Wall clock time and date at job start Sat Apr 11 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00188 * 2 1 4 4 O 1.20824 * 119.99950 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00230 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47437 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47116 * 184.65045 * 6 5 3 8 8 C 1.36776 * 120.00102 * 94.73514 * 7 6 5 9 9 H 1.07998 * 119.99542 * 303.46402 * 8 7 6 10 10 C 1.39089 * 120.00095 * 123.19130 * 8 7 6 11 11 N 1.31341 * 119.99722 * 174.58113 * 10 8 7 12 12 Si 1.86796 * 120.00399 * 354.57992 * 10 8 7 13 13 H 1.48501 * 109.47201 * 95.31677 * 12 10 8 14 14 H 1.48494 * 109.47523 * 215.32111 * 12 10 8 15 15 H 1.48505 * 109.46635 * 335.31980 * 12 10 8 16 16 C 1.34777 * 120.00030 * 274.72918 * 7 6 5 17 17 O 1.21670 * 119.99825 * 354.00524 * 16 7 6 18 18 C 1.47139 * 120.00226 * 174.00895 * 16 7 6 19 19 N 1.30851 * 126.19025 * 352.77525 * 18 16 7 20 20 N 1.26253 * 116.22633 * 179.97438 * 19 18 16 21 21 C 1.29850 * 117.79425 * 359.97438 * 20 19 18 22 22 C 1.50705 * 125.53493 * 180.02562 * 21 20 19 23 23 C 1.53005 * 109.47228 * 59.97332 * 22 21 20 24 24 C 1.52996 * 109.47131 * 179.97438 * 22 21 20 25 25 C 1.53000 * 109.46784 * 299.97840 * 22 21 20 26 26 S 1.71269 * 108.92784 * 359.76808 * 21 20 19 27 27 H 1.08998 * 109.47483 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46971 * 300.00225 * 1 2 3 29 29 H 1.09005 * 109.46881 * 59.99998 * 1 2 3 30 30 H 1.09002 * 109.47016 * 60.00144 * 5 3 2 31 31 H 1.09001 * 109.47094 * 300.00450 * 5 3 2 32 32 H 1.09000 * 109.46855 * 64.65099 * 6 5 3 33 33 H 1.09001 * 109.46870 * 304.65205 * 6 5 3 34 34 H 0.97002 * 120.00072 * 180.02562 * 11 10 8 35 35 H 1.09002 * 109.46491 * 60.00201 * 23 22 21 36 36 H 1.08998 * 109.46978 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.47133 * 300.00684 * 23 22 21 38 38 H 1.08996 * 109.47161 * 60.00035 * 24 22 21 39 39 H 1.08998 * 109.47263 * 179.97438 * 24 22 21 40 40 H 1.08996 * 109.47113 * 299.99479 * 24 22 21 41 41 H 1.08992 * 109.47653 * 59.99960 * 25 22 21 42 42 H 1.09007 * 109.46683 * 180.02562 * 25 22 21 43 43 H 1.09007 * 109.47099 * 299.99361 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7420 0.0011 7 7 5.4589 2.8199 -0.1103 8 6 6.0435 2.9813 -1.3363 9 1 5.8434 2.2737 -2.1272 10 6 6.8911 4.0599 -1.5660 11 7 7.5355 4.1574 -2.7063 12 14 7.1130 5.3698 -0.2528 13 1 8.3181 5.0593 0.5574 14 1 7.2795 6.6960 -0.8996 15 1 5.9175 5.3952 0.6279 16 6 6.2248 2.7327 0.9952 17 8 5.7046 2.6990 2.0946 18 6 7.6901 2.6782 0.8728 19 7 8.3689 2.5729 -0.2409 20 7 9.6260 2.5432 -0.1274 21 6 10.1280 2.6192 1.0677 22 6 11.5970 2.6005 1.4035 23 6 12.2913 3.7807 0.7208 24 6 11.7752 2.7112 2.9190 25 6 12.2160 1.2907 0.9115 26 16 8.8497 2.7512 2.1999 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.9565 0.7806 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 3.6810 3.2149 0.9298 33 1 3.5432 3.2563 -0.8443 34 1 8.1269 4.9094 -2.8664 35 1 11.8503 4.7138 1.0713 36 1 13.3537 3.7674 0.9640 37 1 12.1643 3.7019 -0.3589 38 1 11.2806 1.8705 3.4054 39 1 12.8377 2.6973 3.1620 40 1 11.3343 3.6444 3.2695 41 1 12.0890 1.2118 -0.1682 42 1 13.2784 1.2770 1.1548 43 1 11.7214 0.4498 1.3979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:55 Heat of formation + Delta-G solvation = -61.614090 kcal Electronic energy + Delta-G solvation = -28201.470650 eV Core-core repulsion = 24181.497375 eV Total energy + Delta-G solvation = -4019.973275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.30457 -41.59121 -40.68450 -38.09223 -37.69544 -36.96883 -34.52847 -32.92164 -31.63828 -28.85597 -28.38042 -28.22855 -28.07728 -26.81284 -25.42284 -23.35855 -22.17589 -21.59850 -20.81291 -19.87326 -18.95319 -18.59152 -18.03138 -17.67854 -17.50349 -16.89693 -16.76343 -16.37967 -15.96050 -15.71405 -15.17111 -15.09425 -14.97439 -14.77728 -14.56146 -14.31695 -14.04645 -13.71673 -13.54854 -13.28865 -13.22111 -13.03411 -12.92724 -12.85015 -12.72686 -12.66293 -12.27643 -12.17298 -12.07937 -12.04381 -11.80065 -11.64821 -11.55898 -11.47530 -10.95730 -10.82251 -10.61914 -10.49950 -9.73583 -8.50777 -6.31468 -0.93869 -0.21609 0.30817 0.95392 1.10594 1.10809 1.12971 1.26392 1.64092 2.04977 2.11984 2.40884 2.93079 3.02222 3.48906 3.71598 3.72943 3.87467 3.95366 4.06502 4.10041 4.20547 4.32277 4.34492 4.42367 4.47510 4.67965 4.70963 4.71147 4.72410 4.79951 4.91536 4.92241 4.93001 4.99274 5.17351 5.30604 5.31599 5.36462 5.56648 5.66458 6.30268 6.66232 6.79494 7.09707 7.45287 7.62986 8.60164 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.003587 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.165084 B = 7803.537093 C = 8498.958419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.479 3.521 4 O -0.534 6.534 5 C -0.117 4.117 6 C 0.124 3.876 7 N -0.437 5.437 8 C -0.339 4.339 9 H 0.090 0.910 10 C 0.098 3.902 11 N -0.860 5.860 12 Si 0.873 3.127 13 H -0.272 1.272 14 H -0.275 1.275 15 H -0.269 1.269 16 C 0.543 3.457 17 O -0.591 6.591 18 C -0.075 4.075 19 N -0.165 5.165 20 N -0.301 5.301 21 C 0.009 3.991 22 C 0.010 3.990 23 C -0.134 4.134 24 C -0.152 4.152 25 C -0.130 4.130 26 S 0.191 5.809 27 H 0.135 0.865 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.276 0.724 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.102 0.898 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -6.435 9.401 12.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.323 3.677 4 O -0.424 6.424 5 C -0.155 4.155 6 C 0.001 3.999 7 N -0.157 5.157 8 C -0.468 4.468 9 H 0.108 0.892 10 C -0.112 4.112 11 N -0.494 5.494 12 Si 0.699 3.301 13 H -0.197 1.197 14 H -0.201 1.201 15 H -0.194 1.194 16 C 0.329 3.671 17 O -0.476 6.476 18 C -0.354 4.354 19 N -0.006 5.006 20 N -0.141 5.141 21 C -0.268 4.268 22 C 0.006 3.994 23 C -0.192 4.192 24 C -0.210 4.210 25 C -0.188 4.188 26 S 0.436 5.564 27 H 0.153 0.847 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.124 0.876 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.121 0.879 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.203 -6.080 9.483 12.023 hybrid contribution -0.372 1.047 -0.050 1.112 sum 3.832 -5.033 9.433 11.357 Atomic orbital electron populations 1.23593 0.74536 1.05849 1.02644 1.86505 1.25284 1.32355 1.83711 1.23558 0.91686 0.81366 0.71108 1.90646 1.67755 1.37228 1.46795 1.21593 0.87489 0.99418 1.07024 1.21410 0.80032 0.95140 1.03301 1.43478 1.04749 1.61608 1.05840 1.18661 1.28798 1.10839 0.88470 0.89220 1.25536 0.93751 0.96625 0.95333 1.69564 1.25381 1.30566 1.23864 0.86899 0.79345 0.82012 0.81857 1.19727 1.20063 1.19362 1.17396 0.83567 0.80716 0.85401 1.90687 1.73594 1.56806 1.26521 1.29706 1.01697 1.11300 0.92650 1.72880 0.97556 1.07934 1.22228 1.71423 1.04665 1.16583 1.21404 1.30389 1.04338 1.00111 0.91916 1.19596 0.81827 0.99459 0.98553 1.21881 1.01867 0.95281 1.00215 1.22117 1.05554 1.02738 0.90620 1.21851 1.02200 0.93555 1.01234 1.84065 0.96191 1.64845 1.11282 0.84730 0.91892 0.91847 0.86114 0.87062 0.91246 0.89090 0.91385 0.93507 0.87591 0.93327 0.91360 0.87177 0.92239 0.93194 0.87888 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.36 -9.81 10.57 -51.40 -0.54 -10.35 16 3 C 0.48 15.50 7.96 71.24 0.57 16.07 16 4 O -0.53 -19.82 15.68 21.97 0.34 -19.48 16 5 C -0.12 -3.98 6.10 29.85 0.18 -3.80 16 6 C 0.12 5.18 4.72 86.38 0.41 5.59 16 7 N -0.44 -21.21 1.97 -639.61 -1.26 -22.47 16 8 C -0.34 -17.96 8.47 84.13 0.71 -17.25 16 9 H 0.09 5.02 8.06 -2.91 -0.02 4.99 16 10 C 0.10 5.34 3.52 84.97 0.30 5.63 16 11 N -0.86 -48.77 13.95 21.69 0.30 -48.47 16 12 Si 0.87 44.20 24.07 68.60 1.65 45.86 16 13 H -0.27 -13.41 6.13 99.48 0.61 -12.80 16 14 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 15 H -0.27 -14.01 6.96 99.48 0.69 -13.32 16 16 C 0.54 26.71 5.62 86.58 0.49 27.20 16 17 O -0.59 -29.50 16.61 -4.25 -0.07 -29.57 16 18 C -0.08 -3.54 4.47 87.18 0.39 -3.15 16 19 N -0.16 -8.12 7.03 -49.78 -0.35 -8.47 16 20 N -0.30 -13.24 11.59 -50.61 -0.59 -13.82 16 21 C 0.01 0.32 5.89 88.40 0.52 0.84 16 22 C 0.01 0.25 0.99 -52.93 -0.05 0.19 16 23 C -0.13 -3.01 8.46 71.98 0.61 -2.40 16 24 C -0.15 -2.60 7.56 71.98 0.54 -2.06 16 25 C -0.13 -2.63 8.46 71.98 0.61 -2.02 16 26 S 0.19 6.96 21.30 -56.49 -1.20 5.76 16 27 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.20 8.13 -2.39 -0.02 1.19 16 29 H 0.06 1.22 8.13 -2.38 -0.02 1.20 16 30 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 31 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 32 H 0.07 2.99 7.49 -2.39 -0.02 2.98 16 33 H 0.09 3.79 7.83 -2.39 -0.02 3.77 16 34 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.13 7.96 -2.39 -0.02 1.12 16 39 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.08 7.95 -2.39 -0.02 1.06 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -70.70 371.00 5.66 -65.04 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.91 Total: 9.45 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 6.47 Total: 26.54 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -1.89 Total: -93.23 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -0.27 Total: -59.41 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.65 Total: 45.86 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -1.20 Total: 5.76 kcal Total: -70.70 5.66 -65.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.425 kcal (2) G-P(sol) polarization free energy of solvation -70.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds