Wall clock time and date at job start Sat Apr 11 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.29946 * 125.37981 * 2 1 4 4 C 1.36063 * 108.47609 * 180.16851 * 3 2 1 5 5 C 1.47428 * 126.44571 * 179.82662 * 4 3 2 6 6 O 1.21614 * 119.99570 * 179.68803 * 5 4 3 7 7 N 1.34769 * 119.99697 * 359.68443 * 5 4 3 8 8 C 1.46505 * 119.99686 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47068 * 324.99893 * 8 7 5 10 10 C 1.53002 * 109.47411 * 84.99974 * 8 7 5 11 11 C 1.52997 * 109.47212 * 204.99833 * 8 7 5 12 12 C 1.53004 * 109.47236 * 64.99775 * 11 8 7 13 13 N 1.46499 * 109.47194 * 180.02562 * 12 11 8 14 14 C 1.34783 * 119.99833 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00013 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99711 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.46704 * 179.97438 * 16 14 13 18 18 C 1.76210 * 99.99828 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99512 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99860 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00246 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99953 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46954 * 89.99770 * 22 20 18 24 24 H 1.48494 * 109.47026 * 209.99820 * 22 20 18 25 25 H 1.48501 * 109.47073 * 329.99857 * 22 20 18 26 26 C 1.36094 * 107.10493 * 359.55882 * 4 3 2 27 27 O 1.34055 * 125.38495 * 179.67776 * 2 1 3 28 28 H 1.09001 * 109.47067 * 180.34932 * 1 2 3 29 29 H 1.09006 * 109.47328 * 300.34658 * 1 2 3 30 30 H 1.09003 * 109.47676 * 60.34811 * 1 2 3 31 31 H 0.97000 * 120.00680 * 0.02562 * 7 5 4 32 32 H 1.09002 * 109.47075 * 59.99363 * 10 8 7 33 33 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 34 34 H 1.09000 * 109.46986 * 300.00092 * 10 8 7 35 35 H 1.09001 * 109.47630 * 184.99905 * 11 8 7 36 36 H 1.09004 * 109.47346 * 305.00035 * 11 8 7 37 37 H 1.09001 * 109.46917 * 300.00567 * 12 11 8 38 38 H 1.09004 * 109.46741 * 59.99889 * 12 11 8 39 39 H 0.96997 * 120.00325 * 359.97438 * 13 12 11 40 40 H 1.08993 * 109.47443 * 299.99991 * 16 14 13 41 41 H 1.09004 * 109.46924 * 60.00453 * 16 14 13 42 42 H 0.97002 * 120.00030 * 180.02562 * 21 20 18 43 43 H 1.07999 * 126.52232 * 180.28389 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5611 0.6639 -0.0038 5 6 4.7439 1.5439 -0.0087 6 8 5.8604 1.0619 -0.0061 7 7 4.5877 2.8825 -0.0162 8 6 5.7631 3.7570 -0.0217 9 1 6.5574 3.3019 0.5700 10 6 6.2468 3.9525 -1.4600 11 6 5.3922 5.1138 0.5804 12 6 5.0277 4.9347 2.0555 13 7 4.6719 6.2337 2.6319 14 6 4.3141 6.3204 3.9284 15 8 4.2862 5.3230 4.6178 16 6 3.9487 7.6568 4.5214 17 16 3.5174 7.4448 6.2664 18 6 3.1436 9.1128 6.6940 19 1 3.2208 9.8913 5.9495 20 6 2.7510 9.4263 7.9879 21 7 2.6575 8.4774 8.8954 22 14 2.3541 11.1945 8.4410 23 1 0.9109 11.4537 8.2058 24 1 2.6706 11.4212 9.8740 25 1 3.1651 12.1142 7.6034 26 6 3.5659 -0.6970 0.0039 27 8 2.2832 -1.0929 0.0061 28 1 -0.3633 -1.0277 0.0063 29 1 -0.3634 0.5192 0.8869 30 1 -0.3634 0.5084 -0.8931 31 1 3.6972 3.2670 -0.0180 32 1 5.4525 4.4076 -2.0518 33 1 7.1215 4.6028 -1.4641 34 1 6.5111 2.9859 -1.8890 35 1 6.2403 5.7931 0.4956 36 1 4.5392 5.5287 0.0432 37 1 4.1796 4.2553 2.1403 38 1 5.8807 4.5197 2.5927 39 1 4.6946 7.0315 2.0806 40 1 4.7967 8.3362 4.4363 41 1 3.0955 8.0714 3.9844 42 1 2.3828 8.6965 9.7996 43 1 4.4361 -1.3367 0.0078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:31 Heat of formation + Delta-G solvation = -64.670585 kcal Electronic energy + Delta-G solvation = -25881.037309 eV Core-core repulsion = 21860.931494 eV Total energy + Delta-G solvation = -4020.105815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.81973 -40.07969 -39.10963 -36.85451 -35.32013 -34.41562 -32.72045 -32.42433 -31.73466 -30.06816 -28.26898 -28.11731 -25.49383 -24.96771 -23.34419 -22.11598 -21.28577 -20.81685 -20.26973 -18.57529 -17.82158 -17.31630 -16.92134 -16.66872 -16.18012 -15.96141 -15.36697 -15.10272 -14.84393 -14.80047 -14.38556 -14.19491 -13.96145 -13.86373 -13.74114 -13.59899 -13.21020 -13.01150 -12.92079 -12.57715 -12.36059 -12.16025 -11.69997 -11.60066 -11.52113 -11.28648 -11.19679 -11.06071 -11.01998 -10.75704 -10.49975 -9.81280 -9.54998 -9.39282 -9.29024 -9.06663 -8.87199 -8.22688 -6.49435 -6.21156 -3.91736 0.72761 1.60472 2.16869 2.74565 2.98399 3.03319 3.11790 3.22517 3.28033 3.32149 3.45916 3.69912 4.20821 4.32937 4.37418 4.48871 4.56319 4.75547 4.82981 4.92143 5.04964 5.06561 5.09429 5.13902 5.22704 5.23898 5.30896 5.32657 5.38011 5.57910 5.64051 5.69165 5.77102 5.85439 5.90696 5.95449 6.14345 6.15557 6.61362 6.96675 7.25962 7.59893 7.71506 7.83546 8.35652 8.63087 9.24023 10.86274 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.001965 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.797720 B =14244.714190 C =15619.747674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.200 3.800 3 N -0.462 5.462 4 C -0.073 4.073 5 C 0.606 3.394 6 O -0.536 6.536 7 N -0.707 5.707 8 C 0.145 3.855 9 H 0.095 0.905 10 C -0.162 4.162 11 C -0.139 4.139 12 C 0.120 3.880 13 N -0.740 5.740 14 C 0.530 3.470 15 O -0.517 6.517 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.013 3.987 27 O -0.197 6.197 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.410 0.590 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 -14.662 -25.502 29.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.009 4.009 3 N -0.193 5.193 4 C -0.193 4.193 5 C 0.392 3.608 6 O -0.413 6.413 7 N -0.358 5.358 8 C 0.040 3.960 9 H 0.113 0.887 10 C -0.220 4.220 11 C -0.178 4.178 12 C -0.004 4.004 13 N -0.395 5.395 14 C 0.316 3.684 15 O -0.391 6.391 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.061 4.061 27 O -0.083 6.083 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.246 0.754 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.677 -16.105 -24.140 29.027 hybrid contribution -0.313 2.183 -0.740 2.326 sum 0.363 -13.922 -24.880 28.513 Atomic orbital electron populations 1.20348 0.80706 1.05082 1.05572 1.26383 0.96729 0.78184 0.99601 1.70751 1.00619 1.30007 1.17939 1.21770 0.92177 0.93071 1.12270 1.16709 0.86159 0.81940 0.76019 1.90832 1.24265 1.75416 1.50813 1.45898 1.10695 1.05270 1.73985 1.20969 0.88273 0.89435 0.97315 0.88651 1.22168 1.01545 1.02639 0.95684 1.22127 1.03309 0.96881 0.95439 1.21264 1.01018 0.86035 0.92089 1.45987 1.71795 1.10086 1.11585 1.20322 0.75950 0.91057 0.81035 1.90710 1.50745 1.37879 1.59741 1.23526 1.04336 0.96517 1.05974 1.85423 1.87619 1.12854 0.97561 1.22867 1.53158 0.93363 0.98940 0.90926 1.25000 0.94871 0.98484 0.95285 1.70021 1.44392 1.32390 1.03494 0.86162 0.78751 0.82751 0.77798 1.20272 1.20756 1.19700 1.25282 0.84888 0.95674 1.00267 1.84409 1.16717 1.37990 1.69154 0.89101 0.87956 0.88204 0.75386 0.92247 0.91186 0.91879 0.89232 0.90409 0.91570 0.91531 0.76852 0.89223 0.89234 0.92186 0.75287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.00 0.38 0.14 16 2 C 0.20 1.66 8.30 -13.08 -0.11 1.55 16 3 N -0.46 -4.81 11.06 -7.65 -0.08 -4.89 16 4 C -0.07 -0.78 6.99 -83.02 -0.58 -1.36 16 5 C 0.61 6.98 7.78 -12.52 -0.10 6.88 16 6 O -0.54 -7.34 16.55 5.27 0.09 -7.26 16 7 N -0.71 -6.72 4.53 -54.88 -0.25 -6.97 16 8 C 0.14 1.21 2.57 -67.93 -0.17 1.03 16 9 H 0.10 0.95 7.58 -51.93 -0.39 0.55 16 10 C -0.16 -1.14 9.48 37.16 0.35 -0.78 16 11 C -0.14 -1.03 4.87 -26.73 -0.13 -1.16 16 12 C 0.12 1.40 5.56 -4.04 -0.02 1.38 16 13 N -0.74 -9.71 5.56 -60.29 -0.33 -10.05 16 14 C 0.53 10.02 7.85 -10.98 -0.09 9.94 16 15 O -0.52 -12.06 15.86 5.56 0.09 -11.98 16 16 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 22 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 C 0.01 0.11 11.95 29.96 0.36 0.47 16 27 O -0.20 -1.66 10.73 6.53 0.07 -1.59 16 28 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.41 3.62 8.33 -40.82 -0.34 3.28 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 41 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.23 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -38.39 391.83 -6.81 -45.20 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.10 Total: 2.48 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 0.31 Total: 2.20 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.07 Total: -47.48 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.25 Total: -20.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.39 -6.81 -45.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.470 kcal (2) G-P(sol) polarization free energy of solvation -38.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds