Wall clock time and date at job start Sat Apr 11 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.31876 * 118.95260 * 239.73107 * 5 2 1 7 7 C 1.32147 * 120.96524 * 179.71261 * 6 5 2 8 8 C 1.39950 * 118.92373 * 0.54904 * 7 6 5 9 9 C 1.47832 * 120.93915 * 179.75173 * 8 7 6 10 10 O 1.21558 * 120.00101 * 179.97438 * 9 8 7 11 11 N 1.34782 * 120.00044 * 359.97331 * 9 8 7 12 12 S 1.65601 * 120.00058 * 179.97438 * 11 9 8 13 13 O 1.42101 * 104.27660 * 181.07420 * 12 11 9 14 14 O 1.42102 * 104.27392 * 308.93089 * 12 11 9 15 15 C 1.81404 * 104.44870 * 65.00333 * 12 11 9 16 16 C 1.52993 * 109.47053 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.47370 * 179.97438 * 16 15 12 18 18 H 1.07997 * 119.99564 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00071 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99552 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47343 * 60.00122 * 21 19 17 23 23 H 1.48501 * 109.46806 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47167 * 299.99682 * 21 19 17 25 25 C 1.39947 * 118.12304 * 359.73009 * 8 7 6 26 26 N 1.31870 * 118.95380 * 60.00090 * 5 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 1.07997 * 120.53852 * 180.25206 * 7 6 5 37 37 H 0.97002 * 119.99903 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.46675 * 300.00135 * 15 12 11 39 39 H 1.09001 * 109.46667 * 59.99926 * 15 12 11 40 40 H 1.09000 * 109.47494 * 300.00226 * 16 15 12 41 41 H 1.09008 * 109.47198 * 60.00124 * 16 15 12 42 42 H 0.97001 * 120.00411 * 179.97438 * 20 19 17 43 43 H 1.07995 * 120.53963 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 2.7935 -1.7775 -1.0855 7 6 3.2511 -2.4342 -2.1370 8 6 2.9251 -1.9731 -3.4175 9 6 3.4174 -2.6702 -4.6245 10 8 3.1234 -2.2552 -5.7286 11 7 4.1924 -3.7661 -4.5009 12 16 4.7434 -4.5474 -5.8531 13 8 5.4885 -5.6452 -5.3442 14 8 3.5769 -4.7545 -6.6378 15 6 5.8438 -3.3471 -6.6526 16 6 6.4238 -3.9586 -7.9294 17 6 7.3374 -2.9613 -8.5940 18 1 7.4889 -1.9884 -8.1502 19 6 7.9800 -3.2909 -9.7685 20 7 7.7952 -4.4754 -10.3092 21 14 9.1130 -2.0548 -10.5918 22 1 10.2183 -1.7026 -9.6649 23 1 9.6759 -2.6484 -11.8312 24 1 8.3450 -0.8308 -10.9343 25 6 2.1195 -0.8336 -3.5230 26 7 1.7012 -0.2421 -2.4179 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 3.8707 -3.3096 -2.0102 37 1 4.4267 -4.0975 -3.6199 38 1 5.2802 -2.4484 -6.9031 39 1 6.6555 -3.0892 -5.9724 40 1 6.9873 -4.8572 -7.6785 41 1 5.6122 -4.2169 -8.6098 42 1 8.2469 -4.7071 -11.1357 43 1 1.8444 -0.4439 -4.4919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808997075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:46 Heat of formation + Delta-G solvation = -74.875670 kcal Electronic energy + Delta-G solvation = -27065.823755 eV Core-core repulsion = 23045.275415 eV Total energy + Delta-G solvation = -4020.548340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.89231 -40.01187 -37.16779 -36.77989 -35.72635 -34.97527 -34.13860 -33.93547 -31.95613 -31.22734 -27.77752 -27.70981 -26.02035 -25.63975 -24.84953 -22.51819 -21.71682 -20.44993 -19.66265 -18.83467 -18.11382 -17.33626 -16.93455 -16.54097 -16.08020 -15.59766 -15.48425 -15.16698 -14.91788 -14.90111 -14.57636 -14.33944 -14.03893 -13.96792 -13.50410 -12.71397 -12.67836 -12.59763 -12.48644 -12.32225 -12.04730 -11.87245 -11.81074 -11.71709 -11.60041 -11.47386 -11.34419 -11.33343 -11.12697 -11.06912 -11.00652 -10.54081 -10.44725 -10.37876 -10.04473 -9.75848 -9.73646 -9.23982 -8.52178 -6.14649 -4.20432 -0.12361 0.37590 0.56361 2.12241 2.53853 3.19761 3.25746 3.26752 3.31489 3.33398 3.54842 3.78741 3.97878 4.01657 4.28904 4.35121 4.38664 4.49741 4.50388 4.55800 4.71205 4.88432 5.15432 5.20612 5.22084 5.29278 5.39227 5.44955 5.49813 5.50721 5.52992 5.64959 5.66848 5.84940 5.86730 5.98372 6.33479 6.39280 6.45197 7.16982 7.24462 7.30678 7.52136 7.77923 8.13258 8.82191 9.44266 10.96341 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018667 B = 0.002399 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.587426 B =11668.086157 C =12440.669363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.004 4.004 3 C -0.137 4.137 4 C -0.130 4.130 5 C 0.352 3.648 6 N -0.513 5.513 7 C 0.192 3.808 8 C -0.255 4.255 9 C 0.593 3.407 10 O -0.476 6.476 11 N -1.055 6.055 12 S 2.564 3.436 13 O -0.949 6.949 14 O -0.934 6.934 15 C -0.574 4.574 16 C 0.030 3.970 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.902 3.098 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.219 3.781 26 N -0.514 5.514 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.176 0.824 37 H 0.426 0.574 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.266 0.734 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.210 8.633 23.968 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.006 4.006 3 C -0.195 4.195 4 C -0.188 4.188 5 C 0.086 3.914 6 N -0.226 5.226 7 C 0.025 3.975 8 C -0.265 4.265 9 C 0.378 3.622 10 O -0.348 6.348 11 N -0.816 5.816 12 S 2.665 3.335 13 O -0.940 6.940 14 O -0.924 6.924 15 C -0.708 4.708 16 C -0.009 4.009 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.200 1.200 25 C 0.052 3.948 26 N -0.226 5.226 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.192 0.808 37 H 0.261 0.739 38 H 0.150 0.850 39 H 0.141 0.859 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -13.011 8.399 23.610 28.236 hybrid contribution 1.457 0.381 -0.845 1.727 sum -11.554 8.779 22.764 26.996 Atomic orbital electron populations 1.21862 0.92073 1.02401 1.03167 1.19520 0.96601 0.95186 0.89310 1.21862 1.01161 0.93328 1.03167 1.21743 1.01910 1.00369 0.94736 1.23509 0.87032 0.87638 0.93195 1.68360 1.11872 1.08686 1.33707 1.23555 0.91265 0.96018 0.86708 1.21686 1.07034 1.02127 0.95621 1.17651 0.76635 0.78971 0.88927 1.91015 1.54025 1.63670 1.26071 1.55443 1.58878 1.38705 1.28531 1.06850 0.76522 0.76540 0.73616 1.93603 1.73349 1.48906 1.78148 1.93608 1.46669 1.84238 1.67872 1.30338 1.13053 1.15374 1.12076 1.18998 0.97111 0.97088 0.87744 1.20924 1.26971 1.00195 1.07914 0.92007 1.25060 0.96807 0.95597 0.96973 1.69936 1.42873 1.20051 1.19916 0.86501 0.80710 0.81133 0.78762 1.20077 1.21044 1.20019 1.23645 0.85571 0.87292 0.98305 1.68366 1.23668 1.32091 0.98497 0.91211 0.91250 0.92608 0.91257 0.92565 0.91201 0.91839 0.91785 0.92085 0.80753 0.73856 0.84972 0.85917 0.94695 0.94508 0.92410 0.79549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.37 37.16 0.31 -0.54 16 2 C 0.00 -0.03 0.92 -155.66 -0.14 -0.17 16 3 C -0.14 -0.86 8.37 37.15 0.31 -0.55 16 4 C -0.13 -0.81 7.66 37.16 0.28 -0.52 16 5 C 0.35 3.31 6.25 -157.06 -0.98 2.33 16 6 N -0.51 -4.78 8.98 -10.39 -0.09 -4.87 16 7 C 0.19 1.62 10.81 -16.78 -0.18 1.43 16 8 C -0.26 -2.58 5.91 -104.69 -0.62 -3.20 16 9 C 0.59 7.53 7.52 -12.33 -0.09 7.43 16 10 O -0.48 -7.72 14.54 -11.81 -0.17 -7.89 16 11 N -1.06 -12.50 5.56 30.53 0.17 -12.33 16 12 S 2.56 44.25 5.11 -107.50 -0.55 43.70 16 13 O -0.95 -17.86 18.08 -57.54 -1.04 -18.91 16 14 O -0.93 -19.61 17.04 -64.79 -1.10 -20.71 16 15 C -0.57 -10.93 5.82 37.15 0.22 -10.71 16 16 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 17 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 21 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.22 2.20 10.88 -16.78 -0.18 2.02 16 26 N -0.51 -5.16 9.77 -10.39 -0.10 -5.26 16 27 H 0.07 0.48 8.01 -51.93 -0.42 0.06 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.49 8.01 -51.93 -0.42 0.07 16 33 H 0.06 0.43 8.04 -51.93 -0.42 0.01 16 34 H 0.06 0.44 8.03 -51.93 -0.42 0.02 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.18 0.86 6.54 -52.49 -0.34 0.51 16 37 H 0.43 3.20 6.93 -34.47 -0.24 2.97 16 38 H 0.13 2.46 7.19 -51.92 -0.37 2.08 16 39 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.19 1.66 7.74 -52.49 -0.41 1.26 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -36.51 376.95 -9.07 -45.58 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.95 Total: -0.65 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.63 Total: -14.95 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.71 Total: -48.02 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -2.32 Total: -47.51 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 44.25 SS G_CDS: -0.55 Total: 43.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.51 -9.07 -45.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808997075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.295 kcal (2) G-P(sol) polarization free energy of solvation -36.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds