Wall clock time and date at job start Sat Apr 11 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00188 * 2 1 4 4 O 1.20824 * 119.99950 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00230 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47437 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47116 * 184.65045 * 6 5 3 8 8 C 1.36776 * 120.00102 * 94.73514 * 7 6 5 9 9 H 1.07998 * 119.99542 * 303.46402 * 8 7 6 10 10 C 1.39089 * 120.00095 * 123.19130 * 8 7 6 11 11 N 1.31341 * 119.99722 * 174.58113 * 10 8 7 12 12 Si 1.86796 * 120.00399 * 354.57992 * 10 8 7 13 13 H 1.48501 * 109.47201 * 95.31677 * 12 10 8 14 14 H 1.48494 * 109.47523 * 215.32111 * 12 10 8 15 15 H 1.48505 * 109.46635 * 335.31980 * 12 10 8 16 16 C 1.34777 * 120.00030 * 274.72918 * 7 6 5 17 17 O 1.21670 * 119.99825 * 354.00524 * 16 7 6 18 18 C 1.47139 * 120.00226 * 174.00895 * 16 7 6 19 19 N 1.30851 * 126.19025 * 352.77525 * 18 16 7 20 20 N 1.26253 * 116.22633 * 179.97438 * 19 18 16 21 21 C 1.29850 * 117.79425 * 359.97438 * 20 19 18 22 22 C 1.50705 * 125.53493 * 180.02562 * 21 20 19 23 23 C 1.53005 * 109.47228 * 59.97332 * 22 21 20 24 24 C 1.52996 * 109.47131 * 179.97438 * 22 21 20 25 25 C 1.53000 * 109.46784 * 299.97840 * 22 21 20 26 26 S 1.71269 * 108.92784 * 359.76808 * 21 20 19 27 27 H 1.08998 * 109.47483 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46971 * 300.00225 * 1 2 3 29 29 H 1.09005 * 109.46881 * 59.99998 * 1 2 3 30 30 H 1.09002 * 109.47016 * 60.00144 * 5 3 2 31 31 H 1.09001 * 109.47094 * 300.00450 * 5 3 2 32 32 H 1.09000 * 109.46855 * 64.65099 * 6 5 3 33 33 H 1.09001 * 109.46870 * 304.65205 * 6 5 3 34 34 H 0.97002 * 120.00072 * 180.02562 * 11 10 8 35 35 H 1.09002 * 109.46491 * 60.00201 * 23 22 21 36 36 H 1.08998 * 109.46978 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.47133 * 300.00684 * 23 22 21 38 38 H 1.08996 * 109.47161 * 60.00035 * 24 22 21 39 39 H 1.08998 * 109.47263 * 179.97438 * 24 22 21 40 40 H 1.08996 * 109.47113 * 299.99479 * 24 22 21 41 41 H 1.08992 * 109.47653 * 59.99960 * 25 22 21 42 42 H 1.09007 * 109.46683 * 180.02562 * 25 22 21 43 43 H 1.09007 * 109.47099 * 299.99361 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7420 0.0011 7 7 5.4589 2.8199 -0.1103 8 6 6.0435 2.9813 -1.3363 9 1 5.8434 2.2737 -2.1272 10 6 6.8911 4.0599 -1.5660 11 7 7.5355 4.1574 -2.7063 12 14 7.1130 5.3698 -0.2528 13 1 8.3181 5.0593 0.5574 14 1 7.2795 6.6960 -0.8996 15 1 5.9175 5.3952 0.6279 16 6 6.2248 2.7327 0.9952 17 8 5.7046 2.6990 2.0946 18 6 7.6901 2.6782 0.8728 19 7 8.3689 2.5729 -0.2409 20 7 9.6260 2.5432 -0.1274 21 6 10.1280 2.6192 1.0677 22 6 11.5970 2.6005 1.4035 23 6 12.2913 3.7807 0.7208 24 6 11.7752 2.7112 2.9190 25 6 12.2160 1.2907 0.9115 26 16 8.8497 2.7512 2.1999 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.9565 0.7806 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 3.6810 3.2149 0.9298 33 1 3.5432 3.2563 -0.8443 34 1 8.1269 4.9094 -2.8664 35 1 11.8503 4.7138 1.0713 36 1 13.3537 3.7674 0.9640 37 1 12.1643 3.7019 -0.3589 38 1 11.2806 1.8705 3.4054 39 1 12.8377 2.6973 3.1620 40 1 11.3343 3.6444 3.2695 41 1 12.0890 1.2118 -0.1682 42 1 13.2784 1.2770 1.1548 43 1 11.7214 0.4498 1.3979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:56 Heat of formation + Delta-G solvation = -41.142542 kcal Electronic energy + Delta-G solvation = -28200.582937 eV Core-core repulsion = 24181.497375 eV Total energy + Delta-G solvation = -4019.085562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.62204 -40.27670 -38.91231 -36.95486 -36.41159 -35.12771 -32.70957 -31.18846 -30.06803 -27.74540 -27.48084 -27.26974 -26.53269 -24.97026 -23.83361 -21.81046 -20.76804 -20.08096 -19.16655 -18.24175 -17.55482 -17.03846 -16.50438 -16.41896 -15.99792 -15.28436 -15.06901 -14.74085 -14.41121 -13.98647 -13.96871 -13.87235 -13.70414 -13.27325 -12.88992 -12.79319 -12.58733 -12.41114 -12.34549 -12.19393 -11.99269 -11.71715 -11.68566 -11.56645 -11.23014 -11.05062 -11.00058 -10.90221 -10.73828 -10.54270 -10.33196 -10.21689 -9.93036 -9.68552 -9.23898 -9.16116 -8.92636 -8.66768 -7.83679 -6.47977 -4.27331 0.68510 1.38359 1.92094 2.41699 2.77699 2.91575 3.04272 3.15017 3.26447 3.92189 4.02997 4.09610 4.35153 4.75399 4.85125 4.94605 5.01540 5.10531 5.12185 5.17145 5.28008 5.43502 5.46379 5.47367 5.56707 5.57238 5.69843 5.70472 5.80351 5.87251 5.91587 5.93414 5.98644 6.12212 6.28475 6.30795 6.34192 6.45498 6.59430 7.42536 7.63945 7.92601 8.35201 8.71552 9.07315 9.28185 9.39705 10.59410 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.003587 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.165084 B = 7803.537093 C = 8498.958419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.470 3.530 4 O -0.509 6.509 5 C -0.126 4.126 6 C 0.125 3.875 7 N -0.428 5.428 8 C -0.342 4.342 9 H 0.109 0.891 10 C 0.116 3.884 11 N -0.824 5.824 12 Si 0.843 3.157 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.257 1.257 16 C 0.540 3.460 17 O -0.582 6.582 18 C -0.026 4.026 19 N -0.146 5.146 20 N -0.266 5.266 21 C -0.013 4.013 22 C 0.018 3.982 23 C -0.135 4.135 24 C -0.153 4.153 25 C -0.133 4.133 26 S 0.136 5.864 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.277 0.723 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -5.487 7.322 9.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.313 3.687 4 O -0.397 6.397 5 C -0.165 4.165 6 C 0.002 3.998 7 N -0.148 5.148 8 C -0.471 4.471 9 H 0.126 0.874 10 C -0.097 4.097 11 N -0.456 5.456 12 Si 0.669 3.331 13 H -0.200 1.200 14 H -0.204 1.204 15 H -0.180 1.180 16 C 0.327 3.673 17 O -0.466 6.466 18 C -0.304 4.304 19 N 0.014 4.986 20 N -0.105 5.105 21 C -0.290 4.290 22 C 0.014 3.986 23 C -0.194 4.194 24 C -0.211 4.211 25 C -0.192 4.192 26 S 0.381 5.619 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.591 -5.116 7.408 9.369 hybrid contribution 0.032 0.867 0.428 0.967 sum 2.623 -4.250 7.837 9.293 Atomic orbital electron populations 1.23210 0.76931 1.03298 1.02438 1.86533 1.23040 1.33985 1.84388 1.23877 0.92143 0.81045 0.71675 1.90652 1.67325 1.36264 1.45413 1.21814 0.86464 1.01849 1.06387 1.21403 0.81729 0.92771 1.03934 1.43418 1.03626 1.61147 1.06565 1.18935 1.28483 1.11359 0.88313 0.87382 1.25304 0.93795 0.95790 0.94829 1.69514 1.23670 1.29749 1.22683 0.87348 0.80024 0.82783 0.82967 1.19984 1.20420 1.18048 1.17223 0.82836 0.81677 0.85563 1.90718 1.73026 1.56501 1.26320 1.29776 1.01393 1.08601 0.90641 1.72903 0.96385 1.08472 1.20862 1.71435 1.05413 1.14020 1.19661 1.29291 1.02012 1.04715 0.93031 1.19114 0.85224 0.98112 0.96197 1.21855 0.99520 0.96246 1.01784 1.22061 1.02927 1.02756 0.93348 1.21841 0.99969 0.94767 1.02632 1.84355 0.97891 1.66280 1.13423 0.88423 0.92070 0.91989 0.86914 0.87537 0.90380 0.88824 0.91259 0.92616 0.91621 0.91096 0.91755 0.90839 0.91901 0.91133 0.91689 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.15 10.57 -39.25 -0.41 -5.57 16 3 C 0.47 7.69 7.96 36.01 0.29 7.98 16 4 O -0.51 -9.44 15.68 -18.75 -0.29 -9.74 16 5 C -0.13 -2.15 6.10 -27.88 -0.17 -2.32 16 6 C 0.13 2.55 4.72 -4.05 -0.02 2.53 16 7 N -0.43 -10.16 1.97 -116.15 -0.23 -10.38 16 8 C -0.34 -8.77 8.47 -15.03 -0.13 -8.90 16 9 H 0.11 2.89 8.06 -52.49 -0.42 2.47 16 10 C 0.12 3.09 3.52 -17.45 -0.06 3.03 16 11 N -0.82 -22.66 13.95 55.50 0.77 -21.88 16 12 Si 0.84 21.18 24.07 -169.99 -4.09 17.09 16 13 H -0.27 -6.80 6.13 56.52 0.35 -6.45 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.26 -6.61 6.96 56.52 0.39 -6.21 16 16 C 0.54 13.17 5.62 -12.65 -0.07 13.10 16 17 O -0.58 -14.50 16.61 5.22 0.09 -14.41 16 18 C -0.03 -0.61 4.47 -14.36 -0.06 -0.68 16 19 N -0.15 -3.55 7.03 32.91 0.23 -3.32 16 20 N -0.27 -5.84 11.59 32.65 0.38 -5.46 16 21 C -0.01 -0.24 5.89 -13.11 -0.08 -0.32 16 22 C 0.02 0.24 0.99 -155.66 -0.15 0.09 16 23 C -0.14 -1.71 8.46 37.16 0.31 -1.40 16 24 C -0.15 -1.64 7.56 37.16 0.28 -1.36 16 25 C -0.13 -1.57 8.46 37.16 0.31 -1.25 16 26 S 0.14 2.58 21.30 -107.50 -2.29 0.29 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.11 1.82 8.14 -51.93 -0.42 1.39 16 31 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 32 H 0.08 1.64 7.49 -51.93 -0.39 1.26 16 33 H 0.09 1.88 7.83 -51.93 -0.41 1.48 16 34 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.67 7.96 -51.93 -0.41 0.26 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -31.59 371.00 -5.05 -36.64 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.31 Total: -0.79 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 1.52 Total: 11.93 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 1.16 Total: -41.05 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.62 Total: -29.72 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.09 Total: 17.09 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.29 Total: 0.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.59 -5.05 -36.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.499 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds