Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32572 * 121.64551 * 2 1 4 4 S 1.77230 * 105.31818 * 180.02562 * 3 2 1 5 5 C 1.72211 * 94.84762 * 359.81091 * 4 3 2 6 6 O 1.21829 * 127.05548 * 180.20627 * 5 4 3 7 7 N 1.34241 * 105.88491 * 0.32155 * 5 4 3 8 8 C 1.46505 * 121.38015 * 179.88359 * 7 5 4 9 9 C 1.50702 * 109.46613 * 269.71784 * 8 7 5 10 10 O 1.21277 * 120.00093 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99511 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00037 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.44838 * 35.03475 * 12 11 9 14 14 C 1.53042 * 109.46158 * 275.07198 * 12 11 9 15 15 C 1.53192 * 109.31216 * 178.61318 * 14 12 11 16 16 N 1.46919 * 108.77635 * 54.63525 * 15 14 12 17 17 C 1.36932 * 120.63130 * 126.41586 * 16 15 14 18 18 H 1.08004 * 120.00164 * 331.80697 * 17 16 15 19 19 C 1.38814 * 120.00237 * 151.81242 * 17 16 15 20 20 N 1.31625 * 119.99827 * 343.07241 * 19 17 16 21 21 Si 1.86801 * 120.00333 * 163.07796 * 19 17 16 22 22 H 1.48506 * 109.47246 * 89.99725 * 21 19 17 23 23 H 1.48493 * 109.47438 * 209.99651 * 21 19 17 24 24 H 1.48498 * 109.47123 * 330.00069 * 21 19 17 25 25 C 1.46928 * 118.73929 * 306.39082 * 16 15 14 26 26 C 1.53042 * 109.46006 * 155.00160 * 12 11 9 27 27 H 1.08998 * 109.52479 * 301.35625 * 26 12 11 28 28 O 1.42902 * 109.49715 * 61.43800 * 26 12 11 29 29 H 1.08995 * 109.47140 * 269.97954 * 1 2 3 30 30 H 1.08998 * 109.47070 * 29.97898 * 1 2 3 31 31 H 1.09000 * 109.46909 * 149.97880 * 1 2 3 32 32 H 1.07996 * 127.33672 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.47184 * 149.71841 * 8 7 5 34 34 H 1.09002 * 109.46717 * 29.71468 * 8 7 5 35 35 H 0.97005 * 119.99988 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.49536 * 58.66027 * 14 12 11 37 37 H 1.08994 * 109.52180 * 298.57744 * 14 12 11 38 38 H 1.09005 * 109.58473 * 294.84969 * 15 14 12 39 39 H 1.08998 * 109.58593 * 174.42610 * 15 14 12 40 40 H 0.96996 * 119.99414 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.58708 * 293.81755 * 25 16 15 42 42 H 1.09004 * 109.58945 * 173.39533 * 25 16 15 43 43 H 0.96698 * 113.99956 * 179.83809 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1286 0.0000 4 16 3.9034 0.6304 -0.0008 5 6 3.5607 -1.0573 0.0046 6 8 4.3674 -1.9702 0.0098 7 7 2.2222 -1.1604 -0.0006 8 6 1.5577 -2.4661 -0.0006 9 6 1.3294 -2.9134 -1.4215 10 8 1.6870 -2.2110 -2.3432 11 7 0.7288 -4.0945 -1.6678 12 6 0.5063 -4.5291 -3.0490 13 1 1.3364 -4.1967 -3.6723 14 6 -0.7980 -3.9219 -3.5708 15 6 -1.0097 -4.3504 -5.0263 16 7 -0.9548 -5.8167 -5.1003 17 6 -1.9752 -6.5249 -5.6768 18 1 -2.9796 -6.1278 -5.6695 19 6 -1.7188 -7.7532 -6.2704 20 7 -0.4845 -8.0895 -6.5804 21 14 -3.1253 -8.9288 -6.6297 22 1 -3.6581 -8.6623 -7.9900 23 1 -2.6323 -10.3276 -6.5566 24 1 -4.2038 -8.7311 -5.6282 25 6 0.2161 -6.5087 -4.5445 26 6 0.4141 -6.0561 -3.0944 27 1 1.3339 -6.4884 -2.7007 28 8 -0.6940 -6.4907 -2.3036 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.8152 2.1367 0.0004 33 1 0.6000 -2.3863 0.5136 34 1 2.1863 -3.1937 0.5128 35 1 0.4431 -4.6564 -0.9305 36 1 -0.7405 -2.8347 -3.5163 37 1 -1.6320 -4.2730 -2.9633 38 1 -0.2249 -3.9233 -5.6508 39 1 -1.9836 -4.0033 -5.3714 40 1 -0.3055 -8.9476 -6.9955 41 1 1.1008 -6.2578 -5.1297 42 1 0.0510 -7.5859 -4.5717 43 1 -0.8143 -7.4501 -2.2888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090793639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -82.897564 kcal Electronic energy + Delta-G solvation = -28229.712638 eV Core-core repulsion = 24208.816442 eV Total energy + Delta-G solvation = -4020.896196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.32884 -40.85055 -39.39846 -38.64254 -36.50696 -35.78299 -34.06128 -33.47108 -31.72509 -30.90090 -30.52374 -27.89488 -26.73253 -24.91121 -24.10224 -23.56164 -22.07367 -21.35473 -20.89181 -19.24275 -19.07532 -18.57828 -18.36773 -17.43342 -17.09208 -16.88753 -16.66289 -16.47168 -15.95364 -15.67749 -15.45761 -15.27910 -15.10854 -14.94486 -14.60121 -14.56598 -14.38216 -13.88546 -13.67293 -13.50807 -13.15871 -13.07895 -12.80898 -12.62690 -12.55615 -12.41835 -12.26328 -12.12752 -12.04777 -11.85749 -11.52051 -11.32845 -11.25010 -10.78747 -10.60043 -10.50291 -10.11117 -8.97006 -8.69367 -7.88871 -5.33600 -0.14359 0.39209 0.82519 1.05810 1.42627 1.47660 1.49975 1.59601 1.63618 2.14553 2.51217 3.23378 3.36098 3.47555 3.58573 3.70143 3.77155 3.84796 3.98498 4.06363 4.20622 4.32485 4.36276 4.56147 4.57941 4.64220 4.71221 4.75779 4.84711 4.91791 4.93295 5.04673 5.15047 5.25888 5.39292 5.42483 5.53567 5.64278 5.66667 6.16894 6.35734 6.45984 6.88683 7.10678 7.13252 7.81023 8.34308 9.17764 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027975 B = 0.002478 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.656103 B =11294.843535 C =11546.640308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.096 3.904 3 C -0.226 4.226 4 S -0.003 6.003 5 C 0.465 3.535 6 O -0.522 6.522 7 N -0.516 5.516 8 C 0.084 3.916 9 C 0.494 3.506 10 O -0.574 6.574 11 N -0.699 5.699 12 C 0.170 3.830 13 H 0.064 0.936 14 C -0.115 4.115 15 C 0.143 3.857 16 N -0.597 5.597 17 C -0.254 4.254 18 H 0.065 0.935 19 C -0.048 4.048 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.150 3.850 26 C 0.092 3.908 27 H 0.065 0.935 28 O -0.557 6.557 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.229 0.771 33 H 0.169 0.831 34 H 0.133 0.867 35 H 0.419 0.581 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.005 0.995 39 H 0.059 0.941 40 H 0.250 0.750 41 H -0.002 1.002 42 H 0.073 0.927 43 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.024 15.617 20.204 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.013 4.013 3 C -0.363 4.363 4 S 0.240 5.760 5 C 0.148 3.852 6 O -0.406 6.406 7 N -0.236 5.236 8 C -0.045 4.045 9 C 0.280 3.720 10 O -0.453 6.453 11 N -0.351 5.351 12 C 0.065 3.935 13 H 0.082 0.918 14 C -0.155 4.155 15 C 0.017 3.983 16 N -0.320 5.320 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.243 4.243 20 N -0.584 5.584 21 Si 0.796 3.204 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.194 1.194 25 C 0.023 3.977 26 C 0.031 3.969 27 H 0.082 0.918 28 O -0.364 6.364 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.245 0.755 33 H 0.187 0.813 34 H 0.151 0.849 35 H 0.256 0.744 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.023 0.977 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.016 0.984 42 H 0.091 0.909 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.873 16.714 19.576 25.809 hybrid contribution -1.238 -2.575 -0.865 2.985 sum 0.635 14.139 18.711 23.461 Atomic orbital electron populations 1.20917 0.83911 1.05243 1.05613 1.20005 0.97405 0.83987 0.99928 1.25389 0.90724 1.02737 1.17432 1.85068 1.11393 0.99176 1.80364 1.21976 0.84252 0.96462 0.82480 1.90925 1.49976 1.44175 1.55490 1.45714 1.05758 1.07940 1.64211 1.21909 1.03516 0.84990 0.94074 1.21327 0.77036 0.81497 0.92182 1.90744 1.52054 1.55155 1.47386 1.45872 1.59766 1.20398 1.09058 1.20673 0.97543 0.92518 0.82781 0.91768 1.22033 0.97228 0.98935 0.97266 1.20989 0.98759 0.84412 0.94156 1.44098 1.20661 1.00507 1.66774 1.19436 0.88472 1.01442 1.29087 0.91774 1.25747 0.98366 1.01683 0.98535 1.70174 1.20113 1.22485 1.45614 0.85272 0.79209 0.78036 0.77846 1.21720 1.21816 1.19351 1.21306 0.88213 0.98217 0.89944 1.22447 0.89051 0.92970 0.92454 0.91761 1.86292 1.50966 1.28815 1.70303 0.86624 0.87385 0.91573 0.75476 0.81327 0.84927 0.74364 0.92102 0.90970 0.97673 0.92277 0.94047 0.98373 0.90877 0.76371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.30 71.24 0.66 -0.10 16 2 C 0.10 1.46 6.59 40.71 0.27 1.72 16 3 C -0.23 -3.09 11.24 66.67 0.75 -2.34 16 4 S 0.00 -0.07 22.97 -56.49 -1.30 -1.36 16 5 C 0.46 12.88 8.27 129.87 1.07 13.95 16 6 O -0.52 -18.31 17.55 -4.76 -0.08 -18.40 16 7 N -0.52 -10.91 2.09 -647.48 -1.35 -12.27 16 8 C 0.08 1.44 5.47 85.63 0.47 1.91 16 9 C 0.49 12.92 7.60 87.66 0.67 13.58 16 10 O -0.57 -20.68 16.09 -3.02 -0.05 -20.73 16 11 N -0.70 -17.47 5.05 -442.40 -2.23 -19.70 16 12 C 0.17 5.67 2.20 45.02 0.10 5.77 16 13 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 14 C -0.11 -3.99 5.51 30.67 0.17 -3.82 16 15 C 0.14 6.09 6.52 86.36 0.56 6.65 16 16 N -0.60 -29.20 2.93 -699.09 -2.05 -31.25 16 17 C -0.25 -13.56 9.58 84.03 0.81 -12.75 16 18 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 19 C -0.05 -2.60 4.92 84.86 0.42 -2.18 16 20 N -0.94 -53.71 11.20 21.65 0.24 -53.47 16 21 Si 0.97 43.38 29.59 68.60 2.03 45.41 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 C 0.15 6.85 4.94 86.36 0.43 7.28 16 26 C 0.09 3.16 3.38 30.67 0.10 3.26 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 O -0.56 -17.30 12.09 -148.98 -1.80 -19.10 16 29 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.11 0.55 8.10 -2.39 -0.02 0.53 16 31 H 0.07 0.69 6.70 -2.39 -0.02 0.68 16 32 H 0.23 1.28 8.06 -2.91 -0.02 1.25 16 33 H 0.17 1.28 6.83 -2.39 -0.02 1.27 16 34 H 0.13 2.11 7.80 -2.39 -0.02 2.09 16 35 H 0.42 7.99 8.26 -92.70 -0.77 7.22 16 36 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 37 H 0.07 2.52 7.61 -2.39 -0.02 2.50 16 38 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 39 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 40 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.07 3.67 6.06 -2.38 -0.01 3.66 16 43 H 0.39 10.42 9.08 -74.06 -0.67 9.75 16 Total: -1.00 -78.20 367.31 -0.50 -78.70 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.37 Total: 19.23 kcal Atomic # 6 Polarization: 26.47 SS G_CDS: 6.47 Total: 32.94 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -5.40 Total: -116.69 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -1.93 Total: -58.22 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.30 Total: -1.36 kcal Total: -78.20 -0.50 -78.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090793639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.202 kcal (2) G-P(sol) polarization free energy of solvation -78.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds