Wall clock time and date at job start Sat Apr 11 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.31876 * 118.95260 * 239.73107 * 5 2 1 7 7 C 1.32147 * 120.96524 * 179.71261 * 6 5 2 8 8 C 1.39950 * 118.92373 * 0.54904 * 7 6 5 9 9 C 1.47832 * 120.93915 * 179.75173 * 8 7 6 10 10 O 1.21558 * 120.00101 * 179.97438 * 9 8 7 11 11 N 1.34782 * 120.00044 * 359.97331 * 9 8 7 12 12 S 1.65601 * 120.00058 * 179.97438 * 11 9 8 13 13 O 1.42101 * 104.27660 * 181.07420 * 12 11 9 14 14 O 1.42102 * 104.27392 * 308.93089 * 12 11 9 15 15 C 1.81404 * 104.44870 * 65.00333 * 12 11 9 16 16 C 1.52993 * 109.47053 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.47370 * 179.97438 * 16 15 12 18 18 H 1.07997 * 119.99564 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00071 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99552 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47343 * 60.00122 * 21 19 17 23 23 H 1.48501 * 109.46806 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47167 * 299.99682 * 21 19 17 25 25 C 1.39947 * 118.12304 * 359.73009 * 8 7 6 26 26 N 1.31870 * 118.95380 * 60.00090 * 5 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 1.07997 * 120.53852 * 180.25206 * 7 6 5 37 37 H 0.97002 * 119.99903 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.46675 * 300.00135 * 15 12 11 39 39 H 1.09001 * 109.46667 * 59.99926 * 15 12 11 40 40 H 1.09000 * 109.47494 * 300.00226 * 16 15 12 41 41 H 1.09008 * 109.47198 * 60.00124 * 16 15 12 42 42 H 0.97001 * 120.00411 * 179.97438 * 20 19 17 43 43 H 1.07995 * 120.53963 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 2.7935 -1.7775 -1.0855 7 6 3.2511 -2.4342 -2.1370 8 6 2.9251 -1.9731 -3.4175 9 6 3.4174 -2.6702 -4.6245 10 8 3.1234 -2.2552 -5.7286 11 7 4.1924 -3.7661 -4.5009 12 16 4.7434 -4.5474 -5.8531 13 8 5.4885 -5.6452 -5.3442 14 8 3.5769 -4.7545 -6.6378 15 6 5.8438 -3.3471 -6.6526 16 6 6.4238 -3.9586 -7.9294 17 6 7.3374 -2.9613 -8.5940 18 1 7.4889 -1.9884 -8.1502 19 6 7.9800 -3.2909 -9.7685 20 7 7.7952 -4.4754 -10.3092 21 14 9.1130 -2.0548 -10.5918 22 1 10.2183 -1.7026 -9.6649 23 1 9.6759 -2.6484 -11.8312 24 1 8.3450 -0.8308 -10.9343 25 6 2.1195 -0.8336 -3.5230 26 7 1.7012 -0.2421 -2.4179 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 3.8707 -3.3096 -2.0102 37 1 4.4267 -4.0975 -3.6199 38 1 5.2802 -2.4484 -6.9031 39 1 6.6555 -3.0892 -5.9724 40 1 6.9873 -4.8572 -7.6785 41 1 5.6122 -4.2169 -8.6098 42 1 8.2469 -4.7071 -11.1357 43 1 1.8444 -0.4439 -4.4919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808997075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:45 Heat of formation + Delta-G solvation = -101.606887 kcal Electronic energy + Delta-G solvation = -27066.982908 eV Core-core repulsion = 23045.275415 eV Total energy + Delta-G solvation = -4021.707493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.65982 -41.05037 -38.35003 -37.70880 -37.27106 -36.07816 -35.89077 -34.93461 -33.18850 -32.72446 -28.27151 -28.18809 -27.66650 -26.78130 -25.55856 -23.78250 -23.33037 -21.10340 -20.88212 -19.88689 -19.35396 -18.70053 -18.06408 -17.59731 -17.42959 -16.80330 -16.62490 -16.55403 -16.38140 -15.92909 -15.53263 -15.21022 -14.92705 -14.62719 -14.60678 -14.48652 -13.91932 -13.77677 -13.40312 -13.35764 -13.28429 -13.12933 -12.94130 -12.88249 -12.84922 -12.54855 -12.38559 -12.28458 -12.21055 -12.10415 -12.09978 -11.95386 -11.85671 -11.77347 -11.50869 -11.10874 -10.79532 -10.64805 -10.45785 -8.27290 -6.41066 -1.08627 -0.90080 -0.15208 1.10697 1.31754 1.40268 1.43720 1.51808 2.36010 2.46208 2.51540 2.59012 2.86559 2.88296 3.06194 3.12214 3.27753 3.54644 3.73038 3.81451 3.97960 3.99265 3.99281 4.03862 4.32535 4.51741 4.69295 4.78698 4.79561 4.89383 4.93003 5.00808 5.03644 5.12791 5.23099 5.23734 5.30994 5.36621 5.47332 5.50403 5.66394 5.68541 6.03660 6.17344 6.71339 6.79997 7.28730 8.84722 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018667 B = 0.002399 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.587426 B =11668.086157 C =12440.669363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.008 4.008 3 C -0.133 4.133 4 C -0.125 4.125 5 C 0.347 3.653 6 N -0.520 5.520 7 C 0.202 3.798 8 C -0.262 4.262 9 C 0.599 3.401 10 O -0.514 6.514 11 N -1.033 6.033 12 S 2.603 3.397 13 O -0.963 6.963 14 O -0.973 6.973 15 C -0.578 4.578 16 C 0.022 3.978 17 C -0.540 4.540 18 H 0.074 0.926 19 C -0.002 4.002 20 N -0.932 5.932 21 Si 0.973 3.027 22 H -0.261 1.261 23 H -0.283 1.283 24 H -0.267 1.267 25 C 0.215 3.785 26 N -0.525 5.525 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.211 0.789 37 H 0.448 0.552 38 H 0.137 0.863 39 H 0.153 0.847 40 H 0.017 0.983 41 H 0.006 0.994 42 H 0.268 0.732 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.927 10.066 26.438 30.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.010 4.010 3 C -0.191 4.191 4 C -0.182 4.182 5 C 0.082 3.918 6 N -0.233 5.233 7 C 0.034 3.966 8 C -0.272 4.272 9 C 0.386 3.614 10 O -0.387 6.387 11 N -0.800 5.800 12 S 2.702 3.298 13 O -0.954 6.954 14 O -0.963 6.963 15 C -0.711 4.711 16 C -0.017 4.017 17 C -0.580 4.580 18 H 0.092 0.908 19 C -0.201 4.201 20 N -0.571 5.571 21 Si 0.797 3.203 22 H -0.186 1.186 23 H -0.208 1.208 24 H -0.191 1.191 25 C 0.048 3.952 26 N -0.237 5.237 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.227 0.773 37 H 0.289 0.711 38 H 0.155 0.845 39 H 0.171 0.829 40 H 0.035 0.965 41 H 0.025 0.975 42 H 0.077 0.923 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -12.711 9.832 26.114 30.662 hybrid contribution 1.289 -0.050 -1.481 1.964 sum -11.422 9.782 24.633 28.861 Atomic orbital electron populations 1.21842 0.91370 1.02186 1.03716 1.19707 0.97128 0.95486 0.88721 1.21841 1.00733 0.92844 1.03710 1.21709 1.01433 1.00127 0.94962 1.24090 0.86399 0.87599 0.93752 1.68489 1.12215 1.08871 1.33723 1.24122 0.90434 0.96380 0.85637 1.21413 1.08263 1.02470 0.95039 1.17965 0.75742 0.78447 0.89201 1.91010 1.55407 1.64608 1.27723 1.54813 1.58350 1.38374 1.28434 1.05398 0.75240 0.75572 0.73631 1.93580 1.73706 1.49559 1.78509 1.93562 1.48089 1.84757 1.69859 1.30241 1.14736 1.15864 1.10287 1.18833 0.96026 0.96666 0.90155 1.21440 1.27100 1.01045 1.08366 0.90796 1.26090 0.98594 0.97581 0.97841 1.70077 1.44260 1.22239 1.20522 0.85375 0.78735 0.78501 0.77714 1.18566 1.20828 1.19144 1.23809 0.85345 0.87328 0.98722 1.68442 1.24190 1.32409 0.98701 0.92182 0.89197 0.93176 0.89215 0.93168 0.92178 0.92461 0.92435 0.90196 0.77259 0.71117 0.84525 0.82861 0.96486 0.97524 0.92308 0.79190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.37 71.98 0.60 -0.81 16 2 C -0.01 -0.10 0.92 -52.93 -0.05 -0.15 16 3 C -0.13 -1.43 8.37 71.98 0.60 -0.83 16 4 C -0.12 -1.27 7.66 71.98 0.55 -0.71 16 5 C 0.35 5.99 6.25 138.70 0.87 6.86 16 6 N -0.52 -8.57 8.98 -186.79 -1.68 -10.25 16 7 C 0.20 2.88 10.81 85.06 0.92 3.79 16 8 C -0.26 -4.89 5.91 -19.91 -0.12 -5.01 16 9 C 0.60 14.46 7.52 86.78 0.65 15.11 16 10 O -0.51 -16.55 14.54 12.48 0.18 -16.37 16 11 N -1.03 -22.59 5.56 -175.60 -0.98 -23.57 16 12 S 2.60 88.68 5.11 -56.49 -0.29 88.40 16 13 O -0.96 -35.41 18.08 -127.65 -2.31 -37.72 16 14 O -0.97 -41.39 17.04 -120.72 -2.06 -43.45 16 15 C -0.58 -21.91 5.82 71.98 0.42 -21.49 16 16 C 0.02 1.16 4.98 29.85 0.15 1.31 16 17 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 18 H 0.07 3.81 7.74 -2.91 -0.02 3.78 16 19 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 20 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 21 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 C 0.21 4.16 10.88 85.06 0.93 5.08 16 26 N -0.52 -10.03 9.77 -186.80 -1.82 -11.85 16 27 H 0.06 0.76 8.01 -2.39 -0.02 0.74 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.77 8.01 -2.39 -0.02 0.75 16 33 H 0.06 0.66 8.04 -2.39 -0.02 0.64 16 34 H 0.06 0.66 8.03 -2.39 -0.02 0.65 16 35 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.21 1.25 6.54 -2.91 -0.02 1.23 16 37 H 0.45 5.40 6.93 -96.74 -0.67 4.73 16 38 H 0.14 5.07 7.19 -2.39 -0.02 5.05 16 39 H 0.15 4.75 8.14 -2.39 -0.02 4.73 16 40 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 42 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.19 3.38 7.74 -2.91 -0.02 3.36 16 Total: -1.00 -80.40 376.95 -0.05 -80.45 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.37 Total: 11.41 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 6.22 Total: -26.31 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -4.19 Total: -101.83 kcal Atomic # 8 Polarization: -93.35 SS G_CDS: -4.18 Total: -97.54 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 88.68 SS G_CDS: -0.29 Total: 88.40 kcal Total: -80.40 -0.05 -80.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808997075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.153 kcal (2) G-P(sol) polarization free energy of solvation -80.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds