Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32572 * 121.64551 * 2 1 4 4 S 1.77230 * 105.31818 * 180.02562 * 3 2 1 5 5 C 1.72211 * 94.84762 * 359.81091 * 4 3 2 6 6 O 1.21829 * 127.05548 * 180.20627 * 5 4 3 7 7 N 1.34241 * 105.88491 * 0.32155 * 5 4 3 8 8 C 1.46505 * 121.38015 * 179.88359 * 7 5 4 9 9 C 1.50702 * 109.46613 * 269.71784 * 8 7 5 10 10 O 1.21277 * 120.00093 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99511 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00037 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.44838 * 35.03475 * 12 11 9 14 14 C 1.53042 * 109.46158 * 275.07198 * 12 11 9 15 15 C 1.53192 * 109.31216 * 178.61318 * 14 12 11 16 16 N 1.46919 * 108.77635 * 54.63525 * 15 14 12 17 17 C 1.36932 * 120.63130 * 126.41586 * 16 15 14 18 18 H 1.08004 * 120.00164 * 331.80697 * 17 16 15 19 19 C 1.38814 * 120.00237 * 151.81242 * 17 16 15 20 20 N 1.31625 * 119.99827 * 343.07241 * 19 17 16 21 21 Si 1.86801 * 120.00333 * 163.07796 * 19 17 16 22 22 H 1.48506 * 109.47246 * 89.99725 * 21 19 17 23 23 H 1.48493 * 109.47438 * 209.99651 * 21 19 17 24 24 H 1.48498 * 109.47123 * 330.00069 * 21 19 17 25 25 C 1.46928 * 118.73929 * 306.39082 * 16 15 14 26 26 C 1.53042 * 109.46006 * 155.00160 * 12 11 9 27 27 H 1.08998 * 109.52479 * 301.35625 * 26 12 11 28 28 O 1.42902 * 109.49715 * 61.43800 * 26 12 11 29 29 H 1.08995 * 109.47140 * 269.97954 * 1 2 3 30 30 H 1.08998 * 109.47070 * 29.97898 * 1 2 3 31 31 H 1.09000 * 109.46909 * 149.97880 * 1 2 3 32 32 H 1.07996 * 127.33672 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.47184 * 149.71841 * 8 7 5 34 34 H 1.09002 * 109.46717 * 29.71468 * 8 7 5 35 35 H 0.97005 * 119.99988 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.49536 * 58.66027 * 14 12 11 37 37 H 1.08994 * 109.52180 * 298.57744 * 14 12 11 38 38 H 1.09005 * 109.58473 * 294.84969 * 15 14 12 39 39 H 1.08998 * 109.58593 * 174.42610 * 15 14 12 40 40 H 0.96996 * 119.99414 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.58708 * 293.81755 * 25 16 15 42 42 H 1.09004 * 109.58945 * 173.39533 * 25 16 15 43 43 H 0.96698 * 113.99956 * 179.83809 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1286 0.0000 4 16 3.9034 0.6304 -0.0008 5 6 3.5607 -1.0573 0.0046 6 8 4.3674 -1.9702 0.0098 7 7 2.2222 -1.1604 -0.0006 8 6 1.5577 -2.4661 -0.0006 9 6 1.3294 -2.9134 -1.4215 10 8 1.6870 -2.2110 -2.3432 11 7 0.7288 -4.0945 -1.6678 12 6 0.5063 -4.5291 -3.0490 13 1 1.3364 -4.1967 -3.6723 14 6 -0.7980 -3.9219 -3.5708 15 6 -1.0097 -4.3504 -5.0263 16 7 -0.9548 -5.8167 -5.1003 17 6 -1.9752 -6.5249 -5.6768 18 1 -2.9796 -6.1278 -5.6695 19 6 -1.7188 -7.7532 -6.2704 20 7 -0.4845 -8.0895 -6.5804 21 14 -3.1253 -8.9288 -6.6297 22 1 -3.6581 -8.6623 -7.9900 23 1 -2.6323 -10.3276 -6.5566 24 1 -4.2038 -8.7311 -5.6282 25 6 0.2161 -6.5087 -4.5445 26 6 0.4141 -6.0561 -3.0944 27 1 1.3339 -6.4884 -2.7007 28 8 -0.6940 -6.4907 -2.3036 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.8152 2.1367 0.0004 33 1 0.6000 -2.3863 0.5136 34 1 2.1863 -3.1937 0.5128 35 1 0.4431 -4.6564 -0.9305 36 1 -0.7405 -2.8347 -3.5163 37 1 -1.6320 -4.2730 -2.9633 38 1 -0.2249 -3.9233 -5.6508 39 1 -1.9836 -4.0033 -5.3714 40 1 -0.3055 -8.9476 -6.9955 41 1 1.1008 -6.2578 -5.1297 42 1 0.0510 -7.5859 -4.5717 43 1 -0.8143 -7.4501 -2.2888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090793639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = -56.051280 kcal Electronic energy + Delta-G solvation = -28228.548496 eV Core-core repulsion = 24208.816442 eV Total energy + Delta-G solvation = -4019.732054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43390 -39.59908 -37.99562 -37.64876 -34.85894 -34.43412 -32.87408 -32.14367 -30.64855 -29.37604 -29.09653 -26.99586 -25.09046 -23.92661 -22.54137 -22.00388 -21.00614 -20.22924 -19.45202 -18.28963 -17.76283 -17.43939 -17.17024 -16.06269 -15.82971 -15.57679 -15.38996 -15.08191 -14.87145 -14.38530 -14.06624 -13.96279 -13.91664 -13.88363 -13.68943 -13.35218 -13.01118 -12.77685 -12.44059 -12.16981 -12.06145 -11.81911 -11.38001 -11.32472 -11.23259 -10.83413 -10.65924 -10.54525 -10.39704 -10.28814 -10.16501 -10.12075 -9.79675 -9.54256 -9.24373 -8.83633 -8.55248 -8.15054 -6.73210 -5.86320 -3.27588 0.75181 1.18752 1.56528 1.92321 2.44316 2.51071 3.21189 3.32710 3.40228 3.42500 4.17499 4.43440 4.43921 4.55589 4.74417 4.75990 4.79136 5.05586 5.12552 5.23148 5.26809 5.33715 5.39541 5.40085 5.49073 5.82311 5.86555 5.97200 6.12935 6.17159 6.36911 6.44898 6.46815 6.71160 6.73914 6.90784 7.09566 7.09824 7.37076 7.53679 7.73281 8.14301 8.19730 8.37739 9.12775 9.75797 10.32751 11.22569 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027975 B = 0.002478 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.656103 B =11294.843535 C =11546.640308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.113 3.887 3 C -0.240 4.240 4 S 0.004 5.996 5 C 0.487 3.513 6 O -0.472 6.472 7 N -0.516 5.516 8 C 0.080 3.920 9 C 0.493 3.507 10 O -0.528 6.528 11 N -0.712 5.712 12 C 0.163 3.837 13 H 0.090 0.910 14 C -0.134 4.134 15 C 0.148 3.852 16 N -0.582 5.582 17 C -0.245 4.245 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.907 5.907 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.146 3.854 26 C 0.073 3.927 27 H 0.044 0.956 28 O -0.560 6.560 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.192 0.808 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.403 0.597 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.019 0.981 39 H 0.058 0.942 40 H 0.254 0.746 41 H 0.028 0.972 42 H 0.096 0.904 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 14.430 17.859 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.002 3.998 3 C -0.378 4.378 4 S 0.247 5.753 5 C 0.169 3.831 6 O -0.351 6.351 7 N -0.236 5.236 8 C -0.050 4.050 9 C 0.277 3.723 10 O -0.404 6.404 11 N -0.363 5.363 12 C 0.060 3.940 13 H 0.108 0.892 14 C -0.175 4.175 15 C 0.021 3.979 16 N -0.305 5.305 17 C -0.374 4.374 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.551 5.551 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.018 3.982 26 C 0.012 3.988 27 H 0.062 0.938 28 O -0.366 6.366 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.209 0.791 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.238 0.762 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.114 0.886 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.980 15.498 17.177 23.475 hybrid contribution -1.870 -2.327 -0.091 2.986 sum 2.110 13.171 17.086 21.676 Atomic orbital electron populations 1.20783 0.86613 1.05015 1.03676 1.19385 0.95807 0.84727 0.99861 1.24830 0.93153 1.01216 1.18630 1.85074 1.08540 1.00760 1.80970 1.21556 0.83510 0.95866 0.82188 1.90970 1.48583 1.42488 1.53085 1.45595 1.06304 1.06626 1.65074 1.21740 1.01149 0.85229 0.96860 1.20654 0.78476 0.82318 0.90894 1.90758 1.50300 1.53822 1.45497 1.46151 1.59855 1.20059 1.10250 1.21056 0.98928 0.93017 0.81036 0.89193 1.22291 0.96874 0.98504 0.99795 1.20889 0.99176 0.85857 0.91990 1.43869 1.20785 0.99360 1.66442 1.19155 0.87881 1.01048 1.29347 0.91686 1.25040 0.96274 1.00262 0.98261 1.70018 1.18272 1.22366 1.44486 0.86292 0.81806 0.80404 0.78249 1.21403 1.21622 1.20472 1.21438 0.89905 0.99601 0.87208 1.22835 0.87831 0.92537 0.95611 0.93801 1.86322 1.51459 1.27592 1.71220 0.89538 0.88881 0.90569 0.79083 0.85999 0.85891 0.76244 0.93032 0.91131 0.96284 0.92383 0.93588 0.95433 0.88580 0.77696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 9.30 36.01 0.34 -0.27 16 2 C 0.11 1.02 6.59 -82.51 -0.54 0.48 16 3 C -0.24 -1.99 11.24 28.83 0.32 -1.67 16 4 S 0.00 0.04 22.97 -107.50 -2.47 -2.43 16 5 C 0.49 6.78 8.27 53.82 0.45 7.23 16 6 O -0.47 -8.03 17.55 5.07 0.09 -7.94 16 7 N -0.52 -5.89 2.09 -118.56 -0.25 -6.14 16 8 C 0.08 0.79 5.47 -5.19 -0.03 0.76 16 9 C 0.49 6.84 7.60 -10.99 -0.08 6.75 16 10 O -0.53 -9.60 16.09 5.56 0.09 -9.51 16 11 N -0.71 -9.60 5.05 -53.76 -0.27 -9.87 16 12 C 0.16 2.78 2.20 -67.89 -0.15 2.63 16 13 H 0.09 1.74 7.58 -51.93 -0.39 1.34 16 14 C -0.13 -2.41 5.51 -26.61 -0.15 -2.56 16 15 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 16 N -0.58 -14.04 2.93 -172.32 -0.51 -14.55 16 17 C -0.24 -6.49 9.58 -15.06 -0.14 -6.63 16 18 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 19 C 0.00 -0.01 4.92 -17.43 -0.09 -0.10 16 20 N -0.91 -25.39 11.20 55.49 0.62 -24.77 16 21 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 C 0.15 3.25 4.94 -3.71 -0.02 3.23 16 26 C 0.07 1.28 3.38 -26.61 -0.09 1.19 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 O -0.56 -9.29 12.09 -35.23 -0.43 -9.72 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.08 0.55 6.70 -51.93 -0.35 0.20 16 32 H 0.19 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.12 0.73 6.83 -51.93 -0.35 0.38 16 34 H 0.12 1.11 7.80 -51.93 -0.40 0.71 16 35 H 0.40 4.47 8.26 -40.82 -0.34 4.13 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.31 7.61 -51.93 -0.40 0.92 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 2.35 6.06 -51.93 -0.31 2.04 16 43 H 0.38 5.43 9.08 45.56 0.41 5.84 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -34.47 367.31 -7.88 -42.35 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.05 Total: 6.92 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: -0.21 Total: 14.14 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.40 Total: -55.34 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.25 Total: -27.17 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.47 Total: -2.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.47 -7.88 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090793639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.702 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds