Wall clock time and date at job start Sat Apr 11 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47066 * 2 1 4 4 C 1.52999 * 109.47182 * 239.99756 * 2 1 3 5 5 O 1.45207 * 109.46994 * 119.99745 * 2 1 3 6 6 C 1.34633 * 117.00117 * 60.00138 * 5 2 1 7 7 O 1.21511 * 119.99784 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99816 * 180.02562 * 6 5 2 9 9 C 1.46509 * 119.99864 * 180.02562 * 8 6 5 10 10 C 1.50691 * 109.46984 * 179.97438 * 9 8 6 11 11 N 1.28654 * 124.71817 * 89.99898 * 10 9 8 12 12 C 1.33565 * 115.76583 * 179.97438 * 11 10 9 13 13 C 1.47263 * 123.14303 * 179.97438 * 12 11 10 14 14 O 1.21633 * 120.00132 * 180.02562 * 13 12 11 15 15 N 1.34777 * 119.99630 * 0.02562 * 13 12 11 16 16 C 1.46499 * 119.99665 * 179.72408 * 15 13 12 17 17 C 1.50703 * 109.47138 * 180.28062 * 16 15 13 18 18 H 1.08001 * 120.00037 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00502 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99575 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47135 * 90.00187 * 21 19 17 23 23 H 1.48500 * 109.46751 * 210.00163 * 21 19 17 24 24 H 1.48503 * 109.47215 * 329.99996 * 21 19 17 25 25 C 1.35210 * 113.71326 * 0.24655 * 12 11 10 26 26 S 1.70770 * 124.72324 * 269.99809 * 10 9 8 27 27 H 1.09002 * 109.46488 * 300.00346 * 1 2 3 28 28 H 1.09000 * 109.46914 * 60.00280 * 1 2 3 29 29 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46657 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46504 * 299.99655 * 3 2 1 32 32 H 1.08995 * 109.47440 * 59.99805 * 3 2 1 33 33 H 1.09003 * 109.46590 * 300.00068 * 4 2 1 34 34 H 1.08997 * 109.47029 * 59.99415 * 4 2 1 35 35 H 1.08997 * 109.47509 * 180.02562 * 4 2 1 36 36 H 0.96999 * 119.99999 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.47094 * 59.99072 * 9 8 6 38 38 H 1.08995 * 109.46691 * 299.99564 * 9 8 6 39 39 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 40 40 H 1.09009 * 109.47454 * 300.27637 * 16 15 13 41 41 H 1.08998 * 109.47492 * 60.27932 * 16 15 13 42 42 H 0.96997 * 120.00009 * 180.02562 * 20 19 17 43 43 H 1.08007 * 125.58170 * 179.75441 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3385 7 8 0.9510 -2.5094 0.5042 8 7 2.0673 -2.6652 2.4173 9 6 1.6741 -4.0668 2.5834 10 6 2.2650 -4.6063 3.8603 11 7 1.6887 -4.5638 5.0097 12 6 2.3756 -5.0966 6.0237 13 6 1.8705 -5.1346 7.4065 14 8 2.5450 -5.6339 8.2869 15 7 0.6608 -4.6159 7.6964 16 6 0.1557 -4.6591 9.0709 17 6 -1.2102 -4.0246 9.1243 18 1 -1.6572 -3.6284 8.2245 19 6 -1.8889 -3.9490 10.3221 20 7 -1.3440 -4.4301 11.4182 21 14 -3.5817 -3.1619 10.3884 22 1 -4.6189 -4.1978 10.1511 23 1 -3.7906 -2.5492 11.7249 24 1 -3.6812 -2.1129 9.3419 25 6 3.5806 -5.5926 5.6630 26 16 3.7928 -5.3593 3.9830 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6766 -0.2076 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 2.6268 -2.2363 3.0835 37 1 2.0413 -4.6497 1.7386 38 1 0.5873 -4.1364 2.6278 39 1 0.1227 -4.2180 6.9943 40 1 0.0878 -5.6959 9.4007 41 1 0.8355 -4.1135 9.7252 42 1 -1.8217 -4.3772 12.2607 43 1 4.2919 -6.0610 6.3273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787620434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:31 Heat of formation + Delta-G solvation = -80.702403 kcal Electronic energy + Delta-G solvation = -26380.083137 eV Core-core repulsion = 22359.282131 eV Total energy + Delta-G solvation = -4020.801006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06367 -40.34297 -38.30625 -37.64758 -35.28550 -34.29458 -34.23785 -32.33084 -31.15924 -27.92886 -27.73848 -27.67950 -27.63028 -24.96656 -22.94721 -22.23243 -21.10833 -20.38282 -19.74571 -18.85500 -18.29697 -17.00482 -16.85839 -16.51417 -15.97786 -15.73620 -15.26017 -14.99659 -14.92915 -14.86098 -14.51194 -14.23510 -13.82651 -13.76108 -13.47410 -13.08396 -12.93307 -12.81199 -12.45778 -12.23716 -12.21383 -12.09274 -11.94207 -11.83780 -11.74673 -11.64306 -10.98666 -10.88714 -10.67232 -10.38712 -10.33635 -10.07448 -9.87570 -9.58575 -9.45130 -9.37079 -9.11784 -8.74176 -7.92315 -6.16667 -4.23252 0.29021 0.98926 1.40943 1.70966 2.21863 2.55477 3.25822 3.31741 3.34851 3.57051 3.77691 3.88569 4.09611 4.37592 4.38382 4.43475 4.57404 4.61330 5.00214 5.12139 5.14260 5.19749 5.21889 5.22875 5.31881 5.35822 5.36756 5.46908 5.54179 5.65661 5.76787 5.88464 5.97023 6.07172 6.21943 7.04763 7.19530 7.26728 7.40661 7.47489 7.67818 7.95104 8.06150 8.57569 8.73265 8.99915 9.42874 10.93583 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009519 B = 0.002572 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.915856 B =10883.093058 C =13302.608428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.363 6.363 6 C 0.656 3.344 7 O -0.566 6.566 8 N -0.707 5.707 9 C 0.224 3.776 10 C -0.015 4.015 11 N -0.413 5.413 12 C 0.022 3.978 13 C 0.571 3.429 14 O -0.549 6.549 15 N -0.687 5.687 16 C 0.247 3.753 17 C -0.542 4.542 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.219 4.219 26 S 0.220 5.780 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.410 0.590 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.401 0.599 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.266 0.734 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.839 6.152 -26.300 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.409 3.591 7 O -0.455 6.455 8 N -0.368 5.368 9 C 0.098 3.902 10 C -0.294 4.294 11 N -0.129 5.129 12 C -0.113 4.113 13 C 0.352 3.648 14 O -0.429 6.429 15 N -0.334 5.334 16 C 0.127 3.873 17 C -0.581 4.581 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.524 5.524 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.361 4.361 26 S 0.476 5.524 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.245 0.755 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.235 0.765 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 11.115 5.601 -26.549 29.322 hybrid contribution -1.291 0.718 1.144 1.868 sum 9.824 6.319 -25.405 27.962 Atomic orbital electron populations 1.22533 0.93807 1.05218 1.02668 1.22106 0.94527 0.91505 0.81885 1.21871 1.02244 0.92494 1.03270 1.22521 1.01523 1.03530 0.96480 1.86317 1.71456 1.23326 1.46631 1.17916 0.78668 0.80607 0.81891 1.90918 1.40802 1.70477 1.43309 1.44630 1.56031 1.11997 1.24113 1.19597 1.01226 0.79264 0.90120 1.26795 0.97783 1.07140 0.97710 1.66949 1.32784 1.15254 0.97944 1.20896 0.92523 1.02383 0.95498 1.17097 0.82847 0.80158 0.84676 1.90786 1.58129 1.47229 1.46720 1.46385 1.16492 1.56401 1.14087 1.19224 0.94054 0.97974 0.76045 1.21216 1.01481 1.40297 0.95087 0.91755 1.24942 0.98521 0.95263 0.95236 1.69970 1.38176 1.44877 0.99329 0.86397 0.83453 0.79450 0.77532 1.20422 1.20994 1.19675 1.26740 1.02293 1.06405 1.00670 1.82751 1.17223 1.50993 1.01479 0.91962 0.91099 0.89278 0.91456 0.90088 0.91315 0.89330 0.91095 0.92166 0.75503 0.88634 0.87727 0.76520 0.95156 0.95147 0.92430 0.79030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 8.37 37.16 0.31 -1.28 16 2 C 0.14 1.15 1.13 -90.62 -0.10 1.04 16 3 C -0.14 -0.86 8.85 37.16 0.33 -0.53 16 4 C -0.18 -1.41 8.37 37.16 0.31 -1.10 16 5 O -0.36 -3.72 9.94 -40.31 -0.40 -4.12 16 6 C 0.66 7.16 8.06 54.05 0.44 7.59 16 7 O -0.57 -7.12 11.88 -19.28 -0.23 -7.34 16 8 N -0.71 -6.61 5.55 -66.47 -0.37 -6.98 16 9 C 0.22 2.04 6.24 -5.19 -0.03 2.00 16 10 C -0.02 -0.16 6.71 -13.61 -0.09 -0.25 16 11 N -0.41 -5.97 10.12 -8.51 -0.09 -6.06 16 12 C 0.02 0.37 6.70 -84.52 -0.57 -0.20 16 13 C 0.57 12.08 7.80 -12.59 -0.10 11.98 16 14 O -0.55 -13.25 16.71 5.25 0.09 -13.17 16 15 N -0.69 -15.45 5.54 -62.61 -0.35 -15.79 16 16 C 0.25 6.68 5.43 -5.19 -0.03 6.65 16 17 C -0.54 -15.02 9.28 -34.44 -0.32 -15.34 16 18 H 0.06 1.69 7.60 -52.49 -0.40 1.30 16 19 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 21 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C -0.22 -2.78 10.62 29.65 0.31 -2.47 16 26 S 0.22 1.91 22.92 -107.50 -2.46 -0.56 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.86 5.88 -51.93 -0.31 0.56 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.41 3.46 8.57 -40.82 -0.35 3.11 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.40 8.30 7.84 -40.82 -0.32 7.98 16 40 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.19 2.26 8.03 -52.48 -0.42 1.84 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -33.59 381.50 -7.86 -41.46 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.89 Total: 6.35 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 0.37 Total: 9.79 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.07 Total: -54.30 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.54 Total: -24.63 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.46 Total: -0.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.59 -7.86 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787620434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.247 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds