Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39993 * 120.46014 * 101.08857 * 3 2 1 5 5 C 1.38215 * 118.36802 * 179.97438 * 4 3 2 6 6 C 1.39532 * 119.20850 * 359.97438 * 5 4 3 7 7 C 1.47872 * 119.57595 * 179.97438 * 6 5 4 8 8 O 1.21451 * 119.99824 * 359.97438 * 7 6 5 9 9 O 1.34709 * 120.00051 * 180.02562 * 7 6 5 10 10 C 1.45207 * 117.00251 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47277 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00217 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00000 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00225 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47094 * 89.99882 * 14 13 11 16 16 H 1.08003 * 119.99808 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00311 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99570 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00179 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47251 * 60.00032 * 19 17 15 21 21 H 1.48501 * 109.47420 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47066 * 299.99897 * 19 17 15 23 23 C 1.46507 * 120.00042 * 359.97438 * 13 11 10 24 24 C 1.52996 * 109.47199 * 89.99738 * 23 13 11 25 25 C 1.47197 * 109.47319 * 180.02562 * 24 23 13 26 26 N 9.11293 * 160.07006 * 332.33073 * 5 1 2 27 27 N 1.32870 * 120.85116 * 0.02562 * 6 5 4 28 28 C 1.31274 * 121.78481 * 359.97438 * 27 6 5 29 29 H 4.52937 * 13.94808 * 0.02562 * 4 2 1 30 30 H 1.07997 * 120.81247 * 0.25101 * 4 3 2 31 31 H 1.08000 * 120.39504 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.46640 * 300.00024 * 10 9 7 33 33 H 1.09004 * 109.46746 * 59.99390 * 10 9 7 34 34 H 1.08998 * 109.47322 * 209.99517 * 14 13 11 35 35 H 1.08998 * 109.47336 * 330.00203 * 14 13 11 36 36 H 0.97005 * 120.00086 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.47112 * 210.00056 * 23 13 11 38 38 H 1.09009 * 109.46670 * 329.99893 * 23 13 11 39 39 H 1.08998 * 109.47349 * 300.00174 * 24 23 13 40 40 H 1.09000 * 109.46714 * 60.00127 * 24 23 13 41 41 H 1.07995 * 119.64648 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3156 0.2330 -1.1842 5 6 4.6968 0.2245 -1.1346 6 6 5.3329 -0.0130 0.0844 7 6 6.8103 -0.0246 0.1467 8 8 7.4620 0.1715 -0.8592 9 8 7.4332 -0.2535 1.3189 10 6 8.8853 -0.2497 1.3056 11 6 9.4010 -0.5207 2.6954 12 8 8.6218 -0.6989 3.6074 13 7 10.7284 -0.5649 2.9248 14 6 11.2299 -0.8277 4.2759 15 6 11.4023 -2.3126 4.4678 16 1 11.1627 -2.9924 3.6634 17 6 11.8669 -2.8031 5.6696 18 7 12.1591 -1.9753 6.6488 19 14 12.0813 -4.6434 5.9071 20 1 13.0511 -5.1617 4.9091 21 1 12.5895 -4.9100 7.2767 22 1 10.7729 -5.3218 5.7244 23 6 11.6698 -0.3501 1.8230 24 6 11.9970 1.1406 1.7150 25 6 12.9424 1.3565 0.6076 26 7 13.6733 1.5186 -0.2435 27 7 4.6283 -0.2300 1.1898 28 6 3.3155 -0.2300 1.1841 29 1 -1.0500 0.0004 0.0002 30 1 2.7964 0.4189 -2.1128 31 1 5.2768 0.3996 -2.0286 32 1 9.2444 -1.0235 0.6271 33 1 9.2429 0.7234 0.9689 34 1 12.1903 -0.3302 4.4102 35 1 10.5179 -0.4471 5.0082 36 1 12.4857 -2.3203 7.4946 37 1 12.5854 -0.9102 2.0129 38 1 11.2214 -0.6922 0.8901 39 1 11.0815 1.7007 1.5251 40 1 12.4453 1.4826 2.6479 41 1 2.7774 -0.4099 2.1030 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729009553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = -10.642730 kcal Electronic energy + Delta-G solvation = -27383.766603 eV Core-core repulsion = 23230.559661 eV Total energy + Delta-G solvation = -4153.206942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06732 -41.09982 -40.37693 -38.09438 -37.60032 -36.71688 -35.44356 -34.87624 -33.40745 -32.23168 -31.99623 -30.70513 -28.53793 -26.52731 -25.35939 -24.80569 -24.52417 -22.67798 -20.34637 -20.13912 -19.55713 -18.88968 -18.48185 -18.27673 -17.78598 -17.65522 -17.42748 -16.92597 -16.54611 -16.27239 -16.04643 -15.77077 -15.59439 -15.23961 -14.86458 -14.58788 -14.41034 -14.33280 -13.95385 -13.82141 -13.63168 -13.58118 -13.46386 -13.18028 -12.95721 -12.73347 -12.67546 -12.51732 -12.18149 -12.13375 -12.05912 -11.82617 -11.75920 -11.68491 -10.99230 -10.73140 -10.63075 -10.57303 -9.97218 -9.56970 -8.17596 -6.29336 -0.94494 0.08481 1.00511 1.13417 1.41187 1.44454 1.50777 1.59999 1.69282 1.80307 1.85363 2.05360 2.26285 2.44720 2.82842 2.91497 3.07999 3.15064 3.22683 3.56336 3.61096 3.71440 3.80662 3.90489 3.99730 4.07652 4.10192 4.13706 4.53893 4.58640 4.62229 4.81074 4.87967 5.00050 5.03000 5.04897 5.13895 5.33306 5.38680 5.57287 5.84225 6.12073 6.28170 6.49309 6.57826 6.62699 6.73173 6.79328 7.27071 7.43247 8.89245 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010066 B = 0.002563 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.990546 B =10921.250053 C =13149.671662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.214 4.214 3 C 0.001 3.999 4 C -0.056 4.056 5 C -0.089 4.089 6 C 0.067 3.933 7 C 0.523 3.477 8 O -0.505 6.505 9 O -0.330 6.330 10 C 0.049 3.951 11 C 0.505 3.495 12 O -0.567 6.567 13 N -0.589 5.589 14 C 0.261 3.739 15 C -0.543 4.543 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.924 5.924 19 Si 0.957 3.043 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.107 3.893 24 C -0.040 4.040 25 C 0.246 3.754 26 N -0.487 5.487 27 N -0.461 5.461 28 C 0.111 3.889 29 H 0.265 0.735 30 H 0.185 0.815 31 H 0.175 0.825 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.044 0.956 35 H 0.006 0.994 36 H 0.266 0.734 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.697 6.916 -17.848 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.214 4.214 3 C -0.001 4.001 4 C -0.081 4.081 5 C -0.109 4.109 6 C -0.068 4.068 7 C 0.367 3.633 8 O -0.394 6.394 9 O -0.244 6.244 10 C -0.027 4.027 11 C 0.293 3.707 12 O -0.445 6.445 13 N -0.321 5.321 14 C 0.140 3.860 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.783 3.217 20 H -0.187 1.187 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.017 4.017 24 C -0.081 4.081 25 C -0.071 4.071 26 N -0.165 5.165 27 N -0.172 5.172 28 C -0.051 4.051 29 H 0.281 0.719 30 H 0.203 0.797 31 H 0.193 0.807 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.062 0.938 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.158 6.976 -17.953 26.471 hybrid contribution -0.239 -0.935 0.428 1.056 sum -18.397 6.041 -17.525 26.116 Atomic orbital electron populations 1.25930 0.96442 0.94201 0.95432 1.19741 0.91752 1.05022 1.04913 1.17417 0.89190 0.98579 0.94917 1.22042 0.92455 0.94536 0.99056 1.22225 0.95501 0.95466 0.97662 1.20167 0.90198 1.04691 0.91715 1.21062 0.88562 0.72803 0.80856 1.90834 1.66707 1.46194 1.35636 1.86751 1.22163 1.81045 1.34422 1.23086 0.77389 1.06886 0.95337 1.20443 0.82816 0.77518 0.89973 1.90735 1.56571 1.50067 1.47171 1.47988 1.04237 1.68787 1.11124 1.18897 0.94076 0.95001 0.78020 1.21718 1.43695 0.93538 0.99184 0.92756 1.25709 0.95174 1.02331 0.95539 1.70010 1.45449 1.36306 1.04623 0.85623 0.78354 0.80226 0.77542 1.18709 1.20705 1.20663 1.21650 0.95336 0.94583 0.90145 1.19847 0.96852 0.98560 0.92890 1.28990 0.92930 0.91904 0.93309 1.81150 1.12133 1.10092 1.13150 1.67655 1.09584 1.10120 1.29806 1.23361 0.88088 0.94917 0.98729 0.71876 0.79737 0.80716 0.86008 0.84796 0.93841 0.97545 0.92523 0.88791 0.87679 0.84816 0.85557 0.80078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 19.25 74.32 1.43 0.70 16 2 C -0.21 -2.70 13.28 30.01 0.40 -2.30 16 3 C 0.00 0.02 5.75 -21.19 -0.12 -0.10 16 4 C -0.06 -0.69 9.89 22.69 0.22 -0.47 16 5 C -0.09 -1.45 9.61 22.58 0.22 -1.23 16 6 C 0.07 1.65 6.75 41.85 0.28 1.93 16 7 C 0.52 14.70 7.94 70.37 0.56 15.26 16 8 O -0.51 -13.77 16.09 19.99 0.32 -13.45 16 9 O -0.33 -10.91 9.56 -49.80 -0.48 -11.39 16 10 C 0.05 1.38 4.51 71.23 0.32 1.70 16 11 C 0.51 19.37 7.75 87.66 0.68 20.05 16 12 O -0.57 -28.73 16.08 15.77 0.25 -28.47 16 13 N -0.59 -21.31 2.46 -826.15 -2.03 -23.34 16 14 C 0.26 12.52 5.16 85.64 0.44 12.96 16 15 C -0.54 -29.29 9.39 25.60 0.24 -29.05 16 16 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 17 C 0.01 0.66 5.46 84.65 0.46 1.12 16 18 N -0.92 -53.53 13.29 21.45 0.28 -53.25 16 19 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 C 0.11 2.60 5.17 86.38 0.45 3.04 16 24 C -0.04 -0.74 6.03 28.79 0.17 -0.56 16 25 C 0.25 5.44 15.43 89.47 1.38 6.82 16 26 N -0.49 -13.75 18.52 19.98 0.37 -13.38 16 27 N -0.46 -12.49 10.09 -183.98 -1.86 -14.35 16 28 C 0.11 2.23 10.92 85.19 0.93 3.16 16 29 H 0.27 -0.54 7.80 -4.42 -0.03 -0.58 16 30 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 31 H 0.18 2.15 7.63 -2.91 -0.02 2.13 16 32 H 0.12 2.85 7.39 -2.39 -0.02 2.83 16 33 H 0.13 2.70 7.18 -2.39 -0.02 2.68 16 34 H 0.04 2.03 8.07 -2.39 -0.02 2.01 16 35 H 0.01 0.36 7.42 -2.39 -0.02 0.35 16 36 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 37 H 0.09 2.44 8.07 -2.39 -0.02 2.42 16 38 H 0.11 1.97 6.44 -2.38 -0.02 1.95 16 39 H 0.13 1.78 7.22 -2.39 -0.02 1.76 16 40 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -83.22 386.82 8.04 -75.18 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.08 Total: 3.56 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: 8.06 Total: 33.02 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -3.23 Total: -104.32 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: 0.10 Total: -53.31 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -83.22 8.04 -75.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729009553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.533 kcal (2) G-P(sol) polarization free energy of solvation -83.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds