Wall clock time and date at job start Sat Apr 11 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 117.00241 * 2 1 4 4 O 1.20827 * 119.99352 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00187 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47213 * 154.99934 * 5 3 2 7 7 C 1.52993 * 109.47201 * 275.00141 * 5 3 2 8 8 C 1.50698 * 109.47393 * 300.00157 * 7 5 3 9 9 C 1.38238 * 119.98734 * 269.73093 * 8 7 5 10 10 C 1.38217 * 120.01815 * 179.72556 * 9 8 7 11 11 C 1.38360 * 119.98062 * 0.54026 * 10 9 8 12 12 Cl 1.73602 * 120.01094 * 179.70880 * 11 10 9 13 13 C 1.38352 * 119.97158 * 359.72736 * 11 10 9 14 14 C 1.38207 * 119.99070 * 0.02562 * 13 11 10 15 15 N 1.46905 * 109.47125 * 35.00090 * 5 3 2 16 16 C 1.46901 * 110.99870 * 60.00196 * 15 5 3 17 17 C 1.53004 * 109.46916 * 180.02562 * 16 15 5 18 18 H 1.08996 * 109.46939 * 60.00272 * 17 16 15 19 19 O 1.42891 * 109.46947 * 299.99729 * 17 16 15 20 20 C 1.50703 * 109.46807 * 179.97438 * 17 16 15 21 21 H 1.07995 * 120.00107 * 359.97438 * 20 17 16 22 22 C 1.37878 * 119.99714 * 179.97438 * 20 17 16 23 23 N 1.31509 * 119.99834 * 179.97438 * 22 20 17 24 24 Si 1.86799 * 120.00034 * 0.02562 * 22 20 17 25 25 H 1.48500 * 109.47154 * 89.99933 * 24 22 20 26 26 H 1.48501 * 109.47128 * 209.99734 * 24 22 20 27 27 H 1.48501 * 109.47273 * 329.99905 * 24 22 20 28 28 H 1.08998 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46567 * 299.99809 * 1 2 3 30 30 H 1.09006 * 109.47465 * 59.99518 * 1 2 3 31 31 H 1.08996 * 109.47352 * 300.00278 * 6 5 3 32 32 H 1.09012 * 109.46801 * 60.00052 * 6 5 3 33 33 H 1.08998 * 109.47171 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.47393 * 59.99721 * 7 5 3 35 35 H 1.08998 * 109.47408 * 180.02562 * 7 5 3 36 36 H 1.08003 * 119.99355 * 359.97438 * 9 8 7 37 37 H 1.07991 * 120.01125 * 180.27077 * 10 9 8 38 38 H 1.08007 * 120.00278 * 179.97438 * 13 11 10 39 39 H 1.07999 * 119.99411 * 179.97438 * 14 13 11 40 40 H 1.00901 * 110.99869 * 296.04907 * 15 5 3 41 41 H 1.09004 * 109.47031 * 299.99620 * 16 15 5 42 42 H 1.08995 * 109.47111 * 59.99900 * 16 15 5 43 43 H 0.96703 * 114.00376 * 300.00063 * 19 17 16 44 44 H 0.96997 * 120.00332 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0070 2.6072 -0.6101 7 6 4.0828 1.1757 1.4361 8 6 3.5206 2.3114 2.2516 9 6 4.2089 3.5072 2.3377 10 6 3.6911 4.5512 3.0808 11 6 2.4890 4.3955 3.7478 12 17 1.8416 5.7037 4.6876 13 6 1.8033 3.1966 3.6658 14 6 2.3196 2.1552 2.9182 15 7 4.1144 0.1677 -0.7955 16 6 3.6389 0.2307 -2.1840 17 6 4.2290 -0.9361 -2.9785 18 1 3.9141 -1.8778 -2.5291 19 8 5.6554 -0.8524 -2.9593 20 6 3.7407 -0.8718 -4.4028 21 1 3.0757 -0.0784 -4.7104 22 6 4.1430 -1.8259 -5.3132 23 7 3.7165 -1.7701 -6.5560 24 14 5.2927 -3.1987 -4.7810 25 1 4.4942 -4.3538 -4.2981 26 1 6.1266 -3.6212 -5.9349 27 1 6.1714 -2.7123 -3.6871 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.6391 2.6779 -1.6337 32 1 3.6003 3.4288 -0.0203 33 1 5.0955 2.6645 -0.6101 34 1 3.7689 0.2265 1.8704 35 1 5.1713 1.2332 1.4358 36 1 5.1497 3.6270 1.8208 37 1 4.2268 5.4867 3.1444 38 1 0.8650 3.0744 4.1866 39 1 1.7846 1.2192 2.8545 40 1 3.8914 -0.7229 -0.3769 41 1 2.5509 0.1664 -2.1987 42 1 3.9534 1.1726 -2.6333 43 1 6.0069 -0.0381 -3.3446 44 1 3.9998 -2.4411 -7.1966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931506303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:22 Heat of formation + Delta-G solvation = -112.788943 kcal Electronic energy + Delta-G solvation = -28305.468221 eV Core-core repulsion = 24248.939380 eV Total energy + Delta-G solvation = -4056.528841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04601 -39.51639 -37.53885 -36.74529 -36.43412 -35.55730 -32.76787 -32.24587 -31.37276 -29.99531 -28.15485 -27.74291 -27.01653 -24.47946 -23.47040 -22.86845 -21.76866 -20.51913 -19.69795 -17.80009 -17.24690 -17.08473 -16.87604 -16.46887 -15.85264 -15.57994 -15.30302 -14.81079 -14.35940 -14.23448 -13.95379 -13.93318 -13.75839 -13.50181 -13.40008 -13.12472 -12.74231 -12.55466 -12.21984 -12.12850 -12.01465 -11.86170 -11.73353 -11.60408 -11.46846 -11.34959 -11.10391 -11.02806 -10.88564 -10.75843 -10.41882 -10.35927 -9.92996 -9.26784 -9.06487 -8.80421 -8.63617 -8.34654 -8.14513 -6.14344 -4.26271 0.85957 1.04718 1.87684 2.25038 2.70277 3.33596 3.38535 3.48362 3.75219 4.16114 4.44125 4.52680 4.60261 4.62762 4.70248 4.76919 4.95089 5.04230 5.08687 5.11455 5.17567 5.20734 5.39267 5.46391 5.50373 5.67159 5.68752 5.75993 5.83279 5.89339 5.91939 5.95979 5.96649 6.11195 6.18547 6.28225 6.43348 6.53706 6.59301 7.07414 7.27223 7.51893 7.64778 7.79875 8.27384 8.81676 9.07505 9.49983 10.96224 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023289 B = 0.002668 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.990223 B =10492.685658 C =10962.398723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.433 3.567 4 O -0.502 6.502 5 C 0.136 3.864 6 C -0.136 4.136 7 C -0.070 4.070 8 C -0.075 4.075 9 C -0.094 4.094 10 C -0.110 4.110 11 C -0.036 4.036 12 Cl -0.077 7.077 13 C -0.106 4.106 14 C -0.097 4.097 15 N -0.656 5.656 16 C 0.037 3.963 17 C 0.203 3.797 18 H 0.053 0.947 19 O -0.571 6.571 20 C -0.566 4.566 21 H 0.070 0.930 22 C 0.083 3.917 23 N -0.893 5.893 24 Si 0.872 3.128 25 H -0.288 1.288 26 H -0.296 1.296 27 H -0.214 1.214 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.348 0.652 41 H 0.031 0.969 42 H 0.073 0.927 43 H 0.355 0.645 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 9.520 22.154 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.273 3.727 4 O -0.387 6.387 5 C 0.042 3.958 6 C -0.193 4.193 7 C -0.108 4.108 8 C -0.076 4.076 9 C -0.113 4.113 10 C -0.128 4.128 11 C -0.062 4.062 12 Cl -0.048 7.048 13 C -0.124 4.124 14 C -0.115 4.115 15 N -0.288 5.288 16 C -0.091 4.091 17 C 0.145 3.855 18 H 0.071 0.929 19 O -0.376 6.376 20 C -0.603 4.603 21 H 0.088 0.912 22 C -0.121 4.121 23 N -0.530 5.530 24 Si 0.699 3.301 25 H -0.215 1.215 26 H -0.223 1.223 27 H -0.137 1.137 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.168 0.832 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.201 0.799 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.564 9.598 22.216 24.251 hybrid contribution -1.111 -0.313 -0.177 1.168 sum -2.675 9.285 22.039 24.064 Atomic orbital electron populations 1.23228 0.76728 1.03645 1.02217 1.86541 1.23245 1.33787 1.83913 1.25426 0.93695 0.81492 0.72051 1.90633 1.67253 1.36344 1.44481 1.21104 0.82920 0.96466 0.95274 1.21909 1.02465 0.93373 1.01546 1.20680 1.02641 0.96705 0.90727 1.19886 0.94915 0.95582 0.97197 1.21055 1.00258 0.91940 0.98010 1.21037 0.94566 0.99948 0.97267 1.20910 0.96300 0.90071 0.98953 1.98365 1.86258 1.48503 1.71689 1.20956 0.99991 0.91683 0.99791 1.20950 0.95337 0.98692 0.96538 1.60683 1.60467 1.04565 1.03042 1.22848 0.97367 1.02387 0.86514 1.19658 0.79119 0.92597 0.94159 0.92940 1.86659 1.22715 1.43498 1.84711 1.21463 1.31614 1.13947 0.93325 0.91191 1.24994 0.95066 0.97658 0.94396 1.69956 1.44082 1.35394 1.03566 0.87009 0.82349 0.80722 0.80057 1.21524 1.22326 1.13654 0.88126 0.92330 0.91890 0.91560 0.91018 0.90107 0.89806 0.87696 0.84604 0.84898 0.85196 0.85841 0.83219 0.95071 0.90826 0.79882 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.07 9.37 -39.27 -0.37 -5.44 16 3 C 0.43 6.37 4.21 36.00 0.15 6.52 16 4 O -0.50 -8.34 15.20 -18.75 -0.29 -8.63 16 5 C 0.14 1.77 0.71 -132.75 -0.09 1.67 16 6 C -0.14 -1.74 7.19 37.16 0.27 -1.47 16 7 C -0.07 -0.71 4.71 -27.89 -0.13 -0.84 16 8 C -0.08 -0.77 4.08 -104.62 -0.43 -1.20 16 9 C -0.09 -0.88 7.90 -39.59 -0.31 -1.19 16 10 C -0.11 -1.03 9.83 -39.54 -0.39 -1.42 16 11 C -0.04 -0.37 6.32 -39.49 -0.25 -0.62 16 12 Cl -0.08 -0.73 28.96 -51.86 -1.50 -2.24 16 13 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 14 C -0.10 -1.02 8.32 -39.59 -0.33 -1.35 16 15 N -0.66 -9.81 5.84 -101.14 -0.59 -10.40 16 16 C 0.04 0.69 4.55 -3.82 -0.02 0.67 16 17 C 0.20 4.51 2.52 -27.88 -0.07 4.44 16 18 H 0.05 1.21 7.57 -51.93 -0.39 0.81 16 19 O -0.57 -12.32 10.01 -35.23 -0.35 -12.67 16 20 C -0.57 -15.33 9.34 -34.44 -0.32 -15.65 16 21 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 22 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 23 N -0.89 -26.96 13.96 55.43 0.77 -26.18 16 24 Si 0.87 21.39 26.99 -169.99 -4.59 16.80 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.21 -5.10 5.31 56.52 0.30 -4.80 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.07 0.97 6.40 -51.93 -0.33 0.64 16 32 H 0.07 0.90 5.92 -51.92 -0.31 0.59 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.14 1.01 8.04 -52.48 -0.42 0.59 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.12 1.21 8.03 -52.49 -0.42 0.79 16 40 H 0.35 5.10 8.38 -39.29 -0.33 4.77 16 41 H 0.03 0.62 6.64 -51.93 -0.34 0.28 16 42 H 0.07 1.38 6.30 -51.93 -0.33 1.05 16 43 H 0.36 6.90 9.04 45.56 0.41 7.32 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -32.23 372.85 -8.13 -40.36 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.50 Total: 10.94 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.34 Total: -8.17 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.18 Total: -36.58 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -1.01 Total: -26.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.59 Total: 16.80 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.23 -8.13 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931506303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.426 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds