.60 0.21 -28.54 16 15 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 16 C 0.03 1.49 5.46 84.66 0.46 1.95 16 17 N -0.92 -53.15 13.29 21.45 0.28 -52.86 16 18 Si 0.95 44.07 29.54 68.60 2.03 46.09 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 22 C 0.11 3.65 5.81 86.38 0.50 4.15 16 23 C 0.05 1.50 6.28 71.98 0.45 1.95 16 24 O -0.41 -13.77 9.66 -148.98 -1.44 -15.21 16 25 C 0.03 0.67 11.01 113.37 1.25 1.92 16 26 N -0.52 -16.32 10.39 -189.74 -1.97 -18.30 16 27 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.04 0.96 8.07 -2.39 -0.02 0.94 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.10 1.34 8.03 -2.39 -0.02 1.32 16 32 H 0.20 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.43 13.44 8.30 -92.71 -0.77 12.67 16 34 H 0.03 1.47 7.27 -2.38 -0.02 1.45 16 35 H 0.05 2.73 5.39 -2.40 -0.01 2.71 16 36 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 37 H 0.09 3.13 8.07 -2.38 -0.02 3.11 16 38 H 0.11 3.29 7.37 -2.39 -0.02 3.28 16 39 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 40 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -67.70 378.30 2.19 -65.51 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.27 Total: 20.27 kcal Atomic # 6 Polarization: 30.52 SS G_CDS: 7.96 Total: 38.49 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -5.40 Total: -118.71 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -1.53 Total: -57.68 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 7.17 SS G_CDS: -1.14 Total: 6.03 kcal Total: -67.70 2.19 -65.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619076585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.716 kcal (2) G-P(sol) polarization free energy of solvation -67.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds