Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47144 * 2 1 4 4 C 1.50694 * 109.47120 * 239.99927 * 2 1 3 5 5 O 1.20829 * 120.00047 * 234.26698 * 4 2 1 6 6 O 1.34226 * 120.00107 * 54.27209 * 4 2 1 7 7 C 1.45203 * 116.99886 * 179.97438 * 6 4 2 8 8 C 1.50701 * 109.47026 * 179.97438 * 7 6 4 9 9 O 1.21280 * 119.99908 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00148 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99866 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.46884 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99796 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00011 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00239 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00334 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46923 * 59.99960 * 16 14 12 18 18 H 1.48495 * 109.47656 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47128 * 300.00806 * 16 14 12 20 20 C 1.50707 * 109.46962 * 120.00121 * 2 1 3 21 21 C 1.38237 * 119.98213 * 238.61513 * 20 2 1 22 22 C 1.38190 * 120.04647 * 180.25473 * 21 20 2 23 23 C 1.38499 * 120.02346 * 359.44680 * 22 21 20 24 24 F 1.35100 * 120.01371 * 180.28049 * 23 22 21 25 25 C 1.38396 * 119.97537 * 0.55292 * 23 22 21 26 26 C 1.38439 * 119.94835 * 359.72250 * 25 23 22 27 27 F 1.35108 * 120.01272 * 179.97438 * 26 25 23 28 28 H 1.09003 * 109.47052 * 299.99625 * 1 2 3 29 29 H 1.09000 * 109.46942 * 60.00262 * 1 2 3 30 30 H 1.08998 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47138 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47263 * 300.00104 * 3 2 1 33 33 H 1.09003 * 109.46840 * 60.00245 * 3 2 1 34 34 H 1.08999 * 109.47220 * 299.99803 * 7 6 4 35 35 H 1.08990 * 109.47226 * 59.99955 * 7 6 4 36 36 H 0.96998 * 119.99731 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.47085 * 300.00284 * 11 10 8 38 38 H 1.08990 * 109.47311 * 60.00406 * 11 10 8 39 39 H 0.96991 * 120.00405 * 179.97438 * 15 14 12 40 40 H 1.07993 * 119.97821 * 359.97438 * 21 20 2 41 41 H 1.07998 * 119.98641 * 179.70549 * 22 21 20 42 42 H 1.07994 * 120.02913 * 179.74684 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.8099 -1.6290 -1.1226 6 8 1.6161 -0.3227 -2.4462 7 6 2.1417 -1.0520 -3.5865 8 6 1.5665 -0.4805 -4.8567 9 8 0.7904 0.4501 -4.8060 10 7 1.9154 -1.0028 -6.0492 11 6 1.3566 -0.4468 -7.2841 12 6 1.9020 -1.2038 -8.4676 13 1 2.5952 -2.0178 -8.3150 14 6 1.5153 -0.8578 -9.7449 15 7 0.6708 0.1332 -9.9306 16 14 2.1908 -1.7964 -11.2119 17 1 1.8149 -3.2286 -11.0989 18 1 1.6246 -1.2329 -12.4637 19 1 3.6705 -1.6738 -11.2393 20 6 2.0323 -0.7105 1.2305 21 6 2.8505 -0.0470 2.1257 22 6 3.3161 -0.6988 3.2517 23 6 2.9542 -2.0142 3.4904 24 9 3.4049 -2.6494 4.5943 25 6 2.1351 -2.6794 2.5949 26 6 1.6739 -2.0271 1.4642 27 9 0.8746 -2.6754 0.5889 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.2278 -0.9617 -3.6062 35 1 1.8660 -2.1032 -3.5039 36 1 2.5364 -1.7468 -6.0897 37 1 0.2705 -0.5374 -7.2644 38 1 1.6321 0.6044 -7.3665 39 1 0.3990 0.3769 -10.8292 40 1 3.1297 0.9800 1.9426 41 1 3.9592 -0.1810 3.9480 42 1 1.8556 -3.7063 2.7781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884786373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -210.217825 kcal Electronic energy + Delta-G solvation = -29098.169320 eV Core-core repulsion = 24485.618966 eV Total energy + Delta-G solvation = -4612.550354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.16163 -50.04860 -42.12430 -40.64618 -39.92496 -37.62297 -36.52876 -36.19304 -34.42587 -31.98969 -31.01421 -30.37467 -28.56431 -28.51433 -25.56967 -24.65965 -23.86134 -23.63948 -21.67219 -21.11680 -19.40728 -19.19542 -18.69391 -18.28017 -18.00342 -17.76577 -17.27612 -17.05322 -16.92670 -16.82988 -16.39387 -16.35709 -16.21289 -15.92260 -15.35068 -15.25808 -14.81432 -14.67506 -14.23612 -14.15168 -13.96076 -13.80475 -13.69949 -13.47064 -13.22746 -13.04077 -12.96867 -12.94083 -12.69136 -12.59849 -12.25409 -12.23589 -11.99247 -11.93412 -11.54224 -11.49367 -10.92717 -10.81376 -10.12683 -9.94552 -9.72497 -8.30037 -6.46754 -0.20538 -0.02186 0.99825 1.20777 1.44109 1.47208 1.52965 1.55711 2.24450 2.36304 2.57156 2.80594 3.04920 3.09798 3.35735 3.47009 3.57084 3.71991 3.76559 3.83390 3.95281 4.00389 4.01004 4.18906 4.57278 4.68145 4.71568 4.76279 4.77549 4.84295 4.87945 4.98939 5.05300 5.10573 5.17214 5.21150 5.22735 5.28232 5.40302 5.61534 5.69760 5.81248 6.49604 6.61597 6.76176 7.19005 7.33675 8.81715 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.001982 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.489052 B =14126.670623 C =14554.624284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.004 4.004 3 C -0.147 4.147 4 C 0.467 3.533 5 O -0.521 6.521 6 O -0.338 6.338 7 C 0.058 3.942 8 C 0.502 3.498 9 O -0.580 6.580 10 N -0.699 5.699 11 C 0.267 3.733 12 C -0.559 4.559 13 H 0.085 0.915 14 C 0.005 3.995 15 N -0.929 5.929 16 Si 0.985 3.015 17 H -0.263 1.263 18 H -0.286 1.286 19 H -0.262 1.262 20 C -0.124 4.124 21 C -0.044 4.044 22 C -0.152 4.152 23 C 0.123 3.877 24 F -0.135 7.135 25 C -0.201 4.201 26 C 0.132 3.868 27 F -0.141 7.141 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.412 0.588 37 H -0.008 1.008 38 H -0.006 1.006 39 H 0.269 0.731 40 H 0.183 0.817 41 H 0.175 0.825 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -1.190 29.894 30.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.006 4.006 3 C -0.203 4.203 4 C 0.310 3.690 5 O -0.410 6.410 6 O -0.253 6.253 7 C -0.019 4.019 8 C 0.287 3.713 9 O -0.460 6.460 10 N -0.351 5.351 11 C 0.145 3.855 12 C -0.596 4.596 13 H 0.103 0.897 14 C -0.195 4.195 15 N -0.567 5.567 16 Si 0.808 3.192 17 H -0.188 1.188 18 H -0.211 1.211 19 H -0.187 1.187 20 C -0.126 4.126 21 C -0.062 4.062 22 C -0.171 4.171 23 C 0.104 3.896 24 F -0.114 7.114 25 C -0.221 4.221 26 C 0.112 3.888 27 F -0.119 7.119 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.248 0.752 37 H 0.010 0.990 38 H 0.012 0.988 39 H 0.078 0.922 40 H 0.201 0.799 41 H 0.193 0.807 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.621 -0.767 29.778 30.314 hybrid contribution 0.107 -1.321 -1.257 1.827 sum 5.729 -2.088 28.521 29.165 Atomic orbital electron populations 1.22032 0.89938 1.03477 1.05118 1.19393 0.98785 0.97404 0.84974 1.22096 1.02497 0.89989 1.05766 1.24216 0.78067 0.81676 0.84996 1.90660 1.33868 1.29167 1.87264 1.86545 1.65916 1.58124 1.14741 1.22736 1.00771 0.96997 0.81352 1.20598 0.81785 0.83355 0.85550 1.90681 1.37091 1.30449 1.87785 1.46056 1.47236 1.36415 1.05379 1.18626 0.92715 0.93338 0.80814 1.21574 1.28781 1.18297 0.90980 0.89702 1.26045 0.94883 0.95965 1.02620 1.70118 1.33567 1.29453 1.23560 0.85207 0.78864 0.78565 0.76585 1.18781 1.21104 1.18665 1.19609 1.02430 0.92753 0.97768 1.21271 0.92121 1.01855 0.90907 1.21541 1.02833 0.92544 1.00156 1.17505 0.96295 0.91849 0.83988 1.91531 1.87214 1.82223 1.50423 1.21101 1.02955 1.02906 0.95092 1.17362 0.92613 0.90686 0.88121 1.91480 1.70923 1.81535 1.67997 0.87940 0.90865 0.92605 0.90360 0.91063 0.86778 0.85854 0.86514 0.75212 0.98972 0.98793 0.92175 0.79948 0.80709 0.82868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.13 71.98 0.59 -2.09 16 2 C 0.00 -0.08 0.71 -53.67 -0.04 -0.12 16 3 C -0.15 -1.82 7.11 71.98 0.51 -1.31 16 4 C 0.47 12.40 5.92 71.23 0.42 12.83 16 5 O -0.52 -15.63 14.77 21.95 0.32 -15.31 16 6 O -0.34 -10.39 9.48 -45.02 -0.43 -10.82 16 7 C 0.06 1.73 5.94 71.24 0.42 2.15 16 8 C 0.50 20.15 7.91 87.66 0.69 20.85 16 9 O -0.58 -28.86 16.50 15.77 0.26 -28.60 16 10 N -0.70 -29.02 5.55 -466.79 -2.59 -31.61 16 11 C 0.27 14.41 5.43 85.63 0.46 14.88 16 12 C -0.56 -29.88 9.28 25.60 0.24 -29.64 16 13 H 0.08 4.08 7.60 -2.91 -0.02 4.05 16 14 C 0.00 0.26 5.46 84.65 0.46 0.73 16 15 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 16 Si 0.98 41.83 29.54 68.60 2.03 43.86 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 18 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 C -0.12 -2.13 4.31 -19.81 -0.09 -2.22 16 21 C -0.04 -0.46 8.97 22.26 0.20 -0.26 16 22 C -0.15 -1.56 10.03 22.32 0.22 -1.33 16 23 C 0.12 1.84 7.30 22.37 0.16 2.00 16 24 F -0.14 -2.16 17.27 44.97 0.78 -1.39 16 25 C -0.20 -3.54 10.01 22.36 0.22 -3.32 16 26 C 0.13 2.72 6.21 22.37 0.14 2.86 16 27 F -0.14 -3.54 14.01 44.97 0.63 -2.91 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.50 8.01 -2.39 -0.02 1.48 16 30 H 0.05 1.16 6.20 -2.39 -0.01 1.14 16 31 H 0.08 0.82 7.44 -2.39 -0.02 0.80 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 0.63 7.58 -2.39 -0.02 0.62 16 34 H 0.12 3.04 8.13 -2.39 -0.02 3.02 16 35 H 0.12 3.03 8.13 -2.39 -0.02 3.01 16 36 H 0.41 13.86 8.32 -92.71 -0.77 13.09 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.48 16 38 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.18 0.70 5.89 -2.91 -0.02 0.68 16 41 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -76.45 368.73 6.22 -70.23 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.31 Total: 15.53 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 4.63 Total: 16.00 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -2.30 Total: -86.60 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: 0.16 Total: -54.72 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 1.41 Total: -4.29 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -76.45 6.22 -70.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884786373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.988 kcal (2) G-P(sol) polarization free energy of solvation -76.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds