Wall clock time and date at job start Sat Apr 11 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.46838 * 2 1 4 4 N 1.30813 * 122.99578 * 269.99839 * 3 2 1 5 5 C 1.30261 * 117.28281 * 180.02562 * 4 3 2 6 6 N 1.37799 * 124.74572 * 180.02562 * 5 4 3 7 7 S 1.70916 * 110.51628 * 359.75905 * 5 4 3 8 8 C 1.36832 * 122.99513 * 90.00424 * 3 2 1 9 9 C 1.41737 * 126.11259 * 359.95780 * 8 3 2 10 10 O 1.21683 * 120.00092 * 0.02562 * 9 8 3 11 11 O 1.34948 * 119.99961 * 180.02562 * 9 8 3 12 12 C 1.42897 * 117.00358 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46775 * 329.99735 * 12 11 9 14 14 C 1.52996 * 109.47499 * 89.99872 * 12 11 9 15 15 C 1.50704 * 109.47170 * 209.99936 * 12 11 9 16 16 O 1.21277 * 120.00310 * 345.90078 * 15 12 11 17 17 N 1.34778 * 119.99865 * 165.89779 * 15 12 11 18 18 C 1.46505 * 120.00114 * 4.21308 * 17 15 12 19 19 C 1.46497 * 119.99869 * 184.48499 * 17 15 12 20 20 C 1.50701 * 109.47039 * 269.72432 * 19 17 15 21 21 H 1.08000 * 120.00327 * 0.02562 * 20 19 17 22 22 C 1.37877 * 119.99560 * 179.97438 * 20 19 17 23 23 N 1.31517 * 119.99529 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00345 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47080 * 89.99923 * 24 22 20 26 26 H 1.48506 * 109.46931 * 209.99774 * 24 22 20 27 27 H 1.48491 * 109.47003 * 329.99689 * 24 22 20 28 28 H 1.08996 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47189 * 299.99895 * 1 2 3 30 30 H 1.08998 * 109.47832 * 59.99895 * 1 2 3 31 31 H 1.08996 * 109.47166 * 240.00324 * 2 1 3 32 32 H 1.08998 * 109.47644 * 119.99585 * 2 1 3 33 33 H 0.97010 * 119.99685 * 359.97438 * 6 5 4 34 34 H 0.96996 * 120.00591 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47503 * 52.29931 * 14 12 11 36 36 H 1.08997 * 109.47586 * 172.30390 * 14 12 11 37 37 H 1.09001 * 109.47041 * 292.30502 * 14 12 11 38 38 H 1.08997 * 109.47076 * 268.49663 * 18 17 15 39 39 H 1.08999 * 109.46805 * 28.49465 * 18 17 15 40 40 H 1.08994 * 109.47371 * 148.49484 * 18 17 15 41 41 H 1.08992 * 109.47170 * 29.72717 * 19 17 15 42 42 H 1.09009 * 109.47056 * 149.72721 * 19 17 15 43 43 H 0.97002 * 119.99749 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2697 2.0925 -1.0971 5 6 2.7021 3.3144 -0.9675 6 7 2.9998 4.1575 -2.0159 7 16 2.8418 3.7282 0.6849 8 6 2.2806 2.1234 1.1476 9 6 2.1115 1.6471 2.4718 10 8 1.7107 0.5144 2.6644 11 8 2.3949 2.4498 3.5190 12 6 2.2018 1.9042 4.8255 13 1 1.3972 1.1695 4.7972 14 6 3.4930 1.2289 5.2922 15 6 1.8389 3.0100 5.7830 16 8 1.9999 4.1681 5.4611 17 7 1.3352 2.7118 6.9971 18 6 1.2267 1.3139 7.4219 19 6 0.8908 3.7852 7.8895 20 6 2.0407 4.2235 8.7595 21 1 3.0060 3.7502 8.6576 22 6 1.8604 5.2296 9.6848 23 7 2.8640 5.6124 10.4437 24 14 0.1909 6.0489 9.8607 25 1 -0.6164 5.3161 10.8690 26 1 0.3736 7.4555 10.3003 27 1 -0.5117 6.0264 8.5527 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.8913 3.8517 -2.9302 34 1 3.3185 5.0566 -1.8400 35 1 4.3248 1.9259 5.1906 36 1 3.3917 0.9338 6.3365 37 1 3.6823 0.3459 4.6818 38 1 0.2459 0.9258 7.1474 39 1 2.0011 0.7240 6.9317 40 1 1.3524 1.2519 8.5028 41 1 0.5417 4.6300 7.2959 42 1 0.0776 3.4220 8.5179 43 1 2.7371 6.3200 11.0951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775868519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:16 Heat of formation + Delta-G solvation = -88.700820 kcal Electronic energy + Delta-G solvation = -27549.251030 eV Core-core repulsion = 23528.103187 eV Total energy + Delta-G solvation = -4021.147844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.15180 -41.17020 -40.33406 -37.78149 -36.73362 -36.30480 -34.83159 -33.61474 -33.25400 -30.85606 -30.10470 -27.70974 -26.78921 -25.84985 -24.57899 -23.79826 -22.99627 -21.08033 -20.47903 -19.72756 -19.14703 -18.80908 -18.33679 -17.57562 -17.46364 -17.26976 -16.95143 -16.40844 -16.27452 -15.95841 -15.80282 -15.19686 -14.96934 -14.78864 -14.77054 -14.34727 -14.18308 -13.75993 -13.70348 -13.56735 -13.48994 -13.17121 -13.00919 -12.90535 -12.55263 -12.42646 -12.24748 -12.05262 -11.98032 -11.83683 -11.81742 -11.75353 -11.44068 -10.90343 -10.81581 -10.65014 -10.49535 -9.49716 -9.06645 -8.33377 -6.38666 -0.79743 -0.12055 0.51970 1.19785 1.32747 1.33147 1.39945 1.48235 1.56755 1.89881 2.18258 2.31935 2.41980 3.00421 3.37742 3.44762 3.69340 3.81400 3.85155 4.00772 4.23260 4.37719 4.40865 4.44938 4.55285 4.60496 4.63518 4.75078 4.86268 4.92222 4.94302 5.03635 5.12396 5.14484 5.25422 5.41397 5.43951 5.54264 5.71062 6.11909 6.22152 6.48117 6.62645 6.63976 6.76224 7.15552 7.28868 8.83582 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.002763 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.306843 B =10132.519315 C =10952.266396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 C 0.242 3.758 4 N -0.570 5.570 5 C 0.339 3.661 6 N -0.773 5.773 7 S 0.183 5.817 8 C -0.387 4.387 9 C 0.552 3.448 10 O -0.514 6.514 11 O -0.343 6.343 12 C 0.083 3.917 13 H 0.125 0.875 14 C -0.166 4.166 15 C 0.501 3.499 16 O -0.574 6.574 17 N -0.598 5.598 18 C 0.059 3.941 19 C 0.224 3.776 20 C -0.536 4.536 21 H 0.031 0.969 22 C 0.011 3.989 23 N -0.945 5.945 24 Si 0.947 3.053 25 H -0.249 1.249 26 H -0.282 1.282 27 H -0.256 1.256 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.427 0.573 34 H 0.434 0.566 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.020 0.980 42 H 0.057 0.943 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 -10.859 -26.070 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.105 4.105 3 C 0.098 3.902 4 N -0.297 5.297 5 C -0.032 4.032 6 N -0.324 5.324 7 S 0.433 5.567 8 C -0.511 4.511 9 C 0.400 3.600 10 O -0.406 6.406 11 O -0.260 6.260 12 C 0.025 3.975 13 H 0.142 0.858 14 C -0.223 4.223 15 C 0.288 3.712 16 O -0.453 6.453 17 N -0.330 5.330 18 C -0.083 4.083 19 C 0.102 3.898 20 C -0.574 4.574 21 H 0.049 0.951 22 C -0.187 4.187 23 N -0.585 5.585 24 Si 0.770 3.230 25 H -0.173 1.173 26 H -0.208 1.208 27 H -0.180 1.180 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.262 0.738 34 H 0.269 0.731 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.620 -9.622 -26.035 27.879 hybrid contribution -0.311 0.298 0.432 0.610 sum -2.931 -9.324 -25.603 27.405 Atomic orbital electron populations 1.21552 0.92827 1.03298 1.01204 1.20595 0.97403 0.87362 1.05135 1.20933 0.88112 0.97359 0.83768 1.66222 1.26621 1.05896 1.30977 1.24132 0.92702 0.91436 0.94972 1.41666 1.69645 1.15202 1.05867 1.84581 1.64355 1.11635 0.96130 1.22983 1.31495 1.01169 0.95432 1.18233 0.74178 0.83302 0.84312 1.90788 1.45134 1.18978 1.85669 1.86309 1.79297 1.45496 1.14860 1.22091 1.02384 0.93842 0.79219 0.85762 1.22330 0.94556 1.01354 1.04039 1.20691 0.77684 0.89759 0.83100 1.90656 1.54093 1.23105 1.77423 1.47826 1.61080 1.09338 1.14724 1.22344 1.03715 0.79577 1.02615 1.19427 0.94806 0.86863 0.88714 1.21520 0.97148 1.19948 1.18833 0.95102 1.25846 1.01361 0.96737 0.94719 1.70051 1.33762 1.30698 1.23959 0.85718 0.79339 0.78208 0.79746 1.17331 1.20762 1.18037 0.89744 0.94203 0.92430 0.88289 0.88303 0.73828 0.73126 0.92181 0.88198 0.88543 0.89902 0.88720 0.90391 0.96197 0.92543 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.89 71.98 0.71 -1.66 16 2 C -0.07 -1.29 5.72 29.85 0.17 -1.12 16 3 C 0.24 5.72 6.08 42.38 0.26 5.98 16 4 N -0.57 -12.03 10.53 -188.49 -1.99 -14.02 16 5 C 0.34 5.86 8.53 179.43 1.53 7.39 16 6 N -0.77 -5.87 9.04 -59.98 -0.54 -6.41 16 7 S 0.18 4.10 22.99 -56.49 -1.30 2.80 16 8 C -0.39 -10.53 6.32 22.80 0.14 -10.38 16 9 C 0.55 17.11 7.69 68.68 0.53 17.64 16 10 O -0.51 -15.55 13.39 19.24 0.26 -15.29 16 11 O -0.34 -12.19 9.13 -52.29 -0.48 -12.67 16 12 C 0.08 2.80 2.12 29.85 0.06 2.86 16 13 H 0.12 3.61 6.66 -2.39 -0.02 3.59 16 14 C -0.17 -4.64 9.13 71.98 0.66 -3.99 16 15 C 0.50 21.83 6.99 87.66 0.61 22.44 16 16 O -0.57 -30.88 16.18 15.63 0.25 -30.62 16 17 N -0.60 -24.92 2.86 -851.13 -2.43 -27.35 16 18 C 0.06 1.70 9.86 127.77 1.26 2.96 16 19 C 0.22 11.02 4.21 85.63 0.36 11.38 16 20 C -0.54 -31.72 9.94 25.60 0.25 -31.46 16 21 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 22 C 0.01 0.68 5.47 84.65 0.46 1.14 16 23 N -0.94 -59.89 13.96 21.45 0.30 -59.59 16 24 Si 0.95 44.43 27.47 68.60 1.88 46.32 16 25 H -0.25 -10.63 7.11 99.48 0.71 -9.93 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.26 -11.63 6.54 99.48 0.65 -10.98 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.10 2.16 5.99 -2.39 -0.01 2.15 16 33 H 0.43 1.71 8.95 -92.70 -0.83 0.88 16 34 H 0.43 1.11 8.95 -92.71 -0.83 0.28 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.10 2.56 5.52 -2.39 -0.01 2.55 16 37 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.09 2.25 4.22 -2.39 -0.01 2.24 16 40 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 41 H 0.02 1.07 6.54 -2.39 -0.02 1.05 16 42 H 0.06 2.47 7.50 -2.38 -0.02 2.46 16 43 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -84.26 374.02 2.34 -81.92 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -0.63 Total: 11.74 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 7.01 Total: 23.17 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.66 Total: -107.37 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: 0.03 Total: -58.58 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.30 Total: 2.80 kcal Total: -84.26 2.34 -81.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775868519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.779 kcal (2) G-P(sol) polarization free energy of solvation -84.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds