Wall clock time and date at job start Sat Apr 11 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36891 * 119.99821 * 2 1 4 4 H 1.08004 * 120.00270 * 160.79972 * 3 2 1 5 5 C 1.39008 * 120.00381 * 340.79556 * 3 2 1 6 6 N 1.31402 * 119.99534 * 341.88258 * 5 3 2 7 7 Si 1.86798 * 120.00472 * 161.87636 * 5 3 2 8 8 H 1.48503 * 109.46896 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47030 * 120.00303 * 7 5 3 10 10 H 1.48495 * 109.47413 * 240.00072 * 7 5 3 11 11 C 1.34767 * 120.00395 * 180.02562 * 2 1 3 12 12 O 1.21729 * 120.00517 * 185.37453 * 11 2 1 13 13 C 1.46561 * 120.00029 * 5.37402 * 11 2 1 14 14 C 1.36778 * 126.18404 * 187.16025 * 13 11 2 15 15 N 1.30939 * 113.92320 * 180.02562 * 14 13 11 16 16 C 1.29373 * 117.46651 * 0.02562 * 15 14 13 17 17 C 1.50700 * 124.70031 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47366 * 90.02120 * 17 16 15 19 19 C 1.34776 * 120.00249 * 179.97438 * 18 17 16 20 20 O 1.21516 * 119.99997 * 0.02562 * 19 18 17 21 21 O 1.34636 * 120.00259 * 179.97438 * 19 18 17 22 22 C 1.45206 * 117.00092 * 180.02562 * 21 19 18 23 23 C 1.52991 * 109.47248 * 59.99936 * 22 21 19 24 24 C 1.53002 * 109.46882 * 180.02562 * 22 21 19 25 25 C 1.53001 * 109.46748 * 299.99952 * 22 21 19 26 26 S 1.70923 * 110.59774 * 359.97438 * 16 15 14 27 27 H 1.09003 * 109.47369 * 216.08474 * 1 2 3 28 28 H 1.09000 * 109.47443 * 336.08084 * 1 2 3 29 29 H 1.09005 * 109.47579 * 96.08446 * 1 2 3 30 30 H 0.97001 * 119.99726 * 179.97438 * 6 5 3 31 31 H 1.08002 * 123.03993 * 0.27079 * 14 13 11 32 32 H 1.09001 * 109.47477 * 210.02002 * 17 16 15 33 33 H 1.08999 * 109.47343 * 330.02060 * 17 16 15 34 34 H 0.96996 * 120.00281 * 359.97438 * 18 17 16 35 35 H 1.09006 * 109.47133 * 60.00363 * 23 22 21 36 36 H 1.08998 * 109.47571 * 179.97438 * 23 22 21 37 37 H 1.08996 * 109.47576 * 300.00207 * 23 22 21 38 38 H 1.08996 * 109.47140 * 60.00149 * 24 22 21 39 39 H 1.08998 * 109.46634 * 179.97438 * 24 22 21 40 40 H 1.08997 * 109.47405 * 299.99751 * 24 22 21 41 41 H 1.08997 * 109.47403 * 60.00279 * 25 22 21 42 42 H 1.09004 * 109.46908 * 180.02562 * 25 22 21 43 43 H 1.09000 * 109.47487 * 299.99552 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1493 1.1855 0.0000 4 1 3.1843 1.2116 0.3076 5 6 1.5124 2.3559 -0.3960 6 7 0.4015 2.2950 -1.0952 7 14 2.2354 4.0152 0.0660 8 1 3.4811 3.8118 0.8484 9 1 2.5458 4.7807 -1.1680 10 1 1.2543 4.7721 0.8843 11 6 2.1388 -1.1671 -0.0005 12 8 3.3521 -1.1695 0.0982 13 6 1.4110 -2.4335 -0.1200 14 6 1.9453 -3.6867 0.0023 15 7 1.0744 -4.6525 -0.1499 16 6 -0.1518 -4.3177 -0.3911 17 6 -1.2832 -5.2923 -0.5938 18 7 -1.9113 -5.5867 0.6965 19 6 -2.9530 -6.4394 0.7600 20 8 -3.3711 -6.9645 -0.2530 21 8 -3.5299 -6.7104 1.9459 22 6 -4.6467 -7.6384 1.9391 23 6 -4.1842 -8.9890 1.3888 24 6 -5.1677 -7.8199 3.3661 25 6 -5.7654 -7.0835 1.0549 26 16 -0.3106 -2.6168 -0.4481 27 1 -0.3634 -0.8305 0.6053 28 1 -0.3634 0.9394 0.4167 29 1 -0.3634 -0.1089 -1.0219 30 1 -0.0432 3.1117 -1.3712 31 1 2.9904 -3.8635 0.2097 32 1 -2.0220 -4.8566 -1.2665 33 1 -0.8955 -6.2139 -1.0279 34 1 -1.5774 -5.1680 1.5052 35 1 -3.3872 -9.3843 2.0187 36 1 -5.0224 -9.6857 1.3840 37 1 -3.8133 -8.8594 0.3721 38 1 -5.4974 -6.8576 3.7577 39 1 -6.0063 -8.5162 3.3609 40 1 -4.3710 -8.2150 3.9964 41 1 -5.3945 -6.9539 0.0382 42 1 -6.6039 -7.7799 1.0501 43 1 -6.0950 -6.1214 1.4470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931242263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:15 Heat of formation + Delta-G solvation = -58.361526 kcal Electronic energy + Delta-G solvation = -26867.451473 eV Core-core repulsion = 22847.619239 eV Total energy + Delta-G solvation = -4019.832233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.91022 -39.47024 -38.41804 -37.54330 -35.12113 -34.92650 -34.13100 -32.10066 -30.51893 -27.95386 -27.67155 -27.61732 -26.72741 -25.03931 -23.81810 -22.29534 -21.21463 -20.33430 -18.84139 -18.20991 -17.84279 -17.21828 -16.81638 -16.38898 -15.83407 -15.58179 -15.23129 -14.87198 -14.68896 -14.51202 -14.48148 -14.03137 -13.71640 -13.53183 -13.28813 -12.97248 -12.75550 -12.61611 -12.38538 -12.14951 -12.14580 -12.10957 -11.92108 -11.68680 -11.64266 -11.55126 -11.20702 -10.99551 -10.67219 -10.58044 -10.50552 -10.25338 -9.53458 -9.39693 -9.14459 -8.93053 -8.76283 -8.58318 -8.03598 -6.73370 -4.10916 0.53851 1.59882 2.00033 2.07556 2.70257 2.90997 3.05972 3.09103 3.16148 3.85336 3.99613 4.05936 4.17353 4.45755 4.50430 4.56097 4.64499 4.82679 5.02058 5.20000 5.27625 5.33600 5.42408 5.43513 5.50387 5.55442 5.58044 5.60555 5.72015 5.80323 5.88767 5.93760 6.04515 6.17514 6.34527 6.41366 6.53597 6.79592 7.22369 7.25096 7.73662 8.00608 8.12149 8.21989 8.82684 9.00154 9.62618 10.29704 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.002278 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.012468 B =12289.890339 C =13008.447691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.418 5.418 3 C -0.293 4.293 4 H 0.112 0.888 5 C 0.030 3.970 6 N -0.858 5.858 7 Si 0.933 3.067 8 H -0.263 1.263 9 H -0.277 1.277 10 H -0.276 1.276 11 C 0.493 3.507 12 O -0.579 6.579 13 C -0.223 4.223 14 C 0.060 3.940 15 N -0.449 5.449 16 C -0.064 4.064 17 C 0.228 3.772 18 N -0.704 5.704 19 C 0.654 3.346 20 O -0.569 6.569 21 O -0.364 6.364 22 C 0.136 3.864 23 C -0.184 4.184 24 C -0.141 4.141 25 C -0.184 4.184 26 S 0.210 5.790 27 H 0.039 0.961 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.276 0.724 31 H 0.182 0.818 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.409 0.591 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.547 -14.061 5.144 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.133 5.133 3 C -0.422 4.422 4 H 0.130 0.870 5 C -0.176 4.176 6 N -0.495 5.495 7 Si 0.758 3.242 8 H -0.187 1.187 9 H -0.203 1.203 10 H -0.202 1.202 11 C 0.282 3.718 12 O -0.466 6.466 13 C -0.348 4.348 14 C -0.098 4.098 15 N -0.164 5.164 16 C -0.337 4.337 17 C 0.103 3.897 18 N -0.364 5.364 19 C 0.407 3.593 20 O -0.459 6.459 21 O -0.279 6.279 22 C 0.099 3.901 23 C -0.241 4.241 24 C -0.198 4.198 25 C -0.241 4.241 26 S 0.466 5.534 27 H 0.056 0.944 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.199 0.801 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.244 0.756 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.164 -14.142 4.466 20.508 hybrid contribution 1.161 0.792 0.545 1.507 sum -13.003 -13.350 5.011 19.298 Atomic orbital electron populations 1.21867 0.81270 1.01171 1.01427 1.43647 1.05602 1.05165 1.58920 1.19954 0.98387 0.82608 1.41242 0.87033 1.25499 0.96532 1.00715 0.94867 1.70017 1.18293 1.30120 1.31039 0.85746 0.79444 0.80213 0.78774 1.18713 1.20308 1.20151 1.16528 0.86796 0.81471 0.87012 1.90682 1.12534 1.85781 1.57604 1.26675 0.95877 1.00623 1.11661 1.22151 1.00489 0.85143 1.02001 1.66012 1.00484 1.37011 1.12927 1.27154 0.96036 0.99895 1.10570 1.19513 0.89653 0.96990 0.83564 1.44772 1.32716 1.47301 1.11640 1.17975 0.79969 0.79166 0.82214 1.90902 1.65298 1.54414 1.35247 1.86316 1.47270 1.62178 1.32116 1.22074 0.83372 0.87590 0.97040 1.22518 1.02159 0.95359 1.04050 1.21863 1.01405 1.02986 0.93571 1.22523 0.97784 1.01416 1.02379 1.84527 1.06497 0.99695 1.62689 0.94368 0.88215 0.91583 0.91360 0.80097 0.89210 0.88757 0.75619 0.92159 0.91194 0.89286 0.91411 0.90166 0.91453 0.89280 0.91193 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.82 7.19 59.84 0.43 2.25 16 2 N -0.42 -10.20 3.01 -123.73 -0.37 -10.58 16 3 C -0.29 -7.60 9.34 -15.01 -0.14 -7.74 16 4 H 0.11 3.03 7.35 -52.48 -0.39 2.65 16 5 C 0.03 0.73 4.94 -17.45 -0.09 0.64 16 6 N -0.86 -20.70 10.84 55.50 0.60 -20.09 16 7 Si 0.93 18.88 29.59 -169.99 -5.03 13.85 16 8 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 9 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 10 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 11 C 0.49 11.98 7.58 -12.91 -0.10 11.88 16 12 O -0.58 -15.89 16.53 5.16 0.09 -15.81 16 13 C -0.22 -4.43 6.24 -36.76 -0.23 -4.65 16 14 C 0.06 1.11 11.17 -18.46 -0.21 0.90 16 15 N -0.45 -7.56 10.50 -11.25 -0.12 -7.68 16 16 C -0.06 -0.94 6.74 -13.31 -0.09 -1.03 16 17 C 0.23 2.80 6.24 -5.20 -0.03 2.77 16 18 N -0.70 -8.32 5.55 -66.47 -0.37 -8.69 16 19 C 0.65 8.28 8.06 54.05 0.44 8.72 16 20 O -0.57 -8.10 11.88 -19.28 -0.23 -8.33 16 21 O -0.36 -4.20 9.94 -40.31 -0.40 -4.61 16 22 C 0.14 1.27 1.13 -90.62 -0.10 1.17 16 23 C -0.18 -1.66 8.37 37.15 0.31 -1.35 16 24 C -0.14 -0.96 8.85 37.16 0.33 -0.63 16 25 C -0.18 -1.65 8.37 37.16 0.31 -1.34 16 26 S 0.21 3.27 18.10 -107.50 -1.95 1.32 16 27 H 0.04 0.69 5.12 -28.14 -0.14 0.54 16 28 H 0.10 2.14 6.44 -51.93 -0.33 1.80 16 29 H 0.07 1.36 7.40 -51.93 -0.38 0.98 16 30 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 31 H 0.18 3.23 8.06 -52.49 -0.42 2.80 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.41 4.49 8.57 -40.82 -0.35 4.14 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 1.00 5.88 -51.93 -0.31 0.69 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -29.82 367.80 -6.98 -36.80 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.57 Total: 6.68 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 0.83 Total: 11.59 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.26 Total: -47.04 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.54 Total: -28.75 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.95 Total: 1.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.82 -6.98 -36.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931242263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.563 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds