Wall clock time and date at job start Sat Apr 11 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47066 * 2 1 4 4 N 1.30824 * 122.99037 * 90.02368 * 3 2 1 5 5 C 1.30262 * 117.27692 * 179.97438 * 4 3 2 6 6 N 1.37805 * 124.73992 * 180.02562 * 5 4 3 7 7 S 1.70920 * 110.51934 * 0.26794 * 5 4 3 8 8 C 1.36826 * 122.99857 * 270.02575 * 3 2 1 9 9 C 1.41734 * 126.11323 * 0.02562 * 8 3 2 10 10 O 1.21686 * 120.00312 * 359.97438 * 9 8 3 11 11 O 1.34950 * 120.00379 * 179.97438 * 9 8 3 12 12 C 1.42902 * 117.00559 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46952 * 179.97438 * 12 11 9 14 14 O 1.21278 * 120.00097 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99441 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00517 * 0.02562 * 15 13 12 17 17 C 1.53002 * 109.46987 * 89.99552 * 16 15 13 18 18 C 1.46508 * 119.99647 * 180.02562 * 15 13 12 19 19 C 1.50701 * 109.46888 * 90.00261 * 18 15 13 20 20 H 1.07995 * 120.00185 * 0.02562 * 19 18 15 21 21 C 1.37874 * 119.99577 * 179.97438 * 19 18 15 22 22 N 1.31514 * 120.00555 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99747 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46919 * 90.00627 * 23 21 19 25 25 H 1.48500 * 109.47488 * 210.00336 * 23 21 19 26 26 H 1.48502 * 109.47560 * 330.00510 * 23 21 19 27 27 H 1.08996 * 109.46663 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46877 * 299.99555 * 1 2 3 29 29 H 1.09000 * 109.46756 * 59.99875 * 1 2 3 30 30 H 1.09003 * 109.47396 * 240.00816 * 2 1 3 31 31 H 1.08992 * 109.47427 * 120.00636 * 2 1 3 32 32 H 0.96999 * 120.00004 * 0.02562 * 6 5 4 33 33 H 0.97005 * 119.99887 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.46712 * 299.99432 * 12 11 9 35 35 H 1.08998 * 109.46869 * 59.99544 * 12 11 9 36 36 H 1.08996 * 109.47757 * 209.99870 * 16 15 13 37 37 H 1.09005 * 109.46685 * 330.00219 * 16 15 13 38 38 H 1.09001 * 109.47130 * 300.00221 * 17 16 15 39 39 H 1.08997 * 109.47120 * 60.00784 * 17 16 15 40 40 H 1.09003 * 109.46628 * 180.02562 * 17 16 15 41 41 H 1.08997 * 109.46627 * 210.00271 * 18 15 13 42 42 H 1.08998 * 109.46870 * 330.00036 * 18 15 13 43 43 H 0.96994 * 120.00358 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2702 2.0923 1.0973 5 6 2.7027 3.3141 0.9676 6 7 3.0017 4.1568 2.0162 7 16 2.8411 3.7285 -0.6848 8 6 2.2803 2.1236 -1.1475 9 6 2.1108 1.6475 -2.4717 10 8 1.7102 0.5147 -2.6645 11 8 2.3936 2.4503 -3.5189 12 6 2.1992 1.9053 -4.8255 13 6 2.5630 2.9389 -5.8601 14 8 2.9502 4.0345 -5.5128 15 7 2.4581 2.6457 -7.1714 16 6 1.9899 1.3225 -7.5910 17 6 0.4668 1.3427 -7.7357 18 6 2.8124 3.6503 -8.1772 19 6 4.2734 3.5210 -8.5234 20 1 4.8775 2.7659 -8.0426 21 6 4.8385 4.3662 -9.4547 22 7 4.1028 5.2854 -10.0405 23 14 6.6496 4.2064 -9.8832 24 1 6.8088 3.2575 -11.0144 25 1 7.1852 5.5355 -10.2731 26 1 7.3948 3.6993 -8.7031 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 2.8943 3.8505 2.9303 33 1 3.3196 5.0562 1.8402 34 1 2.8323 1.0269 -4.9506 35 1 1.1543 1.6206 -4.9486 36 1 2.4424 1.0635 -8.5482 37 1 2.2739 0.5825 -6.8427 38 1 0.0143 1.6016 -6.7784 39 1 0.1827 2.0826 -8.4839 40 1 0.1185 0.3580 -8.0474 41 1 2.2115 3.4948 -9.0732 42 1 2.6200 4.6465 -7.7791 43 1 4.5005 5.8802 -10.6954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775871051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:20 Heat of formation + Delta-G solvation = -99.017548 kcal Electronic energy + Delta-G solvation = -27182.164031 eV Core-core repulsion = 23160.568821 eV Total energy + Delta-G solvation = -4021.595211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01624 -41.07318 -40.33969 -37.73519 -36.97265 -36.29913 -34.93309 -33.59686 -31.83090 -31.41083 -30.15646 -28.32772 -26.58664 -24.96767 -24.28913 -23.88504 -23.31945 -21.10478 -20.27912 -19.74739 -18.78675 -18.58145 -18.28687 -17.90293 -17.54278 -17.30234 -16.96568 -16.44013 -16.37300 -15.88191 -15.76041 -15.16358 -14.91469 -14.76691 -14.63925 -14.51529 -13.95261 -13.82029 -13.60396 -13.55424 -13.27372 -13.07207 -12.98933 -12.67894 -12.50189 -12.42378 -12.21097 -12.03490 -11.93730 -11.81942 -11.76178 -11.69517 -11.43868 -10.90631 -10.70350 -10.63848 -10.49090 -9.53552 -9.06234 -8.22805 -6.37276 -0.79321 -0.11428 0.52440 1.21347 1.34103 1.37716 1.40239 1.50689 1.62898 1.90244 2.18748 2.35626 2.51269 3.07207 3.45014 3.45160 3.76423 3.87904 4.00086 4.13162 4.17738 4.38776 4.39640 4.42752 4.45877 4.60511 4.89033 4.94653 4.95752 5.03624 5.04467 5.12649 5.20154 5.25443 5.37248 5.41833 5.55201 5.71444 5.80577 6.04785 6.12347 6.54137 6.66925 6.72010 6.76585 7.21979 7.37284 8.84686 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.002726 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.154444 B =10268.395109 C =11542.028330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C 0.242 3.758 4 N -0.570 5.570 5 C 0.338 3.662 6 N -0.772 5.772 7 S 0.183 5.817 8 C -0.387 4.387 9 C 0.553 3.447 10 O -0.515 6.515 11 O -0.349 6.349 12 C 0.064 3.936 13 C 0.500 3.500 14 O -0.577 6.577 15 N -0.595 5.595 16 C 0.094 3.906 17 C -0.163 4.163 18 C 0.263 3.737 19 C -0.545 4.545 20 H 0.054 0.946 21 C 0.009 3.991 22 N -0.927 5.927 23 Si 0.968 3.032 24 H -0.263 1.263 25 H -0.281 1.281 26 H -0.274 1.274 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.427 0.573 33 H 0.434 0.566 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.098 0.902 41 H 0.030 0.970 42 H -0.001 1.001 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 -9.395 23.767 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.106 4.106 3 C 0.098 3.902 4 N -0.297 5.297 5 C -0.033 4.033 6 N -0.324 5.324 7 S 0.434 5.566 8 C -0.511 4.511 9 C 0.401 3.599 10 O -0.407 6.407 11 O -0.265 6.265 12 C -0.013 4.013 13 C 0.287 3.713 14 O -0.457 6.457 15 N -0.327 5.327 16 C -0.028 4.028 17 C -0.221 4.221 18 C 0.142 3.858 19 C -0.583 4.583 20 H 0.072 0.928 21 C -0.190 4.190 22 N -0.567 5.567 23 Si 0.792 3.208 24 H -0.188 1.188 25 H -0.206 1.206 26 H -0.199 1.199 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.262 0.738 33 H 0.269 0.731 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.048 0.952 42 H 0.018 0.982 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.075 -8.157 23.748 25.834 hybrid contribution 0.706 -0.094 -0.475 0.856 sum -5.370 -8.250 23.273 25.269 Atomic orbital electron populations 1.21548 0.92615 1.03310 1.01321 1.20599 0.97595 0.87343 1.05035 1.20929 0.88128 0.97339 0.83761 1.66230 1.26635 1.05891 1.30952 1.24140 0.92656 0.91471 0.94992 1.41666 1.69647 1.15201 1.05858 1.84628 1.64377 1.11547 0.96080 1.22976 1.31442 1.01280 0.95416 1.18191 0.74451 0.83134 0.84149 1.90808 1.45057 1.19003 1.85855 1.86228 1.79842 1.45408 1.15058 1.22417 1.04982 0.95302 0.78578 1.20542 0.78509 0.88332 0.83922 1.90667 1.47948 1.26003 1.81080 1.48203 1.63614 1.16112 1.04787 1.21867 0.95832 0.82565 1.02534 1.22172 0.94339 1.03571 1.01991 1.18790 0.94823 0.86550 0.85611 1.21701 0.95897 1.17702 1.23042 0.92803 1.25839 1.03046 0.94397 0.95722 1.70044 1.38112 1.20319 1.28227 0.85415 0.78962 0.77811 0.78615 1.18752 1.20597 1.19854 0.89796 0.92359 0.93981 0.88480 0.88364 0.73829 0.73125 0.86736 0.86292 0.89970 0.88427 0.92489 0.93701 0.88340 0.95228 0.98246 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.90 71.98 0.71 -1.61 16 2 C -0.07 -1.33 5.72 29.85 0.17 -1.16 16 3 C 0.24 5.81 6.08 42.38 0.26 6.07 16 4 N -0.57 -12.22 10.53 -188.48 -1.99 -14.20 16 5 C 0.34 5.98 8.53 179.43 1.53 7.51 16 6 N -0.77 -6.12 9.04 -59.97 -0.54 -6.66 16 7 S 0.18 4.21 22.99 -56.49 -1.30 2.91 16 8 C -0.39 -10.69 6.32 22.80 0.14 -10.55 16 9 C 0.55 17.35 7.73 68.68 0.53 17.88 16 10 O -0.51 -15.86 13.93 19.23 0.27 -15.60 16 11 O -0.35 -12.53 9.44 -52.20 -0.49 -13.02 16 12 C 0.06 2.14 4.41 71.24 0.31 2.45 16 13 C 0.50 22.05 7.75 87.66 0.68 22.73 16 14 O -0.58 -31.58 16.08 16.01 0.26 -31.32 16 15 N -0.59 -25.71 2.46 -826.14 -2.03 -27.74 16 16 C 0.09 2.89 5.93 86.38 0.51 3.40 16 17 C -0.16 -4.09 10.24 71.98 0.74 -3.35 16 18 C 0.26 14.30 5.16 85.63 0.44 14.74 16 19 C -0.54 -31.63 9.39 25.60 0.24 -31.39 16 20 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 21 C 0.01 0.53 5.46 84.65 0.46 0.99 16 22 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 23 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 2.20 5.99 -2.39 -0.01 2.18 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.43 1.83 8.95 -92.71 -0.83 1.00 16 33 H 0.43 1.27 8.95 -92.70 -0.83 0.44 16 34 H 0.11 3.30 7.39 -2.39 -0.02 3.28 16 35 H 0.12 3.29 7.17 -2.39 -0.02 3.27 16 36 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16 37 H 0.10 2.38 6.44 -2.38 -0.02 2.37 16 38 H 0.06 1.37 7.22 -2.39 -0.02 1.35 16 39 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 42 H 0.00 -0.04 7.42 -2.39 -0.02 -0.05 16 43 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -80.98 381.87 2.63 -78.34 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -0.59 Total: 8.35 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: 6.73 Total: 27.71 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -4.27 Total: -104.53 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: 0.03 Total: -59.94 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.30 Total: 2.91 kcal Total: -80.98 2.63 -78.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775871051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.673 kcal (2) G-P(sol) polarization free energy of solvation -80.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds