Wall clock time and date at job start Sat Apr 11 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32566 * 121.64377 * 2 1 4 4 S 1.77235 * 105.31340 * 179.97438 * 3 2 1 5 5 C 1.72207 * 94.85012 * 359.97438 * 4 3 2 6 6 O 1.21822 * 127.05901 * 180.02562 * 5 4 3 7 7 N 1.34243 * 105.88283 * 0.26371 * 5 4 3 8 8 C 1.46498 * 121.38066 * 179.71966 * 7 5 4 9 9 C 1.50696 * 109.47396 * 90.02186 * 8 7 5 10 10 O 1.21283 * 120.00098 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00463 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99748 * 359.97438 * 11 9 8 13 13 C 1.46500 * 120.00552 * 180.02562 * 11 9 8 14 14 H 1.09000 * 110.63622 * 3.13395 * 13 11 9 15 15 C 1.54319 * 110.72706 * 126.47234 * 13 11 9 16 16 N 1.47011 * 107.27324 * 140.55548 * 15 13 11 17 17 C 1.36940 * 125.65107 * 181.02800 * 16 15 13 18 18 H 1.07997 * 120.00585 * 162.08977 * 17 16 15 19 19 C 1.38816 * 119.99534 * 342.08676 * 17 16 15 20 20 N 1.31623 * 119.99987 * 156.31442 * 19 17 16 21 21 Si 1.86799 * 120.00063 * 336.31278 * 19 17 16 22 22 H 1.48503 * 109.46951 * 84.67484 * 21 19 17 23 23 H 1.48504 * 109.47122 * 204.67217 * 21 19 17 24 24 H 1.48493 * 109.47392 * 324.67462 * 21 19 17 25 25 C 1.47425 * 108.70445 * 1.05989 * 16 15 13 26 26 C 1.54907 * 104.83121 * 335.87047 * 25 16 15 27 27 H 1.08998 * 111.00624 * 278.93441 * 26 25 16 28 28 O 1.42905 * 111.00341 * 155.07892 * 26 25 16 29 29 H 1.09003 * 109.46857 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47242 * 119.97291 * 1 2 3 31 31 H 1.08994 * 109.47421 * 239.97366 * 1 2 3 32 32 H 1.07995 * 127.34152 * 359.96934 * 3 2 1 33 33 H 1.08995 * 109.47521 * 210.02586 * 8 7 5 34 34 H 1.09001 * 109.46773 * 330.02479 * 8 7 5 35 35 H 1.09001 * 109.46990 * 90.00515 * 12 11 9 36 36 H 1.09007 * 109.47446 * 210.00471 * 12 11 9 37 37 H 1.09000 * 109.47580 * 330.00569 * 12 11 9 38 38 H 1.08994 * 109.88400 * 259.97695 * 15 13 11 39 39 H 1.09008 * 109.87947 * 21.13571 * 15 13 11 40 40 H 0.96996 * 119.99965 * 179.97438 * 20 19 17 41 41 H 1.08998 * 110.36987 * 217.03159 * 25 16 15 42 42 H 1.09002 * 110.45869 * 94.76089 * 25 16 15 43 43 H 0.96706 * 113.99485 * 67.80351 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9034 0.6302 0.0008 5 6 3.5606 -1.0574 0.0018 6 8 4.3672 -1.9703 0.0030 7 7 2.2222 -1.1605 -0.0044 8 6 1.5576 -2.4660 -0.0116 9 6 1.3230 -2.9182 1.4066 10 8 1.6766 -2.2190 2.3324 11 7 0.7212 -4.1000 1.6464 12 6 0.2947 -4.9449 0.5282 13 6 0.4926 -4.5393 3.0251 14 1 0.8164 -3.7743 3.7308 15 6 -0.9922 -4.8974 3.2452 16 7 -1.0310 -6.0934 4.0992 17 6 -2.1636 -6.7432 4.5117 18 1 -2.1004 -7.7548 4.8846 19 6 -3.3930 -6.1015 4.4508 20 7 -4.5017 -6.8080 4.3871 21 14 -3.4740 -4.2352 4.4591 22 1 -3.2918 -3.7257 3.0762 23 1 -4.7957 -3.7994 4.9772 24 1 -2.3988 -3.6970 5.3306 25 6 0.3514 -6.4770 4.4385 26 6 1.2185 -5.8827 3.3007 27 1 1.2004 -6.5244 2.4198 28 8 2.5593 -5.6593 3.7417 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5134 -0.8902 31 1 -0.3634 -0.5142 0.8897 32 1 1.8152 2.1367 -0.0005 33 1 0.6022 -2.3846 -0.5298 34 1 2.1884 -3.1919 -0.5247 35 1 1.1048 -5.6204 0.2535 36 1 -0.5785 -5.5264 0.8245 37 1 0.0402 -4.3168 -0.3255 38 1 -1.5032 -4.0716 3.7403 39 1 -1.4681 -5.1098 2.2878 40 1 -5.3608 -6.3596 4.3449 41 1 0.4490 -7.5623 4.4624 42 1 0.6407 -6.0497 5.3987 43 1 3.0527 -6.4702 3.9265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047624601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:24 Heat of formation + Delta-G solvation = -58.189511 kcal Electronic energy + Delta-G solvation = -28729.946892 eV Core-core repulsion = 24710.122118 eV Total energy + Delta-G solvation = -4019.824774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.42470 -41.12746 -39.53860 -38.67251 -36.99112 -36.46713 -34.21384 -33.58192 -31.70440 -30.55783 -29.53156 -28.07064 -27.67210 -26.01722 -24.86220 -23.00005 -22.37778 -21.55813 -20.37411 -19.33170 -19.10629 -19.03538 -18.37935 -18.19716 -17.55330 -17.12352 -16.78634 -16.58241 -16.09494 -15.91013 -15.40866 -15.32583 -15.19588 -14.68500 -14.64121 -14.52729 -14.35993 -14.27474 -13.84934 -13.79966 -13.52208 -13.48371 -13.29106 -13.13172 -12.96324 -12.63839 -12.55379 -12.26770 -12.15072 -11.92540 -11.52356 -11.46599 -11.29224 -11.15287 -10.80144 -10.54459 -9.84233 -9.20429 -9.00332 -8.24839 -5.51997 -0.16938 0.36635 0.78395 0.99773 1.20428 1.29507 1.34293 1.41685 1.55400 1.85421 2.32804 2.77819 3.05565 3.24160 3.31428 3.49854 3.52600 3.67593 3.79771 3.91264 3.95430 4.10518 4.16820 4.22605 4.29792 4.45179 4.51760 4.61514 4.62956 4.65044 4.74064 4.79935 4.87505 4.89779 4.98760 5.19713 5.29301 5.55406 5.63253 6.03585 6.08831 6.20155 6.62460 6.78353 6.86409 7.43270 7.96327 8.94603 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.003472 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.651082 B = 8061.858566 C = 9082.264231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.093 3.907 3 C -0.223 4.223 4 S 0.001 5.999 5 C 0.466 3.534 6 O -0.519 6.519 7 N -0.519 5.519 8 C 0.088 3.912 9 C 0.496 3.504 10 O -0.574 6.574 11 N -0.596 5.596 12 C 0.054 3.946 13 C 0.144 3.856 14 H 0.083 0.917 15 C 0.117 3.883 16 N -0.618 5.618 17 C -0.236 4.236 18 H 0.073 0.927 19 C -0.022 4.022 20 N -0.943 5.943 21 Si 0.937 3.063 22 H -0.264 1.264 23 H -0.304 1.304 24 H -0.292 1.292 25 C 0.102 3.898 26 C 0.099 3.901 27 H 0.096 0.904 28 O -0.569 6.569 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.229 0.771 33 H 0.169 0.831 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.012 0.988 39 H 0.063 0.937 40 H 0.265 0.735 41 H 0.070 0.930 42 H 0.028 0.972 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.014 13.100 -16.678 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.016 4.016 3 C -0.360 4.360 4 S 0.244 5.756 5 C 0.150 3.850 6 O -0.402 6.402 7 N -0.239 5.239 8 C -0.040 4.040 9 C 0.284 3.716 10 O -0.453 6.453 11 N -0.329 5.329 12 C -0.087 4.087 13 C 0.039 3.961 14 H 0.101 0.899 15 C -0.009 4.009 16 N -0.347 5.347 17 C -0.364 4.364 18 H 0.091 0.909 19 C -0.218 4.218 20 N -0.589 5.589 21 Si 0.768 3.232 22 H -0.190 1.190 23 H -0.232 1.232 24 H -0.220 1.220 25 C -0.024 4.024 26 C 0.038 3.962 27 H 0.114 0.886 28 O -0.377 6.377 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.246 0.754 33 H 0.186 0.814 34 H 0.156 0.844 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.131 0.869 38 H 0.030 0.970 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 12.475 14.125 -16.279 24.903 hybrid contribution -1.307 -0.812 1.062 1.870 sum 11.168 13.313 -15.217 23.098 Atomic orbital electron populations 1.20920 0.84235 1.07006 1.03755 1.19967 0.97271 0.84111 1.00252 1.25433 0.90885 1.02641 1.17010 1.85036 1.11143 0.99062 1.80367 1.21974 0.84146 0.96516 0.82400 1.90922 1.49893 1.44115 1.55287 1.45753 1.05884 1.07865 1.64373 1.21958 1.03379 0.85103 0.93574 1.21426 0.76913 0.80793 0.92506 1.90725 1.51929 1.55397 1.47211 1.47767 1.58575 1.19741 1.06770 1.22339 1.01915 0.96306 0.88142 1.21695 0.93583 0.96542 0.84329 0.89901 1.21908 0.94227 0.89324 0.95427 1.44636 1.02144 1.31207 1.56666 1.18620 0.83706 0.95920 1.38185 0.90903 1.25426 0.94820 1.00673 1.00911 1.69931 0.98093 1.36440 1.54477 0.86101 0.74616 0.83813 0.78641 1.19033 1.23245 1.21980 1.22426 0.83922 0.99711 0.96314 1.23130 0.81711 0.94972 0.96377 0.88599 1.86525 1.24123 1.37626 1.89428 0.86304 0.87514 0.91996 0.75414 0.81369 0.84444 0.90007 0.90283 0.86851 0.97020 0.91944 0.92529 0.91133 0.95413 0.75100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.01 71.24 0.64 -0.36 16 2 C 0.09 1.55 6.59 40.71 0.27 1.81 16 3 C -0.22 -3.25 11.18 66.67 0.75 -2.51 16 4 S 0.00 0.02 22.97 -56.49 -1.30 -1.28 16 5 C 0.47 13.17 8.27 129.87 1.07 14.25 16 6 O -0.52 -18.32 17.55 -4.74 -0.08 -18.40 16 7 N -0.52 -11.58 2.09 -647.52 -1.35 -12.93 16 8 C 0.09 1.65 4.29 85.63 0.37 2.02 16 9 C 0.50 14.30 7.74 87.66 0.68 14.98 16 10 O -0.57 -22.39 15.80 -3.04 -0.05 -22.44 16 11 N -0.60 -16.44 2.89 -815.96 -2.35 -18.79 16 12 C 0.05 0.95 9.10 127.77 1.16 2.11 16 13 C 0.14 5.12 3.10 46.18 0.14 5.26 16 14 H 0.08 3.52 7.00 -2.39 -0.02 3.50 16 15 C 0.12 4.81 4.72 86.73 0.41 5.22 16 16 N -0.62 -28.51 3.21 -692.02 -2.22 -30.73 16 17 C -0.24 -12.97 10.56 84.03 0.89 -12.08 16 18 H 0.07 4.27 8.06 -2.91 -0.02 4.24 16 19 C -0.02 -1.27 5.43 84.86 0.46 -0.81 16 20 N -0.94 -56.79 13.97 21.65 0.30 -56.49 16 21 Si 0.94 46.23 24.39 68.60 1.67 47.91 16 22 H -0.26 -11.89 6.84 99.48 0.68 -11.21 16 23 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 24 H -0.29 -14.90 6.87 99.48 0.68 -14.22 16 25 C 0.10 3.82 6.97 86.85 0.61 4.42 16 26 C 0.10 3.11 4.00 31.99 0.13 3.24 16 27 H 0.10 2.57 7.29 -2.39 -0.02 2.55 16 28 O -0.57 -17.21 13.47 -148.98 -2.01 -19.22 16 29 H 0.12 0.58 7.99 -2.39 -0.02 0.56 16 30 H 0.11 0.51 7.62 -2.39 -0.02 0.50 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.23 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.17 1.50 6.08 -2.39 -0.01 1.49 16 34 H 0.14 2.28 7.77 -2.39 -0.02 2.26 16 35 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 36 H 0.08 1.65 6.08 -2.38 -0.01 1.64 16 37 H 0.11 1.02 6.44 -2.39 -0.02 1.01 16 38 H 0.01 0.57 3.52 -2.39 -0.01 0.56 16 39 H 0.06 2.44 5.93 -2.38 -0.01 2.43 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16 43 H 0.40 7.79 9.12 -74.05 -0.68 7.11 16 Total: -1.00 -85.88 359.89 0.53 -85.35 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.34 Total: 9.48 kcal Atomic # 6 Polarization: 29.97 SS G_CDS: 7.57 Total: 37.54 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -5.63 Total: -118.94 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -2.14 Total: -60.06 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.91 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.30 Total: -1.28 kcal Total: -85.88 0.53 -85.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047624601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.161 kcal (2) G-P(sol) polarization free energy of solvation -85.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds