Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29197 * 125.34719 * 2 1 4 4 N 1.40266 * 107.86573 * 180.15946 * 3 2 1 5 5 C 1.46505 * 126.63692 * 179.81807 * 4 3 2 6 6 C 1.50703 * 109.47064 * 269.68789 * 5 4 3 7 7 O 1.21401 * 119.99981 * 359.97438 * 6 5 4 8 8 C 1.41730 * 119.99864 * 179.97438 * 6 5 4 9 9 C 1.37861 * 126.91062 * 0.02774 * 8 6 5 10 10 N 1.34673 * 109.61582 * 180.02562 * 9 8 6 11 11 C 1.46497 * 124.64287 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.47264 * 265.02369 * 11 10 9 13 13 H 1.07996 * 119.99814 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00178 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00142 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99844 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47110 * 90.00327 * 16 14 12 18 18 H 1.48498 * 109.46856 * 210.00123 * 16 14 12 19 19 H 1.48499 * 109.47219 * 329.99696 * 16 14 12 20 20 C 1.38021 * 110.71285 * 359.97438 * 10 9 8 21 21 C 1.39138 * 133.04046 * 179.97438 * 20 10 9 22 22 C 1.37775 * 119.95099 * 179.97438 * 21 20 10 23 23 C 1.38720 * 120.63198 * 0.02939 * 22 21 20 24 24 C 1.37803 * 120.27488 * 359.97438 * 23 22 21 25 25 C 1.39196 * 119.66880 * 359.65202 * 24 23 22 26 26 C 1.35037 * 106.72714 * 359.55478 * 4 3 2 27 27 O 1.21710 * 126.37387 * 180.23978 * 26 4 3 28 28 O 1.34312 * 107.25332 * 0.26398 * 26 4 3 29 29 H 1.09004 * 109.47028 * 180.30635 * 1 2 3 30 30 H 1.08997 * 109.47403 * 300.30561 * 1 2 3 31 31 H 1.09004 * 109.47387 * 60.31171 * 1 2 3 32 32 H 1.09002 * 109.47068 * 29.68758 * 5 4 3 33 33 H 1.09001 * 109.47372 * 149.68845 * 5 4 3 34 34 H 1.07996 * 125.19165 * 359.95948 * 9 8 6 35 35 H 1.08997 * 109.47421 * 25.02013 * 11 10 9 36 36 H 1.08994 * 109.47260 * 145.02573 * 11 10 9 37 37 H 0.97001 * 119.99948 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.02513 * 0.02605 * 21 20 10 39 39 H 1.07995 * 119.68471 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.86369 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.16852 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2545 1.0538 0.0000 4 7 3.5923 0.6325 -0.0037 5 6 4.7793 1.4911 -0.0088 6 6 5.1863 1.7773 -1.4313 7 8 4.5473 1.3091 -2.3513 8 6 6.3150 2.5929 -1.6951 9 6 7.1377 3.1935 -0.7661 10 7 8.1020 3.8889 -1.3988 11 6 9.1540 4.6550 -0.7260 12 6 8.7302 6.0967 -0.6111 13 1 7.7729 6.4107 -0.9999 14 6 9.5647 7.0147 -0.0096 15 7 9.1952 8.2729 0.0902 16 14 11.2204 6.4713 0.6635 17 1 12.2521 6.5999 -0.3967 18 1 11.5895 7.3269 1.8197 19 1 11.1356 5.0553 1.1027 20 6 7.9634 3.7810 -2.7678 21 6 8.6849 4.2985 -3.8390 22 6 8.2998 4.0115 -5.1304 23 6 7.1954 3.2091 -5.3769 24 6 6.4681 2.6873 -4.3292 25 6 6.8510 2.9632 -3.0197 26 6 3.5746 -0.7178 0.0042 27 8 4.5450 -1.4524 0.0081 28 8 2.2868 -1.0992 0.0064 29 1 -0.3633 -1.0277 0.0055 30 1 -0.3634 0.5185 0.8872 31 1 -0.3634 0.5090 -0.8928 32 1 4.5521 2.4282 0.4996 33 1 5.5954 0.9861 0.5080 34 1 7.0253 3.1188 0.3054 35 1 9.3215 4.2451 0.2699 36 1 10.0756 4.5923 -1.3046 37 1 9.7822 8.9186 0.5137 38 1 9.5466 4.9240 -3.6584 39 1 8.8627 4.4158 -5.9587 40 1 6.9043 2.9925 -6.3941 41 1 5.6083 2.0632 -4.5230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000657278101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = 26.060811 kcal Electronic energy + Delta-G solvation = -28474.821674 eV Core-core repulsion = 24323.206317 eV Total energy + Delta-G solvation = -4151.615357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.52610 -41.18045 -38.89755 -37.98213 -36.80388 -36.13104 -33.66127 -33.24254 -32.16552 -30.70949 -30.00232 -28.87984 -28.05867 -26.76402 -23.96951 -23.15565 -22.76666 -22.31131 -21.55907 -20.44523 -19.00627 -17.98329 -17.71619 -17.35376 -16.74352 -16.57908 -16.25530 -15.95352 -15.25742 -15.14511 -14.91202 -14.69310 -14.45860 -14.18055 -13.94467 -13.78610 -13.48190 -13.27090 -13.18590 -12.80017 -12.74041 -12.41659 -12.23977 -12.19323 -12.13732 -12.04195 -11.70142 -11.32525 -11.10228 -10.97314 -10.90215 -10.55297 -10.29271 -9.85788 -9.77351 -9.16376 -8.98147 -8.90012 -7.89064 -7.28774 -6.45752 -4.52645 1.16142 1.36012 1.46408 1.82910 2.13243 2.19362 2.45569 3.00167 3.05798 3.09300 3.30976 3.45317 3.90865 4.03382 4.23059 4.31458 4.57681 4.81312 4.84585 4.92432 4.93213 5.05727 5.08275 5.12206 5.27429 5.31274 5.40219 5.44900 5.56418 5.66228 5.87912 5.94056 5.98010 6.14625 6.19021 6.24135 6.45594 6.79489 6.93871 7.02590 7.03353 7.16716 7.25065 7.41593 7.55279 7.58167 7.91627 8.06743 8.57817 9.08002 10.66039 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012180 B = 0.003012 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.337777 B = 9294.443362 C =10631.819406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.235 3.765 3 N -0.257 5.257 4 N -0.441 5.441 5 C 0.109 3.891 6 C 0.416 3.584 7 O -0.473 6.473 8 C -0.309 4.309 9 C 0.158 3.842 10 N -0.418 5.418 11 C 0.198 3.802 12 C -0.554 4.554 13 H 0.084 0.916 14 C 0.083 3.917 15 N -0.879 5.879 16 Si 0.873 3.127 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.264 1.264 20 C 0.086 3.914 21 C -0.100 4.100 22 C -0.118 4.118 23 C -0.139 4.139 24 C -0.082 4.082 25 C -0.054 4.054 26 C 0.610 3.390 27 O -0.485 6.485 28 O -0.273 6.273 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.178 0.822 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.271 0.729 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.459 -12.665 0.063 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.009 3.991 3 N -0.087 5.087 4 N -0.272 5.272 5 C -0.011 4.011 6 C 0.297 3.703 7 O -0.351 6.351 8 C -0.318 4.318 9 C 0.016 3.984 10 N -0.091 5.091 11 C 0.079 3.921 12 C -0.592 4.592 13 H 0.102 0.898 14 C -0.123 4.123 15 N -0.515 5.515 16 Si 0.698 3.302 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.189 1.189 20 C -0.018 4.018 21 C -0.119 4.119 22 C -0.138 4.138 23 C -0.158 4.158 24 C -0.101 4.101 25 C -0.057 4.057 26 C 0.362 3.638 27 O -0.366 6.366 28 O -0.170 6.170 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.195 0.805 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.812 -12.194 -0.199 16.298 hybrid contribution 1.167 -0.490 0.562 1.385 sum -9.645 -12.684 0.363 15.938 Atomic orbital electron populations 1.20495 0.79896 1.05856 1.05900 1.26516 0.96930 0.78897 0.96806 1.77135 0.88351 1.22002 1.21175 1.49451 1.03878 1.05202 1.68640 1.22117 0.83418 0.96068 0.99529 1.20117 0.82645 0.77929 0.89593 1.90521 1.51915 1.45770 1.46903 1.19345 1.04489 1.15328 0.92647 1.22542 0.87363 0.90303 0.98148 1.44195 1.23735 1.36624 1.04518 1.20321 0.85501 0.92947 0.93336 1.21123 1.06867 0.89640 1.41532 0.89807 1.24817 0.98045 0.94607 0.94794 1.69861 1.37393 1.02109 1.42123 0.86910 0.84262 0.79334 0.79651 1.19552 1.20360 1.18860 1.18282 0.98479 1.01228 0.83802 1.20196 1.00506 1.00841 0.90407 1.20730 0.97836 0.99733 0.95480 1.20884 0.96632 0.99916 0.98354 1.20492 0.99595 0.99734 0.90281 1.18770 0.95315 0.99125 0.92502 1.19227 0.81977 0.83248 0.79389 1.91209 1.31314 1.58185 1.55879 1.85149 1.18244 1.34988 1.78629 0.88333 0.87593 0.87565 0.84980 0.85254 0.80490 0.93031 0.93773 0.91851 0.85691 0.86035 0.86381 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.23 2.37 8.36 -13.39 -0.11 2.26 16 3 N -0.26 -3.26 12.55 32.46 0.41 -2.85 16 4 N -0.44 -6.29 3.13 -66.43 -0.21 -6.50 16 5 C 0.11 1.38 6.18 -5.19 -0.03 1.35 16 6 C 0.42 6.84 7.02 -32.97 -0.23 6.61 16 7 O -0.47 -9.21 16.07 5.45 0.09 -9.13 16 8 C -0.31 -5.33 6.11 -104.88 -0.64 -5.97 16 9 C 0.16 2.55 10.71 -16.44 -0.18 2.37 16 10 N -0.42 -7.97 2.70 -115.29 -0.31 -8.29 16 11 C 0.20 4.05 4.75 -5.19 -0.02 4.03 16 12 C -0.55 -13.87 9.94 -34.44 -0.34 -14.21 16 13 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 14 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.88 -24.44 13.96 55.43 0.77 -23.67 16 16 Si 0.87 18.53 27.47 -169.99 -4.67 13.86 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.26 -5.21 6.54 56.52 0.37 -4.84 16 20 C 0.09 1.68 6.78 -83.95 -0.57 1.11 16 21 C -0.10 -1.79 9.96 -39.42 -0.39 -2.19 16 22 C -0.12 -1.85 10.01 -39.57 -0.40 -2.24 16 23 C -0.14 -2.15 10.03 -39.56 -0.40 -2.55 16 24 C -0.08 -1.45 9.80 -39.38 -0.39 -1.84 16 25 C -0.05 -1.02 6.24 -104.92 -0.65 -1.68 16 26 C 0.61 9.51 9.25 54.17 0.50 10.01 16 27 O -0.48 -8.84 17.93 -19.01 -0.34 -9.18 16 28 O -0.27 -3.54 10.71 -19.81 -0.21 -3.75 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.13 1.35 8.13 -51.93 -0.42 0.93 16 34 H 0.18 2.05 7.91 -52.49 -0.42 1.64 16 35 H 0.05 0.98 7.16 -51.93 -0.37 0.61 16 36 H 0.04 0.89 7.57 -51.93 -0.39 0.49 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 41 H 0.12 2.15 7.38 -52.49 -0.39 1.77 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -34.94 367.65 -7.04 -41.99 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.54 Total: 2.76 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.57 Total: -0.78 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.66 Total: -41.30 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.47 Total: -22.06 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.67 Total: 13.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.94 -7.04 -41.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000657278101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.049 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds