Wall clock time and date at job start Sat Apr 11 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 117.00241 * 2 1 4 4 O 1.20827 * 119.99352 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00187 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47213 * 154.99934 * 5 3 2 7 7 C 1.52993 * 109.47201 * 275.00141 * 5 3 2 8 8 C 1.50698 * 109.47393 * 300.00157 * 7 5 3 9 9 C 1.38238 * 119.98734 * 269.73093 * 8 7 5 10 10 C 1.38217 * 120.01815 * 179.72556 * 9 8 7 11 11 C 1.38360 * 119.98062 * 0.54026 * 10 9 8 12 12 Cl 1.73602 * 120.01094 * 179.70880 * 11 10 9 13 13 C 1.38352 * 119.97158 * 359.72736 * 11 10 9 14 14 C 1.38207 * 119.99070 * 0.02562 * 13 11 10 15 15 N 1.46905 * 109.47125 * 35.00090 * 5 3 2 16 16 C 1.46901 * 110.99870 * 60.00196 * 15 5 3 17 17 C 1.53004 * 109.46916 * 180.02562 * 16 15 5 18 18 H 1.08996 * 109.46939 * 60.00272 * 17 16 15 19 19 O 1.42891 * 109.46947 * 299.99729 * 17 16 15 20 20 C 1.50703 * 109.46807 * 179.97438 * 17 16 15 21 21 H 1.07995 * 120.00107 * 359.97438 * 20 17 16 22 22 C 1.37878 * 119.99714 * 179.97438 * 20 17 16 23 23 N 1.31509 * 119.99834 * 179.97438 * 22 20 17 24 24 Si 1.86799 * 120.00034 * 0.02562 * 22 20 17 25 25 H 1.48500 * 109.47154 * 89.99933 * 24 22 20 26 26 H 1.48501 * 109.47128 * 209.99734 * 24 22 20 27 27 H 1.48501 * 109.47273 * 329.99905 * 24 22 20 28 28 H 1.08998 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46567 * 299.99809 * 1 2 3 30 30 H 1.09006 * 109.47465 * 59.99518 * 1 2 3 31 31 H 1.08996 * 109.47352 * 300.00278 * 6 5 3 32 32 H 1.09012 * 109.46801 * 60.00052 * 6 5 3 33 33 H 1.08998 * 109.47171 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.47393 * 59.99721 * 7 5 3 35 35 H 1.08998 * 109.47408 * 180.02562 * 7 5 3 36 36 H 1.08003 * 119.99355 * 359.97438 * 9 8 7 37 37 H 1.07991 * 120.01125 * 180.27077 * 10 9 8 38 38 H 1.08007 * 120.00278 * 179.97438 * 13 11 10 39 39 H 1.07999 * 119.99411 * 179.97438 * 14 13 11 40 40 H 1.00901 * 110.99869 * 296.04907 * 15 5 3 41 41 H 1.09004 * 109.47031 * 299.99620 * 16 15 5 42 42 H 1.08995 * 109.47111 * 59.99900 * 16 15 5 43 43 H 0.96703 * 114.00376 * 300.00063 * 19 17 16 44 44 H 0.96997 * 120.00332 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0070 2.6072 -0.6101 7 6 4.0828 1.1757 1.4361 8 6 3.5206 2.3114 2.2516 9 6 4.2089 3.5072 2.3377 10 6 3.6911 4.5512 3.0808 11 6 2.4890 4.3955 3.7478 12 17 1.8416 5.7037 4.6876 13 6 1.8033 3.1966 3.6658 14 6 2.3196 2.1552 2.9182 15 7 4.1144 0.1677 -0.7955 16 6 3.6389 0.2307 -2.1840 17 6 4.2290 -0.9361 -2.9785 18 1 3.9141 -1.8778 -2.5291 19 8 5.6554 -0.8524 -2.9593 20 6 3.7407 -0.8718 -4.4028 21 1 3.0757 -0.0784 -4.7104 22 6 4.1430 -1.8259 -5.3132 23 7 3.7165 -1.7701 -6.5560 24 14 5.2927 -3.1987 -4.7810 25 1 4.4942 -4.3538 -4.2981 26 1 6.1266 -3.6212 -5.9349 27 1 6.1714 -2.7123 -3.6871 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.6391 2.6779 -1.6337 32 1 3.6003 3.4288 -0.0203 33 1 5.0955 2.6645 -0.6101 34 1 3.7689 0.2265 1.8704 35 1 5.1713 1.2332 1.4358 36 1 5.1497 3.6270 1.8208 37 1 4.2268 5.4867 3.1444 38 1 0.8650 3.0744 4.1866 39 1 1.7846 1.2192 2.8545 40 1 3.8914 -0.7229 -0.3769 41 1 2.5509 0.1664 -2.1987 42 1 3.9534 1.1726 -2.6333 43 1 6.0069 -0.0381 -3.3446 44 1 3.9998 -2.4411 -7.1966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931506303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:21 Heat of formation + Delta-G solvation = -134.629834 kcal Electronic energy + Delta-G solvation = -28306.415313 eV Core-core repulsion = 24248.939380 eV Total energy + Delta-G solvation = -4057.475933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.11639 -40.32242 -38.81718 -37.82719 -37.44326 -36.93001 -34.38485 -33.82159 -32.09290 -31.20681 -29.51193 -28.95435 -27.99286 -26.01024 -24.56870 -23.69154 -22.78194 -22.07015 -20.77048 -19.37735 -18.64878 -18.08425 -17.93304 -17.59513 -16.90629 -16.73241 -16.48769 -16.21043 -15.99523 -15.45791 -15.29897 -14.96473 -14.74676 -14.49776 -14.35855 -14.34075 -14.20988 -13.57155 -13.49896 -13.35832 -13.14340 -12.96832 -12.92178 -12.88307 -12.59246 -12.55157 -12.35879 -12.16024 -11.94517 -11.82987 -11.78347 -11.72392 -11.55881 -11.05062 -10.77988 -10.09679 -9.99281 -9.56794 -9.50865 -8.32781 -6.48394 0.10423 0.32351 1.11844 1.13861 1.44731 1.50552 1.67520 1.80923 2.47578 2.56777 3.03702 3.07430 3.55075 3.75898 3.78830 3.83905 3.93648 4.02845 4.13863 4.21364 4.23428 4.30516 4.33777 4.36101 4.48276 4.61864 4.66954 4.70976 4.74890 4.76270 4.96822 4.97914 5.02685 5.19929 5.21387 5.24458 5.35612 5.46180 5.50875 5.54236 5.82157 5.84510 6.10325 6.33612 6.64590 6.67483 7.25284 7.41384 8.81545 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023289 B = 0.002668 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.990223 B =10492.685658 C =10962.398723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.432 3.568 4 O -0.526 6.526 5 C 0.138 3.862 6 C -0.133 4.133 7 C -0.062 4.062 8 C -0.084 4.084 9 C -0.095 4.095 10 C -0.114 4.114 11 C -0.047 4.047 12 Cl -0.076 7.076 13 C -0.117 4.117 14 C -0.108 4.108 15 N -0.644 5.644 16 C 0.055 3.945 17 C 0.212 3.788 18 H 0.053 0.947 19 O -0.569 6.569 20 C -0.567 4.567 21 H 0.029 0.971 22 C 0.026 3.974 23 N -0.942 5.942 24 Si 0.942 3.058 25 H -0.286 1.286 26 H -0.301 1.301 27 H -0.197 1.197 28 H 0.126 0.874 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.354 0.646 41 H 0.013 0.987 42 H 0.070 0.930 43 H 0.367 0.633 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 9.143 24.292 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C 0.273 3.727 4 O -0.413 6.413 5 C 0.044 3.956 6 C -0.190 4.190 7 C -0.100 4.100 8 C -0.084 4.084 9 C -0.113 4.113 10 C -0.133 4.133 11 C -0.074 4.074 12 Cl -0.047 7.047 13 C -0.135 4.135 14 C -0.126 4.126 15 N -0.276 5.276 16 C -0.074 4.074 17 C 0.153 3.847 18 H 0.071 0.929 19 O -0.375 6.375 20 C -0.605 4.605 21 H 0.048 0.952 22 C -0.173 4.173 23 N -0.582 5.582 24 Si 0.766 3.234 25 H -0.212 1.212 26 H -0.228 1.228 27 H -0.118 1.118 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.176 0.824 37 H 0.168 0.832 38 H 0.156 0.844 39 H 0.143 0.857 40 H 0.174 0.826 41 H 0.031 0.969 42 H 0.088 0.912 43 H 0.214 0.786 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.082 9.229 24.380 26.069 hybrid contribution -1.723 -0.103 -0.838 1.918 sum -1.640 9.126 23.542 25.303 Atomic orbital electron populations 1.23455 0.75489 1.05372 1.02071 1.86525 1.24597 1.33569 1.83630 1.25769 0.94362 0.81285 0.71256 1.90621 1.67885 1.37082 1.45753 1.21243 0.81908 0.95614 0.96805 1.21912 1.03707 0.93402 1.00026 1.20670 1.03625 0.97273 0.88401 1.19953 0.95025 0.96016 0.97433 1.21329 1.00901 0.91375 0.97654 1.21305 0.94353 1.00779 0.96837 1.21095 0.96804 0.90192 0.99305 1.98363 1.86302 1.48362 1.71670 1.21119 1.00507 0.91835 1.00080 1.21080 0.95717 0.98933 0.96879 1.60592 1.60056 1.05585 1.01364 1.22427 0.95945 1.00568 0.88477 1.19408 0.79567 0.94065 0.91615 0.92886 1.86585 1.21713 1.44497 1.84675 1.21812 1.30361 1.12308 0.96013 0.95220 1.25913 0.96832 1.00330 0.94267 1.70095 1.46223 1.36811 1.05039 0.85945 0.80261 0.77452 0.79725 1.21247 1.22811 1.11811 0.85538 0.91124 0.93416 0.93997 0.90690 0.88034 0.88871 0.85782 0.82448 0.83228 0.84436 0.85664 0.82631 0.96885 0.91179 0.78556 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 16 2 O -0.37 -10.03 9.37 -51.47 -0.48 -10.51 16 3 C 0.43 12.30 4.21 71.23 0.30 12.60 16 4 O -0.53 -17.33 15.20 21.96 0.33 -16.99 16 5 C 0.14 3.31 0.71 2.78 0.00 3.31 16 6 C -0.13 -3.17 7.19 71.98 0.52 -2.66 16 7 C -0.06 -1.09 4.71 29.85 0.14 -0.95 16 8 C -0.08 -1.53 4.08 -19.86 -0.08 -1.61 16 9 C -0.09 -1.52 7.90 22.26 0.18 -1.35 16 10 C -0.11 -1.92 9.83 22.29 0.22 -1.70 16 11 C -0.05 -0.91 6.32 22.33 0.14 -0.77 16 12 Cl -0.08 -1.37 28.96 -2.72 -0.08 -1.45 16 13 C -0.12 -2.27 9.83 22.29 0.22 -2.05 16 14 C -0.11 -2.12 8.32 22.26 0.19 -1.93 16 15 N -0.64 -17.84 5.84 -473.89 -2.77 -20.61 16 16 C 0.06 2.00 4.55 86.30 0.39 2.39 16 17 C 0.21 9.15 2.52 29.85 0.08 9.23 16 18 H 0.05 2.33 7.57 -2.39 -0.02 2.31 16 19 O -0.57 -22.98 10.01 -148.98 -1.49 -24.47 16 20 C -0.57 -31.06 9.34 25.60 0.24 -30.83 16 21 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 22 C 0.03 1.48 5.47 84.66 0.46 1.94 16 23 N -0.94 -58.11 13.96 21.45 0.30 -57.81 16 24 Si 0.94 43.84 26.99 68.60 1.85 45.69 16 25 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 26 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.20 -8.53 5.31 99.48 0.53 -8.00 16 28 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 30 H 0.05 1.20 8.13 -2.38 -0.02 1.18 16 31 H 0.04 1.20 6.40 -2.39 -0.02 1.18 16 32 H 0.07 1.74 5.92 -2.38 -0.01 1.73 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 35 H 0.12 1.73 8.08 -2.39 -0.02 1.71 16 36 H 0.16 1.78 8.04 -2.91 -0.02 1.75 16 37 H 0.15 1.92 8.06 -2.92 -0.02 1.90 16 38 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.13 2.32 8.03 -2.91 -0.02 2.29 16 40 H 0.35 9.42 8.38 -89.69 -0.75 8.67 16 41 H 0.01 0.52 6.64 -2.39 -0.02 0.51 16 42 H 0.07 2.61 6.30 -2.39 -0.02 2.59 16 43 H 0.37 13.33 9.04 -74.06 -0.67 12.66 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -69.73 372.85 1.29 -68.44 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.56 Total: 30.22 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 4.19 Total: -12.51 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -2.47 Total: -78.42 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -1.64 Total: -51.98 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.85 Total: 45.69 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -69.73 1.29 -68.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931506303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.190 kcal (2) G-P(sol) polarization free energy of solvation -69.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds