Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47144 * 2 1 4 4 C 1.50694 * 109.47120 * 239.99927 * 2 1 3 5 5 O 1.20829 * 120.00047 * 234.26698 * 4 2 1 6 6 O 1.34226 * 120.00107 * 54.27209 * 4 2 1 7 7 C 1.45203 * 116.99886 * 179.97438 * 6 4 2 8 8 C 1.50701 * 109.47026 * 179.97438 * 7 6 4 9 9 O 1.21280 * 119.99908 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00148 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99866 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.46884 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99796 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00011 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00239 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00334 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46923 * 59.99960 * 16 14 12 18 18 H 1.48495 * 109.47656 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47128 * 300.00806 * 16 14 12 20 20 C 1.50707 * 109.46962 * 120.00121 * 2 1 3 21 21 C 1.38237 * 119.98213 * 238.61513 * 20 2 1 22 22 C 1.38190 * 120.04647 * 180.25473 * 21 20 2 23 23 C 1.38499 * 120.02346 * 359.44680 * 22 21 20 24 24 F 1.35100 * 120.01371 * 180.28049 * 23 22 21 25 25 C 1.38396 * 119.97537 * 0.55292 * 23 22 21 26 26 C 1.38439 * 119.94835 * 359.72250 * 25 23 22 27 27 F 1.35108 * 120.01272 * 179.97438 * 26 25 23 28 28 H 1.09003 * 109.47052 * 299.99625 * 1 2 3 29 29 H 1.09000 * 109.46942 * 60.00262 * 1 2 3 30 30 H 1.08998 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47138 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47263 * 300.00104 * 3 2 1 33 33 H 1.09003 * 109.46840 * 60.00245 * 3 2 1 34 34 H 1.08999 * 109.47220 * 299.99803 * 7 6 4 35 35 H 1.08990 * 109.47226 * 59.99955 * 7 6 4 36 36 H 0.96998 * 119.99731 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.47085 * 300.00284 * 11 10 8 38 38 H 1.08990 * 109.47311 * 60.00406 * 11 10 8 39 39 H 0.96991 * 120.00405 * 179.97438 * 15 14 12 40 40 H 1.07993 * 119.97821 * 359.97438 * 21 20 2 41 41 H 1.07998 * 119.98641 * 179.70549 * 22 21 20 42 42 H 1.07994 * 120.02913 * 179.74684 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.8099 -1.6290 -1.1226 6 8 1.6161 -0.3227 -2.4462 7 6 2.1417 -1.0520 -3.5865 8 6 1.5665 -0.4805 -4.8567 9 8 0.7904 0.4501 -4.8060 10 7 1.9154 -1.0028 -6.0492 11 6 1.3566 -0.4468 -7.2841 12 6 1.9020 -1.2038 -8.4676 13 1 2.5952 -2.0178 -8.3150 14 6 1.5153 -0.8578 -9.7449 15 7 0.6708 0.1332 -9.9306 16 14 2.1908 -1.7964 -11.2119 17 1 1.8149 -3.2286 -11.0989 18 1 1.6246 -1.2329 -12.4637 19 1 3.6705 -1.6738 -11.2393 20 6 2.0323 -0.7105 1.2305 21 6 2.8505 -0.0470 2.1257 22 6 3.3161 -0.6988 3.2517 23 6 2.9542 -2.0142 3.4904 24 9 3.4049 -2.6494 4.5943 25 6 2.1351 -2.6794 2.5949 26 6 1.6739 -2.0271 1.4642 27 9 0.8746 -2.6754 0.5889 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.2278 -0.9617 -3.6062 35 1 1.8660 -2.1032 -3.5039 36 1 2.5364 -1.7468 -6.0897 37 1 0.2705 -0.5374 -7.2644 38 1 1.6321 0.6044 -7.3665 39 1 0.3990 0.3769 -10.8292 40 1 3.1297 0.9800 1.9426 41 1 3.9592 -0.1810 3.9480 42 1 1.8556 -3.7063 2.7781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884786373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -189.840435 kcal Electronic energy + Delta-G solvation = -29097.285690 eV Core-core repulsion = 24485.618966 eV Total energy + Delta-G solvation = -4611.666724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.40730 -49.35610 -41.10294 -39.50116 -38.65092 -36.46387 -35.74943 -34.26816 -32.42750 -31.37588 -30.01108 -29.13330 -27.89766 -26.75324 -24.67710 -23.22983 -23.16558 -22.36157 -20.20920 -19.95717 -18.65133 -17.87440 -17.60938 -17.31600 -16.74681 -16.60910 -16.27741 -16.17345 -15.68169 -15.62891 -15.44276 -15.09798 -14.85239 -14.64753 -14.55865 -14.29023 -13.62947 -13.42093 -13.25392 -13.01009 -12.78885 -12.70250 -12.45058 -12.32159 -12.23453 -12.00800 -11.99127 -11.78410 -11.57672 -11.29301 -11.04803 -10.91944 -10.72069 -10.49388 -10.36019 -9.50688 -9.47288 -9.20949 -9.05727 -8.79445 -8.01066 -6.20905 -4.28507 0.45336 0.59007 2.04049 2.30308 2.95972 3.15164 3.23324 3.28306 3.29705 3.44987 3.81179 3.90696 4.00228 4.09619 4.31222 4.36024 4.50876 4.52045 4.63225 4.79967 5.08222 5.15007 5.19491 5.21712 5.26076 5.31518 5.34428 5.36724 5.39911 5.47703 5.51572 5.56282 5.72226 5.82866 5.93078 6.26496 6.32192 7.20265 7.28216 7.43818 7.55304 7.62808 7.90372 8.47655 8.69006 8.93883 9.37857 10.89129 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.001982 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.489052 B =14126.670623 C =14554.624284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.006 4.006 3 C -0.148 4.148 4 C 0.470 3.530 5 O -0.501 6.501 6 O -0.321 6.321 7 C 0.048 3.952 8 C 0.500 3.500 9 O -0.534 6.534 10 N -0.706 5.706 11 C 0.252 3.748 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.115 4.115 21 C -0.053 4.053 22 C -0.165 4.165 23 C 0.132 3.868 24 F -0.132 7.132 25 C -0.193 4.193 26 C 0.159 3.841 27 F -0.123 7.123 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.267 0.733 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 -0.939 28.426 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.007 4.007 3 C -0.204 4.204 4 C 0.311 3.689 5 O -0.389 6.389 6 O -0.236 6.236 7 C -0.030 4.030 8 C 0.283 3.717 9 O -0.411 6.411 10 N -0.357 5.357 11 C 0.132 3.868 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.733 3.267 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.116 4.116 21 C -0.070 4.070 22 C -0.184 4.184 23 C 0.112 3.888 24 F -0.110 7.110 25 C -0.213 4.213 26 C 0.140 3.860 27 F -0.101 7.101 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.569 -0.480 28.272 28.500 hybrid contribution 0.747 -1.417 -0.913 1.844 sum 4.316 -1.898 27.359 27.762 Atomic orbital electron populations 1.22036 0.90092 1.04187 1.04456 1.19243 0.98635 0.96248 0.86606 1.22016 1.01828 0.91876 1.04728 1.23395 0.78632 0.81863 0.84983 1.90678 1.32783 1.28235 1.87174 1.86534 1.65346 1.57678 1.14012 1.22898 0.99850 0.96727 0.83519 1.19859 0.82948 0.84401 0.84466 1.90704 1.35076 1.28336 1.87005 1.46371 1.46973 1.35898 1.06419 1.19171 0.94678 0.94781 0.78208 1.21169 1.28602 1.17905 0.90770 0.91823 1.24951 0.94808 0.95130 0.99090 1.69957 1.31980 1.27537 1.22698 0.86444 0.79204 0.79908 0.81179 1.20027 1.21039 1.20034 1.19501 1.01579 0.93048 0.97521 1.20908 0.93639 1.00650 0.91846 1.21178 1.03672 0.93413 1.00094 1.17324 0.96170 0.91081 0.84186 1.91538 1.87190 1.81982 1.50296 1.21002 1.02678 1.02461 0.95133 1.17053 0.91567 0.89823 0.87586 1.91531 1.70200 1.81061 1.67291 0.90666 0.89547 0.91174 0.91372 0.89681 0.90165 0.88526 0.88514 0.77428 0.95248 0.95242 0.92302 0.83133 0.83730 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.13 37.16 0.30 -1.10 16 2 C -0.01 -0.06 0.71 -156.81 -0.11 -0.17 16 3 C -0.15 -1.10 7.11 37.16 0.26 -0.84 16 4 C 0.47 6.39 5.92 36.00 0.21 6.61 16 5 O -0.50 -7.72 14.77 -18.75 -0.28 -8.00 16 6 O -0.32 -4.96 9.48 -45.89 -0.43 -5.40 16 7 C 0.05 0.72 5.94 36.01 0.21 0.94 16 8 C 0.50 9.91 7.91 -10.99 -0.09 9.82 16 9 O -0.53 -12.78 16.50 -14.10 -0.23 -13.01 16 10 N -0.71 -14.50 5.55 -61.47 -0.34 -14.84 16 11 C 0.25 6.53 5.43 -5.19 -0.03 6.51 16 12 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 13 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.88 -25.68 13.29 55.43 0.74 -24.95 16 16 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 C -0.12 -1.09 4.31 -104.54 -0.45 -1.54 16 21 C -0.05 -0.37 8.97 -39.60 -0.36 -0.72 16 22 C -0.16 -1.12 10.03 -39.50 -0.40 -1.51 16 23 C 0.13 1.11 7.30 -39.43 -0.29 0.82 16 24 F -0.13 -1.16 17.27 2.25 0.04 -1.12 16 25 C -0.19 -1.76 10.01 -39.45 -0.39 -2.15 16 26 C 0.16 1.68 6.21 -39.43 -0.24 1.44 16 27 F -0.12 -1.50 14.01 2.25 0.03 -1.46 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.87 8.01 -51.93 -0.42 0.46 16 30 H 0.07 0.71 6.20 -51.93 -0.32 0.39 16 31 H 0.07 0.47 7.44 -51.93 -0.39 0.08 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.39 7.58 -51.93 -0.39 -0.01 16 34 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 36 H 0.39 6.80 8.32 -40.82 -0.34 6.46 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.15 0.66 5.89 -52.49 -0.31 0.35 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -33.70 368.73 -6.80 -40.50 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.08 Total: 2.27 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.78 Total: 4.87 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.40 Total: -39.79 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.94 Total: -26.41 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.07 Total: -2.58 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.70 -6.80 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884786373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.341 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds