Wall clock time and date at job start Sat Apr 11 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46869 * 2 1 4 4 C 1.50704 * 109.47305 * 119.99404 * 2 1 3 5 5 N 1.30439 * 125.98830 * 300.02782 * 4 2 1 6 6 N 1.39936 * 108.91452 * 179.97438 * 5 4 2 7 7 C 1.46499 * 125.75002 * 180.02562 * 6 5 4 8 8 H 1.08997 * 110.01404 * 333.59362 * 7 6 5 9 9 C 1.53877 * 110.02665 * 94.97406 * 7 6 5 10 10 C 1.54167 * 108.70334 * 166.47041 * 9 7 6 11 11 S 1.82923 * 105.08615 * 332.09321 * 10 9 7 12 12 O 1.42097 * 109.35355 * 115.51936 * 11 10 9 13 13 O 1.42096 * 109.35242 * 248.59485 * 11 10 9 14 14 C 1.55044 * 110.02541 * 212.16439 * 7 6 5 15 15 C 1.34285 * 108.49450 * 359.72821 * 6 5 4 16 16 C 1.38106 * 107.40676 * 0.42773 * 15 6 5 17 17 C 1.47358 * 126.42511 * 179.83426 * 16 15 6 18 18 O 1.21623 * 120.00204 * 179.69263 * 17 16 15 19 19 N 1.34777 * 119.99551 * 359.68954 * 17 16 15 20 20 C 1.36987 * 119.99789 * 179.72310 * 19 17 16 21 21 H 1.08002 * 119.99655 * 0.27691 * 20 19 17 22 22 C 1.38973 * 120.00088 * 180.27692 * 20 19 17 23 23 N 1.31414 * 119.99883 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00011 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47403 * 120.00336 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00133 * 24 22 20 28 28 H 1.09003 * 109.47114 * 300.00186 * 1 2 3 29 29 H 1.08995 * 109.47284 * 60.00427 * 1 2 3 30 30 H 1.08999 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47114 * 239.99814 * 2 1 3 32 32 H 1.08998 * 109.47149 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46756 * 299.99749 * 3 2 1 34 34 H 1.08989 * 109.47484 * 59.99845 * 3 2 1 35 35 H 1.08997 * 109.64784 * 286.31841 * 9 7 6 36 36 H 1.09002 * 109.64914 * 46.75457 * 9 7 6 37 37 H 1.08996 * 110.31774 * 90.99168 * 10 9 7 38 38 H 1.08995 * 110.32147 * 213.08787 * 10 9 7 39 39 H 1.09004 * 110.79057 * 316.54582 * 14 7 6 40 40 H 1.09002 * 110.78952 * 80.00525 * 14 7 6 41 41 H 1.08003 * 126.29626 * 180.26371 * 15 6 5 42 42 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 43 43 H 0.96999 * 119.99863 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 1.7900 -0.3682 2.4657 6 7 2.4293 -1.2728 3.3208 7 6 2.4002 -1.2334 4.7850 8 1 2.2351 -0.2119 5.1275 9 6 1.2863 -2.1534 5.3148 10 6 1.4936 -2.3595 6.8285 11 16 3.2936 -2.1693 7.0928 12 8 3.5322 -1.0302 7.9080 13 8 3.8523 -3.4258 7.4511 14 6 3.7344 -1.7774 5.3574 15 6 3.0685 -2.1868 2.5730 16 6 2.8482 -1.8641 1.2484 17 6 3.3623 -2.5904 0.0737 18 8 3.0899 -2.2045 -1.0470 19 7 4.1343 -3.6823 0.2414 20 6 4.6075 -4.3608 -0.8505 21 1 4.3656 -4.0181 -1.8457 22 6 5.3989 -5.4900 -0.6776 23 7 5.6928 -5.9073 0.5334 24 14 6.0447 -6.4148 -2.1666 25 1 5.5753 -5.7460 -3.4065 26 1 7.5295 -6.4210 -2.1398 27 1 5.5434 -7.8123 -2.1371 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 0.3147 -1.6921 5.1375 36 1 1.3332 -3.1162 4.8061 37 1 0.9465 -1.6036 7.3919 38 1 1.1697 -3.3578 7.1225 39 1 4.0461 -2.6760 4.8249 40 1 4.5118 -1.0142 5.3186 41 1 3.6503 -3.0195 2.9400 42 1 4.3513 -3.9903 1.1353 43 1 6.2455 -6.6952 0.6540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136559951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:03 Heat of formation + Delta-G solvation = -36.500496 kcal Electronic energy + Delta-G solvation = -27908.649371 eV Core-core repulsion = 23889.765103 eV Total energy + Delta-G solvation = -4018.884268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25175 -38.02305 -37.47076 -37.09201 -36.40886 -35.02661 -33.90792 -31.53511 -31.34366 -29.81767 -29.17355 -26.86121 -25.88852 -24.98277 -23.23035 -22.37400 -20.78168 -19.53818 -19.21006 -18.89685 -18.12003 -17.36674 -17.14702 -16.24288 -16.06581 -15.44272 -15.13448 -15.01959 -14.60661 -14.42808 -14.27001 -14.24305 -13.88883 -13.37496 -13.21921 -13.08919 -12.91674 -12.65294 -12.56195 -12.44890 -12.42087 -12.22009 -11.91372 -11.65686 -11.62358 -11.36210 -11.15440 -11.09545 -10.96305 -10.85417 -10.65219 -10.37833 -10.32076 -10.23979 -9.60997 -9.10675 -8.40114 -8.26922 -8.01920 -6.50402 -3.86440 -0.48066 1.79692 1.94873 2.43172 2.64557 3.08053 3.17882 3.24156 3.31193 3.48667 3.73483 3.97780 4.07480 4.13420 4.27932 4.31649 4.38711 4.71185 4.88318 4.90501 5.02777 5.10747 5.16969 5.24433 5.30991 5.32138 5.42347 5.51233 5.63005 5.81495 5.88347 5.99071 6.07872 6.19336 6.28055 6.38848 6.52823 6.66110 6.97269 7.02275 7.48949 7.85845 8.04506 8.55636 9.11561 9.48143 10.01933 10.67564 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008816 B = 0.003887 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.126007 B = 7201.090734 C = 9884.684167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 C -0.136 4.136 4 C 0.135 3.865 5 N -0.301 5.301 6 N -0.364 5.364 7 C 0.173 3.827 8 H 0.126 0.874 9 C -0.131 4.131 10 C -0.588 4.588 11 S 2.404 3.596 12 O -0.929 6.929 13 O -0.925 6.925 14 C -0.617 4.617 15 C 0.069 3.931 16 C -0.237 4.237 17 C 0.511 3.489 18 O -0.592 6.592 19 N -0.553 5.553 20 C -0.294 4.294 21 H 0.107 0.893 22 C 0.022 3.978 23 N -0.899 5.899 24 Si 0.931 3.069 25 H -0.267 1.267 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.178 0.822 42 H 0.390 0.610 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 8.286 12.666 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.051 4.051 3 C -0.194 4.194 4 C -0.033 4.033 5 N -0.121 5.121 6 N -0.144 5.144 7 C 0.069 3.931 8 H 0.143 0.857 9 C -0.170 4.170 10 C -0.718 4.718 11 S 2.584 3.416 12 O -0.926 6.926 13 O -0.922 6.922 14 C -0.745 4.745 15 C -0.079 4.079 16 C -0.251 4.251 17 C 0.298 3.702 18 O -0.478 6.478 19 N -0.188 5.188 20 C -0.423 4.423 21 H 0.125 0.875 22 C -0.180 4.180 23 N -0.540 5.540 24 Si 0.758 3.242 25 H -0.191 1.191 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.195 0.805 42 H 0.223 0.777 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.490 9.103 13.696 18.507 hybrid contribution 0.560 -1.415 -1.136 1.900 sum -7.929 7.687 12.559 16.724 Atomic orbital electron populations 1.21752 0.94477 1.01773 1.01396 1.19982 0.95415 0.95376 0.94359 1.21754 1.01203 0.95077 1.01398 1.22349 0.94522 0.93544 0.92871 1.76996 1.20574 1.14250 1.00271 1.47891 1.40339 1.21907 1.04301 1.21658 0.91595 1.02335 0.77548 0.85659 1.22390 1.01100 1.02200 0.91352 1.30490 1.24845 1.12667 1.03785 1.08764 0.79476 0.75656 0.77696 1.93646 1.83895 1.51333 1.63749 1.93664 1.75712 1.41886 1.80899 1.31292 1.05292 1.13063 1.24864 1.22981 0.98328 0.95447 0.91143 1.20713 1.09572 1.01860 0.92991 1.16843 0.83551 0.82825 0.87004 1.90518 1.63395 1.69230 1.24683 1.41773 1.43657 1.23727 1.09603 1.19817 1.27179 1.06684 0.88661 0.87519 1.25289 0.97297 0.97391 0.98008 1.69600 1.37953 1.25512 1.20913 0.85775 0.78377 0.79003 0.81085 1.19084 1.20707 1.20701 0.92857 0.92344 0.92760 0.85791 0.92745 0.92350 0.92836 0.87716 0.88561 0.83954 0.83560 0.82933 0.82994 0.80472 0.77692 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.18 37.16 0.34 -1.54 16 2 C -0.03 -0.51 3.26 -91.77 -0.30 -0.81 16 3 C -0.14 -1.91 9.18 37.16 0.34 -1.57 16 4 C 0.14 2.39 5.77 -82.01 -0.47 1.92 16 5 N -0.30 -4.74 12.50 33.90 0.42 -4.32 16 6 N -0.36 -4.86 3.55 -52.80 -0.19 -5.05 16 7 C 0.17 1.51 3.66 -66.39 -0.24 1.27 16 8 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 9 C -0.13 -0.87 6.03 -25.66 -0.15 -1.03 16 10 C -0.59 -2.74 7.26 37.77 0.27 -2.46 16 11 S 2.40 17.59 6.10 -107.50 -0.66 16.93 16 12 O -0.93 -9.70 18.15 -57.73 -1.05 -10.74 16 13 O -0.92 -10.44 18.15 -57.73 -1.05 -11.49 16 14 C -0.62 -4.57 6.53 38.24 0.25 -4.32 16 15 C 0.07 1.06 10.08 -16.53 -0.17 0.89 16 16 C -0.24 -4.59 6.13 -105.06 -0.64 -5.23 16 17 C 0.51 12.14 7.76 -12.55 -0.10 12.04 16 18 O -0.59 -15.63 14.14 5.26 0.07 -15.55 16 19 N -0.55 -13.68 5.27 -11.97 -0.06 -13.74 16 20 C -0.29 -7.93 9.68 -14.98 -0.14 -8.07 16 21 H 0.11 3.02 7.15 -52.49 -0.38 2.64 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -23.52 13.05 55.50 0.72 -22.79 16 24 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.12 2.40 5.60 -51.93 -0.29 2.11 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.71 8.14 -51.94 -0.42 0.28 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.14 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.15 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.15 1.10 6.49 -51.93 -0.34 0.77 16 40 H 0.15 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.18 2.33 6.31 -52.48 -0.33 2.00 16 42 H 0.39 9.03 6.82 -40.82 -0.28 8.76 16 43 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 370.19 15.07 5.58 5.58 Total: -1.00 -36.72 370.19 -8.16 -44.88 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.82 Total: 9.32 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.11 Total: -8.42 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.90 Total: -45.91 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -2.02 Total: -37.79 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 17.59 SS G_CDS: -0.66 Total: 16.93 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.72 -8.16 -44.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.382 kcal (2) G-P(sol) polarization free energy of solvation -36.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds