Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46949 * 2 1 4 4 C 1.50697 * 109.46849 * 120.00292 * 2 1 3 5 5 O 1.20820 * 120.00071 * 120.00535 * 4 2 1 6 6 O 1.34229 * 119.99889 * 299.99789 * 4 2 1 7 7 C 1.45201 * 117.00061 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47413 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99954 * 354.94036 * 8 7 6 10 10 N 1.34770 * 120.00462 * 174.93858 * 8 7 6 11 11 C 1.37139 * 119.99880 * 5.67600 * 10 8 7 12 12 H 1.07997 * 120.00129 * 55.66600 * 11 10 8 13 13 C 1.38890 * 120.00207 * 235.67023 * 11 10 8 14 14 N 1.31424 * 119.99908 * 9.24641 * 13 11 10 15 15 Si 1.86802 * 120.00182 * 189.23950 * 13 11 10 16 16 H 1.48504 * 109.46729 * 90.00506 * 15 13 11 17 17 H 1.48497 * 109.47326 * 210.00074 * 15 13 11 18 18 H 1.48495 * 109.47054 * 330.00261 * 15 13 11 19 19 C 1.39787 * 120.00306 * 185.67775 * 10 8 7 20 20 C 1.38961 * 120.07792 * 175.18913 * 19 10 8 21 21 C 1.38082 * 119.92435 * 179.97438 * 20 19 10 22 22 C 1.38311 * 120.07409 * 359.97438 * 21 20 19 23 23 C 1.38312 * 120.15706 * 0.02562 * 22 21 20 24 24 C 1.38079 * 120.07859 * 0.02562 * 23 22 21 25 25 C 1.52996 * 109.46990 * 240.00178 * 2 1 3 26 26 F 1.39902 * 109.47517 * 60.00051 * 25 2 1 27 27 F 1.39903 * 109.47000 * 179.97438 * 25 2 1 28 28 H 1.08995 * 109.47212 * 300.00155 * 1 2 3 29 29 H 1.09006 * 109.47083 * 59.99851 * 1 2 3 30 30 H 1.09006 * 109.47181 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47182 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47362 * 300.00085 * 3 2 1 33 33 H 1.09008 * 109.47179 * 60.00076 * 3 2 1 34 34 H 1.09000 * 109.47152 * 60.00218 * 7 6 4 35 35 H 1.08999 * 109.46854 * 300.00309 * 7 6 4 36 36 H 0.97001 * 119.99727 * 184.98449 * 14 13 11 37 37 H 1.07998 * 120.04135 * 359.70126 * 20 19 10 38 38 H 1.08001 * 119.96344 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.92332 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.95882 * 180.02562 * 23 22 21 41 41 H 1.08001 * 120.04261 * 179.97438 * 24 23 22 42 42 H 1.08998 * 109.47423 * 299.99767 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7270 -1.6928 1.1196 6 8 1.7080 -0.2519 2.4495 7 6 2.2275 -0.9858 3.5896 8 6 1.7625 -0.3294 4.8640 9 8 1.1397 0.7103 4.8183 10 7 2.0386 -0.8977 6.0544 11 6 2.8405 -2.0085 6.1144 12 1 3.8312 -1.9832 5.6852 13 6 2.3786 -3.1663 6.7270 14 7 1.1181 -3.2615 7.0863 15 14 3.5490 -4.5882 7.0400 16 1 4.1760 -4.4281 8.3766 17 1 2.7965 -5.8676 6.9964 18 1 4.6049 -4.5991 5.9959 19 6 1.5075 -0.3549 7.2280 20 6 1.7080 -0.9957 8.4446 21 6 1.1825 -0.4564 9.6021 22 6 0.4576 0.7204 9.5515 23 6 0.2560 1.3609 8.3423 24 6 0.7778 0.8267 7.1808 25 6 2.0400 -0.7212 -1.2492 26 9 1.5737 -0.0617 -2.3916 27 9 3.4390 -0.7207 -1.2495 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8901 34 1 3.3170 -0.9847 3.5566 35 1 1.8641 -2.0129 3.5568 36 1 0.8115 -4.0392 7.5784 37 1 2.2706 -1.9167 8.4843 38 1 1.3376 -0.9541 10.5479 39 1 0.0472 1.1398 10.4582 40 1 -0.3102 2.2799 8.3065 41 1 0.6197 1.3271 6.2368 42 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795860241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -188.051298 kcal Electronic energy + Delta-G solvation = -30273.335769 eV Core-core repulsion = 25661.746627 eV Total energy + Delta-G solvation = -4611.589142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.09406 -48.04534 -42.05980 -41.37927 -39.06023 -37.72179 -36.90976 -36.63249 -33.91511 -31.52444 -31.28526 -29.13281 -28.55037 -27.43323 -27.11710 -24.88561 -23.45286 -22.89018 -21.43745 -21.20474 -19.77677 -19.10891 -18.43501 -18.32292 -18.02339 -17.85301 -17.42116 -17.33039 -16.94789 -16.52857 -16.13666 -15.95143 -15.36572 -14.97343 -14.78939 -14.70875 -14.60307 -14.40133 -14.34896 -14.13553 -13.96796 -13.85893 -13.53271 -13.35782 -13.22899 -13.21281 -13.16088 -13.04067 -12.85470 -12.50399 -12.41846 -12.13360 -11.93796 -11.80417 -11.75715 -11.57321 -11.11300 -10.61212 -10.04803 -9.54852 -8.78252 -8.21213 -6.55395 0.61718 0.80142 0.89619 1.06475 1.39790 1.44175 1.54299 1.83354 2.20154 2.49373 2.61916 2.84917 3.08145 3.29844 3.31008 3.35266 3.64288 3.78798 3.97169 4.02496 4.08949 4.19140 4.32237 4.36805 4.58829 4.60551 4.61087 4.66225 4.72202 4.92039 4.97716 5.07625 5.10380 5.13331 5.20322 5.30117 5.40392 5.77154 5.85080 5.86713 5.97974 6.17790 6.39531 6.57746 6.89659 7.26955 7.63622 8.56525 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.003336 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.295166 B = 8391.543120 C = 9957.740629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.146 4.146 4 C 0.472 3.528 5 O -0.522 6.522 6 O -0.334 6.334 7 C 0.084 3.916 8 C 0.484 3.516 9 O -0.565 6.565 10 N -0.388 5.388 11 C -0.394 4.394 12 H 0.101 0.899 13 C 0.028 3.972 14 N -0.870 5.870 15 Si 0.977 3.023 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.257 1.257 19 C 0.150 3.850 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.161 4.161 23 C -0.119 4.119 24 C -0.213 4.213 25 C 0.285 3.715 26 F -0.190 7.190 27 F -0.208 7.208 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.278 0.722 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.162 0.838 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 4.115 -9.489 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 C -0.203 4.203 4 C 0.314 3.686 5 O -0.410 6.410 6 O -0.248 6.248 7 C 0.008 3.992 8 C 0.275 3.725 9 O -0.450 6.450 10 N -0.097 5.097 11 C -0.520 4.520 12 H 0.118 0.882 13 C -0.179 4.179 14 N -0.502 5.502 15 Si 0.799 3.201 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.181 1.181 19 C 0.055 3.945 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.180 4.180 23 C -0.137 4.137 24 C -0.232 4.232 25 C 0.231 3.769 26 F -0.171 7.171 27 F -0.189 7.189 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.152 0.848 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.179 0.821 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.150 4.140 -9.587 10.506 hybrid contribution 0.718 -1.177 0.419 1.441 sum -0.432 2.963 -9.168 9.645 Atomic orbital electron populations 1.21948 0.87239 1.04779 1.05999 1.21663 1.01812 0.98871 0.87857 1.21933 1.01852 0.90736 1.05816 1.23696 0.77127 0.82494 0.85234 1.90709 1.36142 1.26728 1.87468 1.86453 1.69024 1.54974 1.14385 1.22360 1.00314 0.95356 0.81211 1.20671 0.80672 0.85447 0.85718 1.90202 1.43191 1.24948 1.86632 1.40994 1.41542 1.25094 1.02070 1.19698 0.98086 0.88555 1.45692 0.88160 1.26324 0.96680 1.00089 0.94840 1.70127 1.15187 1.30976 1.33920 0.85162 0.78331 0.76856 0.79709 1.18950 1.20511 1.18091 1.18592 0.95990 0.92745 0.87203 1.21072 1.02389 0.99675 0.91309 1.21169 0.98865 0.96763 0.97514 1.21261 1.01796 0.96596 0.98309 1.21259 0.99898 1.00409 0.92165 1.22809 1.01125 0.96976 1.02337 1.21660 0.75325 0.98143 0.81775 1.92990 1.88159 1.83868 1.52122 1.92985 1.31638 1.97616 1.96652 0.90141 0.87418 0.90581 0.92029 0.87793 0.89939 0.87814 0.88312 0.91237 0.86425 0.84817 0.83885 0.84456 0.82128 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.28 71.98 0.60 -1.90 16 2 C -0.10 -2.23 0.67 -52.93 -0.04 -2.27 16 3 C -0.15 -2.95 8.16 71.98 0.59 -2.37 16 4 C 0.47 14.74 6.44 71.23 0.46 15.20 16 5 O -0.52 -18.58 15.16 21.98 0.33 -18.24 16 6 O -0.33 -12.14 9.56 -45.07 -0.43 -12.57 16 7 C 0.08 3.41 4.77 71.24 0.34 3.75 16 8 C 0.48 23.06 7.65 87.66 0.67 23.73 16 9 O -0.57 -28.12 12.90 15.71 0.20 -27.92 16 10 N -0.39 -19.44 2.62 -458.91 -1.20 -20.64 16 11 C -0.39 -19.09 7.61 84.02 0.64 -18.45 16 12 H 0.10 4.61 7.85 -2.91 -0.02 4.59 16 13 C 0.03 1.34 3.49 84.91 0.30 1.64 16 14 N -0.87 -44.23 11.39 21.65 0.25 -43.99 16 15 Si 0.98 37.23 29.57 68.60 2.03 39.26 16 16 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 17 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 18 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 19 C 0.15 7.50 6.05 38.22 0.23 7.73 16 20 C -0.12 -5.79 7.87 22.41 0.18 -5.61 16 21 C -0.12 -4.86 10.04 22.25 0.22 -4.64 16 22 C -0.16 -5.71 10.04 22.30 0.22 -5.49 16 23 C -0.12 -4.58 10.04 22.25 0.22 -4.36 16 24 C -0.21 -9.92 9.06 22.41 0.20 -9.71 16 25 C 0.28 5.95 3.79 71.98 0.27 6.22 16 26 F -0.19 -3.60 16.30 44.97 0.73 -2.86 16 27 F -0.21 -5.53 15.90 44.97 0.72 -4.82 16 28 H 0.08 1.61 8.11 -2.39 -0.02 1.59 16 29 H 0.11 1.34 7.80 -2.38 -0.02 1.32 16 30 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.06 1.34 7.80 -2.39 -0.02 1.32 16 32 H 0.10 1.59 7.80 -2.39 -0.02 1.57 16 33 H 0.08 1.77 8.11 -2.38 -0.02 1.75 16 34 H 0.10 3.98 8.13 -2.39 -0.02 3.96 16 35 H 0.10 4.13 8.04 -2.39 -0.02 4.11 16 36 H 0.28 13.31 8.32 -92.71 -0.77 12.54 16 37 H 0.12 5.75 5.15 -2.91 -0.02 5.73 16 38 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 40 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 41 H 0.16 7.89 4.50 -64.49 -0.29 7.60 16 42 H 0.14 2.37 8.10 -2.39 -0.02 2.35 16 Total: -1.00 -62.41 360.73 8.51 -53.90 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.78 Total: 34.41 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.11 Total: 3.47 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.96 Total: -64.63 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: 0.10 Total: -58.73 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 1.45 Total: -7.68 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -62.41 8.51 -53.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795860241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.153 kcal (2) G-P(sol) polarization free energy of solvation -62.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds